Theoretical study of the structure and water affinity of [M(18C6)(HFA)<Subscript>2</Subscript>] complexes for M = Zn,Cu, Hg,Co, Ni,and Pt

The structures of the [M(18C6)]²⁺ cations, where M = Zn, Cu, Hg, Ni, Co, and Pt, and cis- and trans-[M(18C6)(HFA)₂]/[M(18C6)(NO₃)₂] molecules in the gas phase have been calculated by the density functional theory method in the B3LYP/6-31G*//6-311++G** + LanL2Dz approximation. Geometry optimization has been performed, and the strength of binding of the central cation to the crown ether (18C6) and the degree of structural similarity of the [M(18C6)(HFA)₂] compounds for different central atoms M have been evaluated. For all [M(18C6)(NO₃)₂]/[M(18C6)(HFA)₂] molecules (M = Zn, Cu, Hg, Ni, Co, Pt), the vertical ionization potential and the vertical electron affinity have been calculated. These parameters are of interest for analysis of the stability of volatile compounds [M(18C6)(HFA)₂] to donor–acceptor interactions with other components of the gas phase, for example, with water vapor, which is usually a Lewis base with respect to the systems in question and can donate electron density in the course of complexation with the central atom. The propensity of the [M(18C6)(NO₃)₂]/[M(18C6)(HFA)₂] molecules to react with water is considered for a wider range of metals M²⁺ = Ba²⁺, Sr²⁺, Pb²⁺, Mn²⁺, Cd²⁺, Zn²⁺, Cu²⁺, Hg²⁺, Co²⁺, Ni²⁺, and Pt²⁺, with taking into account the degree of matching between the ionic radii of M²⁺ cations and the 18C6 cavity size.     

Crystal structure of tris(ethylenediamine)cobalt(III) (aqua)hexachloromercurate(II) chloride [Co(En)3]2[Hg2(H2O)Cl6]Cl4

The compound [Co(En)₃]₂[Hg₂(H₂O)Cl₆]Cl₄ (I, En is ethylenediamine) has been synthesized and studied by X-ray diffraction. The crystals of I (a = 21.8745(14) Å, b = 10.6008(6) Å, c=15.4465(12) Å, space group Pna2₁) consist of tris(ethylenediamine)cobalt(III) complexes (the unit cell contains two [Co(En)₃]³⁺ cations of opposite chirality). [Hg₂(H₂O)Cl₆]^2? anions, and isolated chloride ions. The complex anion consists of the tetrahedral [HgCl₄]^2? group (Hg-Cl, 2.44–2.56 Å) and the hydrated molecule [Hg(H₂O)Cl₂] (Hg-Cl, 2.301 and 2.308 Å; Hg-O, 2.788 Å) combined by weak Hg-Cl interactions (2.915 and 3.220 Å).     

Unimolecular and hydrolysis channels for the detachment of water from microsolvated alkaline earth dication (Mg2+, Ca2+, Sr2+, Ba2+) clusters

We examine theoretically the three channels that are associated with the detachment of a single water molecule from the aqueous clusters of the alkaline earth dications, [M(H₂O) _n ]²⁺, M = Mg, Ca, Sr, Ba, n ≤ 6. These are the unimolecular water loss (M²⁺(H₂O) _n?1 + H₂O) and the two hydrolysis channels resulting the loss of hydronium ([MOH(H₂O) _n?2]⁺ + H₃O⁺) and Zundel ([MOH(H₂O) _n?3]⁺ + H₃O⁺(H₂O)) cations. Minimum energy paths (MEPs) corresponding to those three channels were constructed at the Møller–Plesset second order perturbation (MP2) level of theory with basis sets of double- and triple-ζ quality. We furthermore investigated the water and hydronium loss channels from the mono-hydroxide water clusters with up to four water molecules, [MOH(H₂O) _n ]⁺, 1 ≤ n ≤ 4. Our results indicate the preference of the hydronium loss and possibly the Zundel-cation loss channels for the smallest size clusters, whereas the unimolecular water loss channel is preferred for the larger ones as well as the mono-hydroxide clusters. Although the charge separation (hydronium and Zundel-cation loss) channels produce more stable products when compared to the ones for the unimolecular water loss, they also require the surmounting of high-energy barriers, a fact that makes the experimental observation of fragments related to these hydrolysis channels difficult.     

Studies on 4-(2-thiazolyl)-1-(2-acetylpyridine)thiosemicarbazone complexes of some bivalent metal ions

Summary Complexes [VO(Htaptsc)SO₄] and [M(Htaptsc)₂Cl₂] [M=Mn^II, Ni^II, Cd^II or Hg^II], Cu(Htaptsc)Cl₂ and [M(Htaptsc)Cl₂] [M=Co^II or Zn^II], and deprotonated compounds Co(taptsc)₂ and [M(taptsc)₂] [M=V^IVO, Mn^II, Ni^II, Cu^II or Zn^II] [Htaptsc=4-(2-thiazolyl)-1-(2-acetylpyridine)thiosemicarbazone] have been characterized by elemental analyses, electrical conductivity and magnetic susceptibility measurements and electronic, e.s.r. and i.r. spectroscopy. The bonding sites of Htaptsc and the bonding and stereochemistry of the complexes are discussed.     

Studies on 4-(2-thiazolyl)-1-(2,6-diacetylpyridine)thiosemicarbazone complexes of some bivalent metal ions

Summary Complexes of 4-(2-thiazolyl)-1-(2,6-diacetylpyridine)-thiosemicarbazone, H₂C₃NSCNH(S)NHNCMeC₅H₃N-C(O)Me (Htdaptsc) of the compositions [M(Htdaptsc)₂Cl₂] [M=Mn^II, Co^II, Ni^II or Zn^II] [M(Htdaptsc)Cl₂] [M=Zn^II, Cd^II or Hg^II] and [M(tdaptsc)₂] [M=Mn^II, Co^II, Ni^II, Cu^II, or Zn^II] have been prepared and characterized by elemental analyses, molar conductance, magnetic susceptibility, electronic, e.s.r. and i.r. studies, and their stereochemistries are discussed.     

Double carbon-halogen bond in the compounds H2CX+, H2CCX+, and H2BCX (X = F, Cl)

The structure of formaldehyde and ketene analogs H₂CX and H₂CCX (X = O, F⁺, Ne²⁺, S, Cl⁺, Ar²⁺), and also of boron-containing compounds H₂BCX (X = F, Cl), was studied by ab initio [CCD(full)/6-311+G**] and DFT (B3LYP/6-311+G**) calculations. In all the halogen-containing species except H₂BCF, a double carbon-halogen bond is formed.Translated from Zhurnal Obshchei Khimii, Vol. 74, No. 10, 2004, pp. 1649–1654.Original Russian Text Copyright © 2004 by Minyaev, Gribanova.This revised version was published online in April 2005 with a corrected cover date.     

Über die Struktur vonM(BF4)2·6H2O fürM=Mg2+, Zn2+, Cd2+

The IR and Raman spectra ofM(BF₄)₂·6H₂O forM=Mg²⁺, Zn²⁺ and Cd²⁺ in the range 4000–140 cm^?1 were recorded, as were theirDTA andTG curves up to 500°C. The data obtained confirm the presence of the water complex [M(H₂O)₆]²⁺ and of the complex anion BF₄ ^? in these compounds. It was also established that the six water molecules in Mg(BF₄)₂·6H₂O and in Zn(BF₄)₂·6H₂O are not crystallographically equivalent, and that hydrogen bonds of the type H₂O...H₂O...F₄B and H₂O...H₂O...H₂O participate in the structure. The energy of the hydrogen bonds H₂O...F₄B for the three crystal hydrates was also calculated. The thermal and thermogravimetric data are in agreement with and confirm the spectroscopic data.     

Gas phase and solution state stability of complexes L…M, where M = Cu, Ni, or Zn and L = R−C(O)NHOH (R = H, NH2, CH3, CF3, or Phenyl)

The structure and gas-phase metal affinities (M = Cu²⁺, Ni²⁺, and Zn²⁺) of formohydroxamic acid derivatives R–C(O)NHOH (R = H, NH₂, CH₃, CF₃ and Phenyl) were studied using the B3LYP/6-311+G(d,p) method of DFT theory. In order to evaluate the conformational behavior of these systems in water, we carried out CPCM-SCRF optimization calculations at the B3LYP/6-311+G(d,p) levels of theory. The obtained optimized geometries and interaction affinities of the gas and solution phase were compared. The following order of stability was found for ionic complexes of the transition metals: Cu²⁺ > Ni(t)²⁺ > Zn²⁺. The same stability order would be expected according to the Irving–Williams order of stability constants. The high-spin complexes of the Ni²⁺ were more stable than the low-spin complexes. The solvent effect reduced the observed relative stability of individual metallic complexes of substituted hydroxamic acids.     

A new Hg2+ fluorescent sensors based on 1,3-alternate thiacalix[4]arene (L) and the complex of [L+Hg2+] as turn-on sensor for cysteine

A new thiacalix[4]arene derivative in a 1,3-alternate conformation bearing four naphthalene groups through crown-3 chains has been synthesized, which exhibits high selectivity toward Hg²⁺ by forming a 1:2 complex, among other metal ions ( Na⁺, K⁺, Mg²⁺, Ba²⁺, Ca²⁺, Sr²⁺, Cs⁺, Mn²⁺, Fe²⁺, Cd²⁺, Co²⁺, Ni²⁺, Cu²⁺, Li⁺, and Zn²⁺) with a low detection limit (3.30×10^?7 M). The metal ion-binding properties were studied by fluorescence, AFM, and ¹H NMR spectroscopy. The in situ prepared [Hg²⁺+L] complex shows well recognition ability for cysteine with a low detection limit (2.23×10^?7 M) through fluorescence turning on. The mechanism of fluorescence turning on is the host L releasing from [L+Hg²⁺] for [Cys+Hg²⁺] complex formed. Thus the paper reports secondary-sensor design: Hg²⁺ as a first sensor for [L+Hg²⁺] form, cysteine as a second sensor for Hg²⁺ releasing from the [L+Hg²⁺] complex after cysteine adding in.     

Ligand‐Exchange Processes on Solvated Beryllium Cations. Part III

On the basis of DFT calculations (B3LYP/6‐311+G**), the possibility to include solvent effects is considered in the investigation of the H₂O‐exchange mechanism on [Be(H₂O)₄]²⁺ within the widely used cluster approach. The smallest system in the gas phase, [Be(H₂O)₄(H₂O)]²⁺, shows the highest activation barrier of +15.6 kcal/mol, whereas the explicit addition of five H‐bonded H₂O molecules in [{Be(H₂O)₄(H₂O)}(H₂O)₅]²⁺ reduces the barrier to +13.5 kcal/mol. Single‐point calculations applying CPCM (B3LYP(CPCM:H₂O)/6‐311+G**//B3LYP/6‐311+G**) on [Be(H₂O)₄(H₂O)]²⁺ lower the barrier to +9.6 kcal/mol. Optimization of the precursor and transition state of [Be(H₂O)₄(H₂O)]²⁺ within an implicit model (B3LYP(CPCM:H₂O)/6‐311+G** or B3LYP(PCM:H₂O)/6‐311+G**) reduces the activation energy further to +8.3 kcal/mol but does not lead to any local minimum for the precursor and is, therefore, unfavorable.     

金属离子(Na~+、K~+、Ca~(2+)、Mg~(2+)、Zn~(2+))与鸟嘌呤异构体配合物的稳定性

在B3LYP/6-311++G**水平上用极化连续介质模型(PCM)系统研究了金属离子(M+/2+=Na+,K+,Ca2+,Mg2+,Zn2+)和十三种鸟嘌呤异构体形成的配合物GnxM+/2+(n为鸟嘌呤异构体的编号,x表示M+/2+与鸟嘌呤异构体的结合位点)在气(g)液(a)两相中的稳定性顺序.着重探讨了液相中配合物的稳定性差异,并且从溶质-溶剂效应、结合能、形变能及异构体的相对能量等几个方面分析了造成稳定顺序发生变化的原因.报道了溶液中这五种金属离子与鸟嘌呤异构体结合形成的六种基态配合物:aG1N2,N3Na+,aG1N2,N3K+,aG1O6,N7Ca2+,aG1N2,N3Mg2+(aG1O6,N7Mg2+),aG2N3,N9Zn2+.可以看出,除了在Zn2+配合物中鸟嘌呤异构体为G2外,构成其余四种金属离子配合物的鸟嘌呤异构体都是G1,但结合位点不同.同时对气相中各类配合物稳定性也进行了系统的排序,并报道了几种较稳定的配合物,如:gG3N1,O6K+,gG5N1,O6K+,gG3N1,O6Ca2+/Mg2+,gG4O6,N7Ca2+/Mg2+.     

Preparation and Crystal Structures of the Hydrous Mercury Tellurates,HgII(H4TeVIO6) and HgI2(H4TeVIO6)(H6TeVIO6)·2H2O

Single crystals of Hg^II(H₄Te^VIO₆) (colourless to light‐yellow, rectangular plates) and Hg^I₂(H₄Te^VIO₆)(H₆Te^VIO₆)·2H₂O (colourless, irregular) were grown from concentrated solutions of orthotelluric acid, H₆TeO₆, and respective solutions of Hg(NO₃)₂ and Hg₂(NO₃)₂. The crystal structures were solved and refined from single crystal diffractometer data sets (Hg^II(H₄Te^VIO₆): space group Pna2₁, Z = 4, a =10.5491(17), b = 6.0706(9), c = 8.0654(13)Å, 1430 structure factors, 87 parameters, R[F² > 2σ(F²)] = 0.0180; Hg^I₂(H₄Te^VIO₆)(H₆Te^VIO₆)·2H₂O: space group P1¯, Z = 1, a = 5.7522(6), b = 6.8941(10), c = 8.5785(10)Å, α = 90.394(8), β = 103.532(11), γ = 93.289(8)°, 2875 structure factors, 108 parameters, R[F² > 2σ(F²)] = 0.0184). The structure of Hg^II(H₄Te^VIO₆) is composed of ribbons parallel to the b axis which are built of [H₄TeO₆]^2— anions and Hg²⁺ cations held together by two short Hg—O bonds with a mean distance of 2.037Å. Interpolyhedral hydrogen bonding between neighbouring [H₄TeO₆]^2— groups, as well as longer Hg—O bonds between Hg atoms of one ribbon to O atoms of adjacent ribbons lead, to an additional stabilization of the framework structure. Hg^I₂(H₄Te^VIO₆)(H₆Te^VIO₆)·2H₂O is characterized by a distorted hexagonal array made up of [H₄TeO₆]^2— and [H₆TeO₆] octahedra which spread parallel to the bc plane. Interpolyhedral hydrogen bonding between both building units stabilizes this arrangement. Adjacent planes are stacked along the a axis and are connected by Hg₂²⁺ dumbbells (d(Hg—Hg) = 2.5043(4)Å) situated in‐between the planes. Additional stabilization of the three‐dimensional network is provided by extensive hydrogen bonding between interstitial water molecules and O and OH‐groups of the [H₄TeO₆]^2— and [H₆TeO₆] octahedra. Upon heating Hg^I₂(H₄Te^VIO₆)(H₆Te^VIO₆)·2H₂O decomposes into TeO₂ under formation of the intermediate phases Hg^II₃Te^VIO₆ and the mixed‐valent Hg^IITe^IV/VI₂O₆.     

Complexes of Group 12 Metal Dihalides with 2‐Acetylpyridine‐N‐oxide 4N‐methylthiosemicarbazone (H4MLO). The Crystal Structures and Organization of [Zn(H4MLO)X2] (X = Br,I)

Reaction of group 12 metal dihalides with 2‐acetylpyridine‐N‐oxide ⁴N‐methylthiosemicarbazone (H4MLO) in ethanol afforded compounds [M(H4MLO)X₂] (M = Zn^II, Cd^II, Hg^II; X = Cl, Br, I), the structures of which were characterized by elemental analysis and by IR and ¹H and ¹³C NMR spectroscopy. In addition, the complexes of ZnBr₂ and ZnI₂ were analysed structurally by X‐ray diffractometry. In [Zn(H4MLO)Br₂] the ligand is O,N,S‐tridentate and the metal is pentacoordinated, while in [Zn(H4MLO)I₂] the thiosemicarbazone is S,O‐bis‐monodentate and the Zn^II cation has a distorted tetrahedral coordination polyhedron. In assays of antifungal activity against Aspergillus niger and Paecilomyces variotii, only the mercury compounds showed any activity, and only [Hg(H4MLO)Cl₂] and [Hg(H4MLO)I₂] were competitive with nystatin against A. niger.     

Synthesis,spectroscopic characterization and study the effect of gamma irradiation on VO2+, Mn2+, Zn2+, Ru3+, Pd2+, Ag+ and Hg2+ complexes and antibacterial activities

Novel complexes of VO²⁺, Mn²⁺, Zn²⁺, Ru³⁺, Pd²⁺, Ag⁺ and Hg²⁺ have been prepared by reacting their metal salts with ligand, named (4-(4-chlorophenyl)-1-(2-(phenylamino) acetyl) thiosemicarbazone). Study of synthesized metal complexes was confirmed by different analytical and spectral techniques (¹H NMR, MS, FT-IR, UV–Vis, EPR and Powder X-ray diffraction), thermogravimetric studies as well as molecular modeling. FT-IR spectra showed that the compound behave as neutral or monobasic tetradentate. In case of complexes of Mn²⁺, Zn²⁺, Ag⁺ and VO²⁺, through (N2H), (CO) or (CO) groups. While, the ligand behave as neutral bidentate in case of complexes with Pd²⁺ and Hg²⁺. X-ray diffraction pattern of Mn²⁺, Pd²⁺ and Ag⁺ complexes before and after irradiation are recorded. XRD studies exhibited that decrease in the crystalline size of sample Mn²⁺ as compared of samples Ag⁺ and Pd²⁺ upon irradiation and irradiation influenced the crystallinity of the complexes. The possible structures of the ligand, Mn²⁺, Pd²⁺ and Hg²⁺complexes have been computed by means of the molecular mechanic calculations using the hyper chem. 8.03 molecular modeling program. The bond length, bond angle, HOMO, LUMO and dipole moment have been studied to verify the geometry of Mn²⁺, Pd²⁺ and Hg²⁺ complexes. The effect of gamma irradiation was investigated by recording the new results of pervious spectroscopic techniques and other measurements. Thermal studies of these chelates before and after γ-irradiation showed that the complexes after γ-irradiation were more thermally stable than before γ-irradiation. The compound and its metal complexes have been experienced for their inhibitory outcome on the growth of microorganisms against gram positive and gram negative. The results proved that the complexes B₁–B₇ have potent antibacterial activity as compared to that of ligand.     

Preparation,Single Crystal Structure Analysis,and Thermal Behaviour of the Acidic Mercury(I) Phosphate (Hg2)2(H2PO4)(PO4)

Yellowish single crystals of acidic mercury(I) phosphate (Hg₂)₂(H₂PO₄)(PO₄) were obtained at 200 °C under hydrothermal conditions in 32% HF from a starting complex of microcrystalline (Hg₂)₂P₂O₇. Refinement of single crystal data converged at a conventional residual R[F² > 2σ(F²)] = 3.8% (C2/c, Z = 8, a = 9.597(2) Å, b = 12.673(2) Å, c = 7.976(1) Å, β = 110.91(1)°, V = 906.2(2) ų, 1426 independent reflections > 2σ out of 4147 reflections, 66 variables). The crystal structure consists of Hg₂²⁺‐dumbbells and discrete phosphate groups H₂PO₄^– and PO₄^3–. The Hg₂²⁺ pairs are built of two crystallographically independent Hg atoms with a distance d(Hg1–Hg2) = 2.5240(6) Å. The oxygen coordination sphere around the mercury atoms is asymmetric with three O atoms for Hg1 and four O atoms for Hg2. The oxygen atoms belong to the different PO₄ tetrahedra, which in case of H₂PO₄‐groups are connected by hydrogen bonding. Upon heating over 230 °C, (Hg₂)₂(H₂PO₄)(PO₄) condenses to (Hg₂)₂P₂O₇, which in turn disproportionates at higher temperatures into Hg₂P₂O₇ and elemental mercury.     

Studies on 2-acetylthiophene-2-furoylhydrazone complexes of 3d-bivalent metal ions

Summary Metal(II) complexes of 2-acetylthiophene-2-furoylhydrazone (HL) of the types [VO(HL)SO₄], [Cu(HL)₂Cl₂(H₂O)], [M(HL)₂Cl₂] [M=Co^II, Ni^II, or Zn^II] and [ML₂(H₂O)₂] [M=Co^II, Ni^II, Cu^II or Zn^II] have been prepared and characterized on the basis of elemental analyses, molar conductance, magnetic susceptibility, visible, e.s.r. and i.r. spectral studies. The bonding and stereochemistry of the complexes are discussed.     

X-ray diffraction and vibrational spectroscopic studies of indolecarboxylic acids and their metal complexes: Part VII. Indole-2-carboxylic acid and catena-poly[[diaquazinc(II)]-bis(μ2-indole-2-carboxylato-O:O′)]

The catena-poly[[diaquazinc(II)]-bis(μ²-indole-2-carboxylato-O:O′)], [Zn(I2CA)₂(H₂O)₂]_n has been synthesized and characterized by X-ray diffraction analysis and the infrared and Raman spectroscopic methods. The co-ordination of the indole-2-carboxylate anion to Zn(II) results in the formation of the [Zn(I2CA)₂(H₂O)₂]_n, in which the Zn(II) cations lie on inversion centres in space group P2_1/c, with water ligands in the apical sites of octahedral geometry. Moreover, the infrared and Raman spectra of indole-2-carboxylic acid (I2CA) and the infrared spectrum of deuterated derivative of indole-2-carbocylic acid (I2CA-d2) are recorded in the solid phase. The theoretical wavenumbers, infrared intensities and Raman scattering activities were calculated by density functional B3LYP and mPW1PW91 methods with the 6-311++G(d,p) basis set for I2CA and I2CA-d2 and with the 6-311++G(d,p)/LanL2DZ basis sets for the theoretical model of Zn(I2CA)₂(H₂O)₂]_n. The detailed vibrational assignment has been made on the basis of the calculated potential energy distribution for all molecules.     

QM and QM/MM umbrella sampling MD study of the formation of Hg(II)–thymine bond: Model for evaluation of the reaction energy profiles in solutions with constant pH

The formation of the Hg–N3(T) bond between the 1-methylthymine (T) molecule and the hydrated Hg²⁺ cation was explored with the combined quantum mechanics/molecular mechanics (QM/MM) method including Free Energy Perturbation corrections. The thermodynamic properties were determined in the whole pH range, when these systems were explicitly investigated and considered as the QM part: (1) T + [Hg(H₂O)₆]²⁺, (2) T + [Hg(H₂O)₅(OH)]⁺, (3) T + Hg(H₂O)₄(OH)₂, and (4) N3-deprotonated T + Hg(H₂O)₄(OH)₂. The MM part contained only solvent molecules and counterions. As a result, the dependence of Gibbs-Alberty reaction free energy on pH was obtained along the reaction coordinate. We found that an endoergic reaction in acidic condition up to pH < 4–5 becomes exoergic for a higher pH corresponding to neutral and basic solutions. The migration of the Hg²⁺ cation between N3 and O4/2 positions in dependence on pH is discussed as well. For the verification, DFT calculations of stationary points were performed confirming the qualitative trends of QM/MM MD simulations and NMR parameters were determined for them.     

Polymeric complexes of bivalent transition metal ions with 2-hydroxy-1-naphthaldehyde oxaldihydrazone and 2-hydroxy-1-naphthaldehyde malondihydrazone

Summary Polymeric complexes prepared by solid-solution reactions, from 2-hydroxy-1-naphthaldehyde oxaldihydrazone (HNODH) and 2-hydroxy-1-naphthaldehyde malondihydrazone (HNMDH), had the empirical composition M(L-2H)·nH₂O where M=Fe^II, Mn^II, Co^II, Ni^II, Cu^II, Zn^II, Cd^II and Hg^II; L=HNODH, HNMDH andn=0,1, 2. The complexes, which are intensely coloured and insoluble in common organic solvents, were characterized by elemental analysis, magnetic susceptibility, electronic and i.r. spectral data. The absence of anions indicates that the ligands which bind the metal ions from the hydroxyl and the imino groups have been deprotonated.