Specific fragmentation of the K‐shell excited/ionized pyridine derivatives studied by electron impact: 2‐, 3‐ and 4‐methylpyridine

Fragmentation of the pyridine ring upon K‐shell excitation/ionization has been studied with gaseous 2‐, 3‐ and 4‐methylpyridine by the electron‐impact method. Ab initio molecular orbital (MO) calculations were also carried out to explore electronic states correlating with specific fragments. Some specific fragmentation channels were identified from the ionic fragments enhanced characteristically at the N 1s edge. Yields of the C₂HN⁺ and C₅H₅⁺/C₅H₆⁺ ions show that the fission of the N? C2 and C4? C5/C5? C6 bonds of the ring is likely to occur after the N 1s excitation and ionization. Ab initio MO calculations for the 2‐methylpyridine molecule indicate that the dissociation channels to produce these ions are only accessible through the excited states of the parent molecular dication, which can be formed by Auger decays after the N 1s ionization. Fragment ions via hydrogen rearrangement are produced as well, but the rearrangement is not a phenomenon specific to the K‐shell excitation/ionization. Copyright © 2010 John Wiley & Sons, Ltd.     

Photofragmentation of the K-shell excited perfluorocyclobutane: anisotropies in the fragments and breakdown pathways

Total ion yield spectrum of perfluorocyclobutane (c-C(4)F(8)) has been measured in the C and F K-shell excitation regions. The peak assignments are presented based on angle-resolved photofragment ion mass spectrometry. The peaks at 291.34 and 688.5 eV are found to come from the transitions from the C 1s and the F 1s to the lowest unoccupied b(2)σ(CF)* orbital, respectively. A photoelectron-photoion-photoion coincidence spectrum is acquired at 700.1 eV for clarifying the breakdown pathways of c-C(4)F(8)(2+). Two series of the pathways are identified; fission of F atom(s) followed by charge separation and elimination of CF(2) or CF(3) followed by charge separation.     

The investigation of substituent effects on the fragmentation pathways of pentacoordinated phenoxyspirophosphoranes by ESI‐MSn

The fragmentation pathways of pentacoordinated phenoxyspirophosphoranes were investigated in the positive mode by electrospray ionization multistage mass spectrometry. The results demonstrate that the sodium adducts of the title compounds undergo two competitive fragmentation pathways, and the fragmentation patterns are heavily dependent on the various substituent patterns at the phenolic group. An electron‐withdrawing substituent at the ortho‐position always results in the removal of a corresponding phenol analogue, while cleavage by spiroring opening becomes the predominant fragmentation pathway if an electron‐donating substituent is at the phenolic group. The substituent effects on the competitive fragmentation pathways were further elucidated by theoretical calculations, single crystal structure analysis, and high‐resolution mass spectrometry. The results contribute to the understanding of the gas‐phase fragmentation reactions and the structure identification of spirophosphorane analogues by electrospray ionization multistage mass spectrometry.     

Substituent effect on electron affinity,gas‐phase basicity,and structure of monosubstituted propynyl radicals and their anions: A theoretical study

The substituent effect of electron‐withdrawing groups on electron affinity and gas‐phase basicity has been investigated for substituted propynl radicals and their corresponding anions. It is shown that when a hydrogen of the α‐CH₃ group in the propynyl system is substituted by an electron‐withdrawing substituent, electron affinity increases, whereas gas‐phase basicity decreases. These results can be explained in terms of the natural atomic charge of the terminal acetylene carbon of the systems. The calculated electron affinities are 3.28 eV (?C?C? CH₂F), 3.59 eV (?C?C? CH₂Cl) and 3.73 eV (?C?C? CH₂Br), and the gas‐phase basicities of their anions are 359.5 kcal/mol (^?:C?C? CH₂F), 354.8 kcal/mol (:C?C? CH₂Cl) and 351.3 kcal/mol (^?:C?C? CH₂Br). It is concluded that the larger the magnitude of electron‐withdrawing, the greater is the electron affinity of radical and the smaller is the gas‐phase basicity of its anion. © 2009 Wiley Periodicals, Inc. J Comput Chem, 2009     

Fragmentation of synthetic cannabinoids with an isopropyl group or a tert‐butyl group ionized by electron impact and electrospray

This study described a fragmentation pattern of 21 synthetic cannabinoids with an isopropyl group or a tert‐butyl group by electron impact ionization quadrupole mass spectrometry and electrospray ionization time‐of‐flight mass spectrometry in the positive mode. The compounds were categorized into four types according to substituted group such as a terminal amide and ester. The characteristic fragment ion in each group was obtained. The main common fragment ions for the two ionizations were formed by C–N cleavage of the amide group adjacent to the N‐hetero rings. Additionally, the fragment ions indicated the difference in the basic structure as well as substituted group, which are useful for estimating the chemical structures of unknown compounds. Copyright © 2015 John Wiley & Sons, Ltd.     

Isotope effects on intensities in the K-shell excitation spectra of CH4 and CD4 studied by 2.5 keV electron impact

The isotope effect on the intensity of the 1a₁(K) » 3a₁(3s) transition in methane has been examined by inner shell electron energy loss spectroscopy. The intensity ratio, I_K»3s(CD₄)/I_K»3s(CH₄) is 0.81 ± 0.08 which is at variance with a recent theoretical prediction by Bagus et al. It is shown that the measured ratio is compatible with a Herzberg-Teller vibronic coupling mechanism for this transition.     

Effect of position of the lateral fluoro substituent on the mesophase behaviour of aryl 4-alkoxyphenylazo benzoates in pure and binary mixtures

Five groups of 4-substituted phenyl 4?-(2?- (or 3″-) substituted-4?-alkoxyphenylazo) benzoates (In_a-c to Vn_a-c) were investigated in which, within each group, the length of the terminal alkoxy group varies between 8 and 16 carbons, while the other terminal substituent, X, is a polar group that alternatively changed between the electron-donating CH₃O and the electron-withdrawing Br group, in addition to the un-substituted analogue (X = H). The lateral substituent (Y) in the five groups I–V varies, respectively, between H, 3-CH₃, 2-CH₃, 3-F and 2-F. Their mesophase stabilities were determined by differential scanning calorimetry and phases identified by polarised light microscopy. The two newly prepared groups of compounds (IVn_a-c and Vn_a-c) are structurally characterised by infrared, ¹H-NMR, mass spectroscopy, thermogravimetric and elemental analyses. Binary phase diagrams were constructed for each pair of isomers from groups IV and V bearing the same wing substituents but the lateral F is attached to different positions (2? or 3″).     

Crossing the phase boundary to study protein dynamics and function: combination of amide hydrogen exchange in solution and ion fragmentation in the gas phase

Protein dynamics are the key to understanding their behavior. The static protein structure alone in most cases is insufficient to describe the vast array of complex functions they perform in vivo. Until recently there were relatively few techniques available to investigate the dynamic nature of these proteins. Mass spectrometry has recently emerged as a powerful biophysical method, capable of providing both structural and dynamic information. By utilizing the labile nature of amide hydrogens as a marker of the backbone dynamics in solution, combined with gas-phase dissociation techniques, we now have a high-resolution tool to locate these exchanging hydrogens within the sequence of the protein and to probe the functional importance of its structural elements. In this paper we describe several applications of these methodologies to illustrate the importance of dynamics to the biological functions of proteins.     

Styrene‐vinyl pyridine diblock copolymers: Achieving high molecular weights by the combination of anionic and reversible addition–fragmentation chain transfer polymerizations

Anionic and reversible addition–fragmentation chain transfer (RAFT) polymerizations were combined for the preparation of high molecular weight (MW) amphiphilic diblock copolymers based on the hydrophobic styrene (Sty) and the more polar 2‐vinyl pyridine (2VPy) or 4‐vinyl pyridine (4VPy). In particular, four amphiphilic Sty‐VPy diblock copolymers with MWs up to 271,000 g mol^–1 were prepared. For the polymer synthesis, first, living anionic polymerization of Sty using sec‐butyl‐lithium as initiator in tetrahydrofuran at ?70 °C, followed by termination with ethylene oxide were employed for the preparation of OH‐functionalized homopolyStys. Subsequently, a modification of the OH‐terminal group was performed by the attachment of a 4‐cyanopentanoic acid dithiobenzoate chain transfer agent (CTA) group, giving a polySty macroRAFT CTA, which was extended with 2VPy or 4VPy units using RAFT polymerization. Thus, the prepared diblock copolymers comprised a first block which was near‐monodisperse in size, and a second more heterogeneous block. All diblock copolymers were characterized in terms of their MWs and compositions by gel permeation chromatography and ¹H NMR spectroscopy, respectively, giving results close to the theoretically expected values. Films cast from chloroform solutions of the diblock copolymers were investigated in terms of their bulk morphologies using transmission electron microscopy, which indicated that the minority block consistently formed the discontinuous microphase, spherical or cylindrical. © 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2013     

Observation of an unusually facile fragmentation pathway of gas-phase peptide ions: a study on the gas-phase fragmentation mechanism and energetics of tryptic peptides modified with 4-sulfophenyl isothiocyanate (SPITC) and 4-chlorosulfophenyl isocyanate (SPC) and their 18-crown-6 complexes

Various peptide modifications have been explored recently to facilitate the acquisition of sequence information. N-terminal sulfonation is an interesting modification because it allows unambiguous de novo sequencing of peptides, especially in conjunction with MALDI-PSD-TOF analysis; such modified peptide ions undergo fragmentation at energies lower than those required conventionally for unmodified peptide ions. In this study, we systematically investigated the fragmentation mechanisms of N-terminal sulfonated peptide ions prepared using two different N-terminal sulfonation reagents: 4-sulfophenyl isothiocyanate (SPITC) and 4-chlorosulfophenyl isocyanate (SPC). Collision-induced dissociation (CID) of the SPC-modified peptide ions produced a set of y-series ions that were more evenly distributed relative to those observed for the SPITC-modified peptides; y(n-1) ion peaks were consistently and significantly larger than the signals of the other y-ions. We experimentally investigated the differences between the dissociation energies of the SPITC- and SPC-modified peptide ions by comparing the MS/MS spectra of the complexes formed between the crown ether 18-crown-6 (CE) and the modified peptides. Upon CID, the complexes formed between 18-crown-6 ether and the protonated amino groups of C-terminal lysine residues underwent either peptide backbone fragmentation or complex dissociation. Although the crown ether complexes of the unmodified ([M + CE + 2H]2+) and SPC-modified ([M* + CE + 2H]2+) peptides underwent predominantly noncovalent complex dissociation upon CID, the low-energy dissociations of the crown ether complexes of the SPITC-modified peptides ([M' + CE + 2H]2+) unexpectedly resulted in peptide backbone fragmentations, along with a degree of complex dissociation. We performed quantum mechanical calculations to address the energetics of fragmentations observed for the modified peptides.     

Test compounds for detecting the silanol effect on the elution of ionized amines in reversed‐phase LC

The effectiveness of several basic compounds for testing silica‐based stationary phases was reviewed by applying them to recent columns for reversed‐phase HPLC. Most octadecylsilylated (C18) stationary phases, prepared as a base‐deactivated material from high‐purity silica gel with endcapping, provided excellent peak shape and column efficiency for the bases including benzylamine and amitriptyline that once caused problems and were subsequently employed for testing silanol activities. However, a cyclic tertiary amine, dextrometorphan, was eluted as an acceptable peak from only a few columns at neutral pH. Such a more sensitive probe is expected to contribute to further improvement of the stationary phase for reversed‐phase HPLC.     

Effect of substituents on spin density in benzimidazole nitronyl nitroxide radicals studied by electron spin resonance

Several novel benzimidazole‐3‐oxide‐1‐oxyl radicals with substituents at 5 and/or 6 position were synthesized. The ESR analysis of nitrogen hyperfine coupling constants (hfccs) revealed that substituents at 5 and 6‐position affect the spin density to greater extent than substituents on the phenyl ring at 2‐position. Density functional theory calculations of nitrogen hfccs were performed using several different Pople type basis sets, as well as double and triple zeta quality individual gauge for localized orbital (IGLO‐II, IGLO‐III) and electron paramagnetic resonance (EPR‐II, EPR‐II) basis sets. Experimental and theoretical hfccs are compared. Copyright © 2009 John Wiley & Sons, Ltd.     

Influence of electronic and molecular structure on the fragmentation dynamic of even‐electron carbocationic triangulenes and helicenes in the gas phase

Stable, long‐lived organic cations are directly transferred by electrospray ionization (ESI) from solution into the gas phase where their collision‐induced dissociations (CID) are studied by tandem mass spectrometry. Three related types of triphenyl carbenium ions are investigated, in which the meta positions are either substituted by methoxy groups or tertiary nitrogen bridges, including tetramethoxyphenylacridinium (TMPA⁺), dimethoxyquinacridinium (DMQA⁺), and triazatriangulenium (TATA⁺) cations. These ions are triangular in shape with increasing degrees of planarity. Fragmentation occurs at the periphery of the triangular molecule, involving the methoxy groups and the substituent of the nitrogen bridge. Each initial precursor cation is an even electron (EE) system and shows competing dissociations into both even (EE) and odd electron (OE) fragment ions. The latter reaction is a breach of the classic ‘even‐electron rule’ in mass spectrometry. While the EE fragment dissociates similar to the precursor, the OE fragment ion shows a rich radical‐induced fragmentation pattern. Two driving forces direct the fragmentation of the EE precursor ion toward OE fragment ions, including the release of stabilized radicals and the extension of the π‐system by increasing planarization of the triangulene core. Copyright © 2017 John Wiley & Sons, Ltd.     

Effect of Ligand X in Cp*TiX3/MAO Catalysts on the Polymerization of Vinyl Chloride

The polymerization of vinyl chloride with Cp*TiX₃/MAO (X = OCH₃, OC₄H₉, OPh, Cl) catalysts in CH₂Cl₂ was investigated. The activity of the Cp*TiX₃/MAO catalytic systems depends on ligand X in that increased activity was found for increasing electron‐donating capacity of X. The relationship between Hammet's σ_m of ligand X and polymer yield gave a straight line, indicating that the electronic effect of X plays an important role.     

Study on the reactions of pyridine with fluorine-containing compounds in the gas-phase by electron impact/Fourier transfer ion cyclotron resonance mass spectrometry

The gas-phase ion-molecule reactions of pyridine and fluorine-containing compounds have been studied by the electron impact/Fourier transfer ion cyclotron resonance mass spectrometry (EI/FTICRMS). Comparing the reaction of the standard sample perfluorotributylamine (PFTBA), in the case of 3-oxa-5-iodo-octafluoropentylsulfonyl azide (ICF₂CF₂OCF₂CF₂SO₂N₃), a series of addition-elimination products and loss 28 from the expected adducts were obtained. Possible reaction mechanism was discussed, which was consistent with the results obtained in the condensed phase. These results demonstrated that EI/FTICRMS is a complementary technique for study of the organic reactions.     

Study on the reactions of pyridine with fluorine-containing compounds in the gas phase by electron impact/Fourier transfer ion cyclotron resonance mass spectrometry

The gas-phase ion-molecule reactions of pyridine and fluorine-containing compounds have been studied by the electron impact/Fourier transfer ion cyclotron resonance mass spectrometry (EI/FTICRMS). Comparing the reaction of the standard sample perfluorotributylamine (PFTBA), in the case of 3-oxa-5-iodo-octafluoropentylsulfonyl azide (ICF₂CF₂OCF₂CF₂SO₂N₃), a series of addition-elimination products and loss 28 from the expected adducts were obtained. A possible reaction mechanism was discussed, which was consistent with the results obtained in the condensed phase. These results demonstrated that EI/FTICRMS is a complementary technique for study of the organic reactions.     

High-throughput mass spectrometry: the mechanism of sudan azo dye fragmentation by ESI tandem mass spectrometry and extensive deuterium labeling experiments

The investigation of the gas-phase chemistry of azo compounds by mass spectrometry dates back to the introduction of this peculiar research field into the armory of physical organic chemistry tools. The mechanism of the fragmentation of the azo double bond from the protonated precursor is discussed with reference to the behavior of deuterium-labeled reference compounds. The investigated molecules belong to the sudan family and the results can be used for the detection of these potential carcinogenic compounds in different matrices by means of the isotope dilution method.     

Electrophilic aromatic substitution and single-electron transfer (SET) by the phenylium ion in the gas phase: characterization of a long-lived SET intermediate

Gas-phase mass spectrometric studies and calculations were performed for the reaction of naked phenylium ion with several benzene halides. From these reactions, the molecular ion for biphenyl as the predominant product was obtained only from the reaction of phenylium ions with iodobenzene and bromobenzene. Furthermore, through the collision-induced dissociation (CID) of the ion at m/z 281, the only dissociation observed is the loss of a phenyl radical, which indicates that a single-electron transfer (SET) mechanism might have occurred within the reaction. Additionally, according to the comparison between the CID experiments of those isomeric compounds of the sigma-complexes and the CID experiment of the ion at m/z 281 captured in the ion trap, we have also defined the captured ion at m/z 281 as an SET-intimate ion pair rather than those of sigma-complexes or the diphenyliodonium.