Gas phase reactions between acetylene radical cation and water. energies, structures and formation mechanism of C2H3O+ and C2H4O+* ions

Reactions of the acetylene radical cation (C2H2(+*)) with H2O were investigated using ion mobility mass spectrometry. The primary products are the C2H3O(+) and C2H4O(+*) ions, produced with an overall rate coefficient k(300 K) = 2(+/-0.6) x 10(-11) cm(3) s(-1) that increases with decreasing temperature. The C2H4O(+*) (adduct) vs C2H3O(+) (H loss) ratio also increases with decreasing temperature, and with increasing third-body pressure. Ab initio calculations on the products showed seven stable C2H3O(+) isomers and eleven stable C2H4O(+*) isomers. In the C2H4O(+*) adduct channel, the reactivity and energetics suggest that the adduct is the H2C=CHOH(+*) (vinyl alcohol) ion. In the C2H3O(+) channel, the H loss occurs exclusively from water. The C2H3O(+) product ion undergoes slow deprotonation by water to form H(+)(H2O)n clusters. The reactivity, combined with energetics, suggests that the protonated ketene CH2COH(+) is the most likely observed C2H3O(+) ion probably with some contribution from the cyclic c-CH2CHO(+) ion.     

First generation and characterization of the enol of glycine, H(2)N--CH=C(OH)(2), in the gas phase

The enol of glycine, H(2)N-CH&dbond;C(OH)(2), is generated in the gas phase by neutralization of the corresponding radical cation, which is available by dissociative electron ionization of isoleucine. Reionization approximately 0.6 micros later shows that the isolated enol (2) exists and does not isomerize to the significantly more stable glycine molecule, H(2)N--CH(2)--COOH (1); hence the intramolecular tautomerization 2-->1 must be associated with high barriers. The neutralization-reionization reactivity of 1(+*) further confirms that neutral glycine has a canonical structure (1) and is not a zwitterion. The unimolecular chemistry of 1(+*) is dominated by C--C bond cleavage to the immonium ion (+)H(2)NCH(2); in sharp contrast, 2(+*) primarily loses H(2)O. The ylide ion (+)H(3)N--CH(*)--COOH, an intermediate in the water loss from 2(+*), is found to readily equilibrate to 2(+*) prior to dissociation. Tautomers 1(+*) and 2(+*) differ in their charge-stripping behavior, with only 2(+*) forming a stable dication. The radical anions 1(-*) and 2(-*), formed by charge reversal of 1(+*) and 2(+*), respectively, dissociate extensively to (mainly) different closed-shell fragment anions. An important channel is H(*) loss; 1(-*) yields the carboxylate ion H(2)N--CH(2)--COO(-) whereas 2(-*) yields the enolate ion H(2)N--CH=C(OH)O(-).     

Dissociation of ionized benzophenones investigated by the kinetic method: effective temperature, steric effects and gas-phase CO+* affinities of phenyl radicals

Ionized benzophenones ([PhC(O)PhY](+*); Y = 4 - NO(2), 4 - CF(3), 4-F, 4-Br, 4-Me, 3,4-diMe, 4-OH, 4-OMe, 2-Cl, 2-Me, 2-OH, 2,6-diMe) undergo competitive dissociation upon collision-induced dissociation (CID) at 20 eV collision energy to generate benzoyl cations ([PhCO](+) and [YPhCO](+)) and phenyl radicals (Ph(*) and YPh(*)). For the para-substituted benzophenones, the natural logarithm of the abundance ratio of the benzoyl cations [ln([PhCO(+)]/[YPhCO(+)])] is found to correlate linearly with the calculated CO(+*) affinities of the phenyl radicals Ph(*) and YPh(*). A deviation from linearity is observed for the ortho-substituted isomers. This is probably due to a significant intramolecular steric interaction between the carbonyl group and the ortho substituent which prevents the formation of a stable planar system. An observed shift in the intercept relative to the origin is interpreted as the result of a systematic error in the calculated CO(+*) affinities and this effect is minimized by calculations at a higher level. The dissociation of ionized para-substituted benzophenones is associated with a relatively high effective temperature of 1816 +/- 41 K, calculated from the slope of the kinetic method plot, a value that is consistent with a covalent bond in the activated ion. In addition, Delta(DeltaS(CO(+) )), the dissociation entropy of the benzoyl cations to form CO(+*) and the aryl radical, is found to be about 4 J mol(-1) K(-1) by employing the extended version of the kinetic method.     

Theoretical study of the benzyl+O2 reaction: kinetics, mechanism, and product branching ratios

Ab initio calculations at the level of CBS-QB3 theory have been performed to investigate the potential energy surface for the reaction of benzyl radical with molecular oxygen. The reaction is shown to proceed with an exothermic barrierless addition of O2 to the benzyl radical to form benzylperoxy radical (2). The benzylperoxy radical was found to have three dissociation channels, giving benzaldehyde (4) and OH radical through the four-centered transition states (channel B), giving benzyl hydroperoxide (5) through the six-centered transition states (channel C), and giving O2-adduct (8) through the four-centered transition states (channel D), in addition to the backward reaction forming benzyl radical and O2 (channel E). The master equation analysis suggested that the rate constant for the backward reaction (E) of C6H5CH2OO-->C6H5CH2+O2 was several orders of magnitude higher that those for the product dissociation channels (B-D) for temperatures 300-1500 K and pressures 0.1-10 atm; therefore, it was also suggested that the dissociation of benzylperoxy radicals proceeded with the partial equilibrium between the benzyl+O2 and benzylperoxy radicals. The rate constants for product channels B-D were also calculated, and it was found that the rate constant for each dissociation reaction pathway was higher in the order of channel D>channel C>channel B for all temperature and pressure ranges. The rate constants for the reaction of benzyl+O2 were computed from the equilibrium constant and from the predicted rate constant for the backward reaction (E). Finally, the product branching ratios forming CH2O molecules and OH radicals formed by the reaction of benzyl+O2 were also calculated using the stationary state approximation for each reaction intermediate.     

What ion is generated when ionizing acetonitrile?

It has long been assumed that ionizing neutral acetonitrile produces ions with the same atomic connectivity, CH(3)CN(+*). Recent calculations on the C(2)H(3)N(+*) potential energy surface have suggested that it may be difficult to generate pure CH(3)CN(+*) when ionizing acetonitrile. We have probed the interconversion of CH(3)CN(+*) and its lower energy isomer CH(2)CNH(+*) by calculation, collision-induced dissociation mass spectrometry and ion-molecule reaction. The latter ion, ionized ketenimine, is co-generated upon electron or chemical ionization of neutral acetonitrile in the ion source of a mass spectrometer. An estimate of the ratio of the two isomers can be obtained from their respective ion-molecule reactions with CO(2) or COS. CH(3)CN(+*) reacts by proton-transfer with CO(2) and charge transfer with COS, whereas CH(2)CNH(+*) is unreactive.     

Water-assisted interconversions and dissociations of the acetaldehyde ion and its isomers. An experimental and theoretical study

The gas-phase reactions of the ion [CH(3)CHO/H(2)O](+*) have been investigated by mass spectrometry. The metastable ion (MI) mass spectrum reveals that this ion-molecule complex decomposes spontaneously by the losses of H(2)O, CO, and (*)CH(3). The structures of stable complexes and transition states involved in the potential energy surface (PES) have been studied by the G3//B3-LYP/6-31+G(d) computational method. Hydrogen-bridged water complexes have been found to be the major products of the losses of CO and (*)CH(3). The CO loss produces the [(*)CH(3)...H(3)O(+)] ion and involves a "backside displacement" mechanism. The products corresponding to (*)CH(3) loss have been assigned by theory to be [OC...H(3)O(+)] and [CO...H(3)O(+)], and their 298 K enthalpy values, calculated at the G3 level of theory, are Delta(f)H[OC...H(3)O(+)] = 420 kJ/mol and Delta(f)H[CO...H(3)O(+)] = 448 kJ/mol. The PES describing the interconversions among water-solvated CH(3)CHO(+*), CH(3)COH(+*), and CH(2)CHOH(+*) have been shown to involve proton-transport catalysis (PTC), catalyzed 1,2 H-transfer, and an uncatalyzed H-atom transfer mechanism, respectively.     

Thermochemistry of N-N containing ions: a threshold photoelectron photoion coincidence spectroscopy study of ionized methyl- and tetramethylhydrazine

The unimolecular dissociation reactions of the methylhydrazine (MH) and tetramethylhydrazine (TMH) radical cations have been investigated using tandem mass spectrometry and threshold photoelectron photoion coincidence spectroscopy in the photon energy ranges 9.60-31.95 eV (for the MH ion) and 7.74-29.94 eV (for the TMH ion). Methylhydrazine ions (CH3NHNH2(+*)) have three low-energy dissociation channels: hydrogen atom loss to form CH2NHNH2(+) (m/z 45), loss of a methyl radical to form NHNH2(+) (m/z 31), and loss of methane to form the fragment ion m/z 30, N2H2(+*). Tetramethylhydrazine ions only exhibit two dissociation reactions near threshold: that of methyl radical loss to form (CH3)2NNCH3(+) (m/z 73) and of methane loss to form the fragment ion m/z 72 with the empirical formula C3H8N2(+*). The experimental breakdown curves were modeled with Rice-Ramsperger-Kassel-Marcus theory, and it was found that, particularly for methyl radical loss, variational transition state theory was needed to obtain satisfactory fits to the data. The 0 K enthalpies of formation (delta(f)H0) for all fragment ions (m/z 73, m/z 72, m/z 45, m/z 31, and m/z 30) have been determined from the 0 K activation energies (E0) obtained from the fitting procedure: delta(f)H0[(CH3)2NNCH3(+)] = 833 +/- 5 kJ mol(-1), delta(f)H0 [C3H8N2(+*)] = 1064 +/- 5 kJ mol(-1), delta(f)H0[CH2NHNH2(+)] = 862 +/- 5 kJ mol(-1), delta(f)H0[NHNH2(+)] = 959 +/- 5 kJ mol(-1), and delta(f)H0[N2H2(+*)] = 1155 +/- 5 kJ mol(-1). The breakdown curves have been measured from threshold up to h nu approximately 32 eV for both hydrazine ions. As the photon energy increases, other dissociation products are observed and their appearance energies are reported.     

Vibrational distributions of the CO(v) products of the C2H2 + O(3P) and HCCO + O(3P) reactions studied by FTIR emission

The C2H2 + O(3P) and HCCO + O(3P) reactions are investigated using Fourier transform infrared (FTIR) emission spectroscopy. The O(3P) radicals are produced by 193 nm photolysis of an SO2 precursor or microwave discharge in O2. The HCCO radical is either formed in the first step of the C2H2 + O(3P) reaction or by 193 nm photodissociation of ethyl ethynyl ether. Vibrationally excited CO and CO2 products are observed. The microwave discharge experiment [C2H2 + O(3P)] shows a bimodal distribution of the CO(v) product, which is due to the sequential C2H2 + O(3P) and HCCO + O(3P) reactions. The vibrational distribution of CO(v) from the HCCO + O(3P) reaction also shows its own bimodal shape. The vibrational distribution of CO(v) from C2H2 + O(3P) can be characterized by a Boltzmann plot with a vibrational temperature of approximately 2400 +/- 100 K, in agreement with previous results. The CO distribution from the HCCO + O(3P) reaction, when studied under conditions to minimize other processes, shows very little contamination from other reactions, and the distribution can be characterized by a linear combination of Boltzmann plots with two vibrational temperatures: 2320 +/- 40 and 10 300 +/- 600 K. From the experimental results and previous theoretical work, the bimodal CO(v) distribution for the HCCO + O(3P) reaction suggests a sequential dissociation process of the HC(O)CO++ --> CO + HCO; HCO --> H + CO.     

High-energy collisional activation of the molecular ions of thiophene-2-one with different target gases

Collisional activation of keV thiophene-2-one radical cations 1(+*) with O(2) or NO(*) as the target gas leads to a desulfuration reaction. This peculiar reaction is insignificant or absent with other targets such as helium, argon, methane or nitrogen. The radical cations produced in this desulfuration reaction are most probably vinylketene ions, as indicated by a triple mass spectrometric (MS/MS/MS) experiment performed on a 'hybrid' tandem mass spectrometer of sector--quadrupole--sector configuration. Tentatively, it is proposed that population of an excited state accounts for the non-ergodic behavior of 1(+*) upon collision with oxygen or nitric oxide. Ab initio molecular orbital calculations using molecular orbital theory (UMP2, UCCSD(T)) and density functional theory (B3LYP) with 6--31G(d,p) and 6--311++G(d,p) basis sets were used to evaluate the relative energy of the excited quartet state of 1(+*) radical cations. This quartet state is calculated to lie about 3.6 eV above the (2)A(") ground state and 0.9 eV above the C(4)H(4)O(+*)+S dissociation products. It is proposed that the quartet ion serves as the precursor for the spontaneous desulfuration.     

Heats of formation of the propionyl ion and radical and 2,3-pentanedione by threshold photoelectron photoion coincidence spectroscopy

The dissociative photoionization onsets for the formation of the propionyl ion (C(2)H(5)CO(+)) and the acetyl ion (CH(3)CO(+)) were measured from energy selected butanone and 2,3-pentanedione ions using the technique of threshold photoelectron photoion coincidence (TPEPICO) spectroscopy. Ion time-of-flight (TOF) mass spectra recorded as a function of the ion internal energy permitted the construction of breakdown diagrams, which are the fractional abundances of ions as a function of the photon energy. The fitting of these diagrams with the statistical theory of unimolecular decay permitted the extraction of the 0 K dissociation limits of the first and second dissociation channels. This procedure was tested using the known energetics of the higher energy dissociation channel in butanone that produced the acetyl ion and the ethyl radical. By combining the measured dissociative photoionization onsets with the well-established heats of formation of CH(3)(*), CH(3)CO(+), CH(3)CO(*), and butanone, the 298 K heats of formation, Delta(f)H degrees (298K), of the propionyl ion and radical were determined to be 618.6 +/- 1.4 and -31.7 +/- 3.4 kJ/mol, respectively, and Delta(f)H degrees (298K)[2,3-pentanedione] was determined to be -343.7 +/- 2.5 kJ/mol. This is the first experimentally determined value for the heat of formation for 2,3-pentanedione. Ab initio calculations at the Weizmann-1 (W1) level of theory predict Delta(f)H degrees (298K) values for the propionyl ion and radical of 617.9 and -33.3 kJ/mol, respectively, in excellent agreement with the measured values.     

Lactone enol cation-radicals: gas-phase generation,structure, energetics,and reactivity of the ionized enol of butane-4-lactone

The cation-radical of 2-hydroxyoxol-2-ene (1(+*)) represents the first lactone enol ion whose structure and gas-phase ion chemistry have been studied by experiment and theory. Ion 1(+*) was generated by the McLafferty rearrangement in ionized 2-acetylbutane-4-lactone and characterized by accurate mass measurements, isotope labeling, metastable ion and collisionally activated dissociation (CAD) spectra. Metastable 1(+*) undergoes competitive losses of H-4 and CO that show interesting deuterium and (13)C isotope effects. The elimination of CO from metastable 1(+*) shows a bimodal distribution of kinetic energy release and produces (*)CH(2)CH(2)CHdbond;OH(+) (14(+*)) and CH(3)CHdbond;CHOH(+*) (15(+*)) in ratios which are subject to deuterium isotope effects. Ab initio calculations at the G2(MP2) level of theory show that 1(+*) is 105 kJ mol(-1) more stable than its oxo form, [butane-4-lactone](+*)(2(+*)). The elimination of CO from 1(+*) involves multiple isomerizations by hydrogen migrations and proceeds through ion-molecule complexes of CO with 14(+*) and 15(+*). In addition, CO is calculated to catalyze an exothermic isomerization 14(+*) --> 15(+*) in the ion-molecule complexes. Multiple consecutive hydrogen migrations in metastable 1(+*), as modeled by RRKM calculations on the G2(MP2) potential energy surface, explain the unusual deuterium kinetic isotope effects on the CO elimination.     

Reaction mechanism of naphthyl radicals with molecular oxygen. 1. Theoretical study of the potential energy surface

Potential energy surfaces (PESs) of the reactions of 1- and 2-naphthyl radicals with molecular oxygen have been investigated at the G3(MP2,CC)//B3LYP/6-311G** level of theory. Both reactions are shown to be initiated by barrierless addition of O(2) to the respective radical sites of C(10)H(7). The end-on O(2) addition leading to 1- and 2-naphthylperoxy radicals exothermic by 45-46 kcal/mol is found to be more preferable thermodynamically than the side-on addition. At the subsequent reaction step, the chemically activated 1- and 2-C(10)H(7)OO adducts can eliminate an oxygen atom leading to the formation of 1- and 2-naphthoxy radical products, respectively, which in turn can undergo unimolecular decomposition producing indenyl radical + CO via the barriers of 57.8 and 48.3 kcal/mol and with total reaction endothermicities of 14.5 and 10.2 kcal/mol, respectively. Alternatively, the initial reaction adducts can feature an oxygen atom insertion into the attacked C(6) ring leading to bicyclic intermediates a10 and a10' (from 1-naphthyl + O(2)) or b10 and b10' (from 2-naphthyl + O(2)) composed from two fused six-member C(6) and seven-member C(6)O rings. Next, a10 and a10' are predicted to decompose to C(9)H(7) (indenyl) + CO(2), 1,2-C(10)H(6)O(2) (1,2-naphthoquinone) + H, and 1-C(9)H(7)O (1-benzopyranyl) + CO, whereas b10 and b10' would dissociate to C(9)H(7) (indenyl) + CO(2), 2-C(9)H(7)O (2-benzopyranyl) + CO, and 1,2-C(10)H(6)O(2) (1,2-naphthoquinone) + H. On the basis of this, the 1-naphthyl + O(2) reaction is concluded to form the following products (with the overall reaction energies given in parentheses): 1-naphthoxy + O (-15.5 kcal/mol), indenyl + CO(2) (-123.9 kcal/mol), 1-benzopyranyl + CO (-97.2 kcal/mol), and 1,2-naphthoquinone + H (-63.5 kcal/mol). The 2-naphthyl + O(2) reaction is predicted to produce 2-naphthoxy + O (-10.9 kcal/mol), indenyl + CO(2) (-123.7 kcal/mol), 2-benzopyranyl + CO (-90.7 kcal/mol), and 1,2-naphthoquinone + H (-63.2 kcal/mol). Simplified kinetic calculations using transition-state theory computed rate constants at the high-pressure limit indicate that the C(10)H(7)O + O product channels are favored at high temperatures, while the irreversible oxygen atom insertion first leading to the a10 and a10' or b10 and b10' intermediates and then to their various decomposition products is preferable at lower temperatures. Among the decomposition products, indenyl + CO(2) are always most favorable at lower temperatures, but the others, 1,2-C(10)H(6)O(2) (1,2-naphthoquinone) + H (from a10 and b10'), 1-C(9)H(7)O (1-benzopyranyl) + CO (from a10'), and 2-C(10)H(7)O (2-benzopyranyl) + O (from b10 and minor from b10'), may notably contribute or even become major products at higher temperatures.     

Unimolecular dissociation of protonated trans-1,4-diphenyl-2-butene-1,4-dione in the gas phase: rearrangement versus simple cleavage

Fragmentation mechanisms of trans-1,4-diphenyl-2-butene-1,4-dione were studied using a variety of mass spectrometric techniques. The major fragmentation pathways occur by various rearrangements by loss of H(2)O, CO, H(2)O and CO, and CO(2). The other fragmentation pathways via simple alpha cleavages were also observed but accounted for the minor dissociation channels in both a two-dimensional (2-D) linear ion trap and a quadrupole time-of-flight (Q-TOF) mass spectrometer. The elimination of CO(2) (rather than CH(3)CHO or C(3)H(8)), which was confirmed by an exact mass measurement using the Q-TOF instrument, represented a major fragmentation pathway in the 2-D linear ion trap mass spectrometer. However, the elimination of H(2)O and CO becomes more competitive in the beam-type Q-TOF instrument. The loss of CO is observed in both the MS(2) experiment of m/z 237 and the MS(3) experiment of m/z 219 but via the different transition states. The data suggest that the olefinic double bond in protonated trans-1,4-diphenyl-2-butene-1,4-dione plays a key role in stabilizing the rearrangement transition states and increasing the bond dissociation (cleavage) energy to give favorable rearrangement fragmentation pathways.     

Role of 2-oxo and 2-thioxo modifications on the fragmentation reactions of the histidine radical cation

The fragmentation reactions of the radical cations, M(·+), of histidine, 2-oxo-histidine and 2-thioxo-histidine were examined using a combination of experiments performed on a linear ion trap and density functional theory (DFT) calculations at the UB3-LYP/6-311++G(d,p) level of theory. Low-energy collision-induced dissociation (CID) on [Cu(II)(terpy)(M)](2+) complexes, formed via electrospray ionisation, produced the radical cations in sufficient yield to examine their unimolecular chemistry via an additional stage of CID. The CID spectrum of the radical cation of histidine is dominated by loss of water with the next most abundant ion arising from the combined loss of H(2)O and CO. In contrast, the CID spectra of the radical cations of 2-oxo-histidine and 2-thioxo-histidine are dominated by the combined loss of CO(2) and NH=CH(2). The observed differences are rationalised via DFT calculations which reveal that the barrier associated with loss of CO(2) from the histidine radical cation is higher than that for loss of H(2)O. In contrast, the introduction of an oxygen or sulfur atom into the side chain of histidine results in a reversal of the order of these barrier heights, thus making CO(2) loss the preferred pathway.     

Associative charge transfer reactions. Temperature effects and mechanism of the gas-phase polymerization of propene initiated by a benzene radical cation

In associative charge transfer (ACT) reactions, a core ion activates ligand molecules by partial charge transfer. The activated ligand polymerizes, and the product oligomer takes up the full charge from the core ion. In the present system, benzene(+*) (Bz(+*)) reacts with two propene (Pr) molecules to form a covalently bonded ion, C(6)H(6)(+*) + 2 C(3)H(6) --> C(6)H(12)(+*) + C(6)H(6). The ACT reaction is activated by a partial charge transfer from Bz(+*) to Pr in the complex, and driven to completion by the formation of a covalent bond in the polymerized product. An alternative channel forms a stable association product (Bz.Pr)(+*), with an ACT/association product ratio of 60:40% that is independent of pressure and temperature. In contrast to the Bz(+*)/propene system, ACT polymerization is not observed in the Bz(+*)/ethylene (Et) system since charge transfer in the Bz(+*)(Et) complex is inefficient to activate the reaction. The roles of charge transfer in these complexes are verified by ab initio calculations. The overall reaction of Bz(+*) with Pr follows second-order kinetics with a rate constant of k (304 K) = 2.1 x 10(-12) cm(3) s(-1) and a negative temperature coefficient of k = aT(-5.9) (or an activation energy of -3 kcal/mol). The kinetic behavior is similar to sterically hindered reactions and suggests a [Bz(+*) (Pr)]* activated complex that proceeds to products through a low-entropy transition state. The temperature dependence shows that ACT reactions can reach a unit collision efficiency below 100 K, suggesting that ACT can initiate polymerization in cold astrochemical environments.     

Phenol production in benzene/air plasmas at atmospheric pressure. Role of radical and ionic routes

Benzene can be efficiently converted into phenol when it is treated by either corona or dielectric barrier discharge (DBD) plasmas operating at atmospheric pressure in air or mixtures of N(2) and O(2). Phenol produced by corona discharge in an atmospheric pressure chemical ionization source (APCI) has been detected as the corresponding radical cation C(6)H(5)OH(+*) at m/z 94 by an ion trap mass spectrometer. On the other hand, phenol has been observed also as neutral product by gas chromatography-mass spectrometry analysis (GC-MS) after treatment in a DBD plasma. Experiments aimed at shading light on the elementary processes responsible for benzene oxidation were carried out (i) by changing the composition of the gas in the corona discharge source; (ii) by using isotopically labeled reagents; and (iii) by investigating some relevant ion-molecule reactions (i.e. C(6)H(6)(+*) + O(2), C(6)H(5)(+) + O(2)) via selected guided ion beam measurements and with the help of ab initio calculations. The results of our approach show that ionic mechanisms do not play a significant role in phenol production, which can be better explained by radical reactions resulting in oxygen addition to the benzene ring followed by 1,2 H transfer.     

Radiolysis of astrophysical ice analogs by energetic ions: the effect of projectile mass and ice temperature

An experimental study of the interaction of highly charged, energetic ions (52 MeV (58)Ni(13+) and 15.7 MeV (16)O(5+)) with mixed H(2)O : C(18)O(2) astrophysical ice analogs at two different temperatures is presented. This analysis aims to simulate the chemical and the physicochemical interactions induced by cosmic rays inside dense, cold astrophysical environments, such as molecular clouds or protostellar clouds as well at the surface of outer solar system bodies. The measurements were performed at the heavy ion accelerator GANIL (Grand Accelerateur National d'Ions Lourds) in Caen, France. The gas samples were deposited onto a CsI substrate at 13 K and 80 K. In situ analysis was performed by a Fourier transform infrared (FTIR) spectrometer at different fluences. Radiolysis yields of the produced species were quantified. The dissociation cross section at 13 K of both H(2)O and CO(2) is about 3-4 times smaller when O ions are employed. The ice temperature seems to affect differently each species when the same projectile was employed. The formation cross section at 13 K of molecules such as C(18)O, CO (with oxygen from water), and H(2)O(2) increases when Ni ions are employed. The formation of organic compounds seems to be enhanced by the oxygen projectiles and at lower temperatures. In addition, because the organic production at 13 K is at least 4 times higher than the value at 80 K, we also expect that interstellar ices are more organic-rich than the surfaces of outer solar system bodies.     

Derivatization of protonated peptides via gas phase ion—molecule reactions with acetone

The protonated [M + H]+ ions of glycine, simple glycine containing peptides, and other simple di- and tripeptides react with acetone in the gas phase to yield [M + H + (CH3)2CO]+ adduct ion, some of which fragment via water loss to give [M + H + (CH3)2CO - H2O]+ Schiff's base adducts. Formation of the [M + H + (CH3)2CO]+ adduct ions is dependent on the difference in proton affinities between the peptide M and acetone, while formation of the [M + H + (CH3)2CO - H2O]+ Schiff's base adducts is dependent on the ability of the peptide to act as an intramolecular proton "shuttle." The structure and mechanisms for the formation of these Schiff's base adducts have been examined via the use of collision-induced dissociation tandem mass spectrometry (CID MS/MS), isotopic labeling [using (CD3)2CO] and by comparison with the reactions of Schiff's base adducts formed in solution. CID MS/MS of these adducts yield primarily N-terminally directed a- and b-type "sequence" ions. Potential structures of the b1 ion, not usually observed in the product ion spectra of protonated peptide ions, were examined using ab initio calculations. A cyclic 5 membered pyrrolinone, formed by a neighboring group participation reaction from an enamine precursor, was predicted to be the primary product.     

Reaction of phenyl radical with propylene as a possible source of indene and other polycyclic aromatic hydrocarbons: an ab initio/RRKM-ME study

Ab initio G3(MP2,CC)//B3LYP/6-311G** calculations have been performed to investigate the potential energy surface (PES) and mechanism of the reaction of phenyl radical with propylene followed by kinetic RRKM-ME calculations of rate constants and product branching ratios at various temperatures and pressures. The reaction can proceed either by direct hydrogen abstraction producing benzene and three C(3)H(5) radicals [1-propenyl (CH(3)CHCH), 2-propenyl (CH(3)CCH(2)), and allyl (CH(2)CHCH(2))] or by addition of phenyl to the CH or CH(2) units of propylene followed by rearrangements on the C(9)H(11) PES producing nine different products after H or CH(3) losses. The H abstraction channels are found to be kinetically preferable at temperatures relevant to combustion and to contribute 55-75% to the total product yield in the 1000-2000 K temperature range, with the allyl radical being the major product (~45%). The relative contributions of phenyl addition channels are calculated to be ~35% at 1000 K, decreasing to ~15% at 2000 K, with styrene + CH(3) and 3-phenylpropene + H being the major products. Collisional stabilization of C(6)H(5) + C(3)H(6) addition complexes is computed to be significant only at temperatures up to 1000-1200 K, depending on the pressure, and maximizes at low temperatures of 300-700 K reaching up to 90% of the total product yield. At T > 1200 K collisional stabilization becomes negligible, whereas the dissociation products, styrene plus methyl and 3-phenylpropene + H, account for up to 45% of the total product yield. The production of bicyclic aromatic species including indane C(9)H(10) is found to be negligible at all studied conditions indicating that the phenyl addition to propylene cannot be a source of polycyclic aromatic hydrocarbons (PAH) on the C(9)H(11) PES. Alternatively, the formation of a PAH molecule, indene C(9)H(8), can be accomplished through secondary reactions after activation of a major product of the C(6)H(5) + C(3)H(6) addition reaction, 3-phenylpropene, by direct hydrogen abstraction by small radicals, such as H, OH, CH(3), etc. It is shown that at typical combustion temperatures 77-90% of C(9)H(9) radicals formed by H-abstraction from 3-phenylpropene undergo a closure of a cyclopentene ring via low barriers and then lose a hydrogen atom producing indene. This results in 7.0-14.5% yield of indene relative to the initial C(6)H(5) + C(3)H(6) reactants within the 1000-2000 K temperature range.     

First principle and ReaxFF molecular dynamics investigations of formaldehyde dissociation on Fe(100) surface

Detailed formaldehyde adsorption and dissociation reactions on Fe(100) surface were studied using first principle calculations and molecular dynamics (MD) simulations, and results were compared with available experimental data. The study includes formaldehyde, formyl radical (HCO), and CO adsorption and dissociation energy calculations on the surface, adsorbate vibrational frequency calculations, density of states analysis of clean and adsorbed surfaces, complete potential energy diagram construction from formaldehyde to atomic carbon (C), hydrogen (H), and oxygen (O), simulation of formaldehyde adsorption and dissociation reaction on the surface using reactive force field, ReaxFF MD, and reaction rate calculations of adsorbates using transition state theory (TST). Formaldehyde and HCO were adsorbed most strongly at the hollow (fourfold) site. Adsorption energies ranged from ?22.9 to ?33.9 kcal/mol for formaldehyde, and from ?44.3 to ?66.3 kcal/mol for HCO, depending on adsorption sites and molecular direction. The dissociation energies were investigated for the dissociation paths: formaldehyde → HCO + H, HCO → H + CO, and CO → C + O, and the calculated energies were 11.0, 4.1, and 26.3 kcal/mol, respectively. ReaxFF MD simulation results were compared with experimental surface analysis using high resolution electron energy loss spectrometry (HREELS) and TST based reaction rates. ReaxFF simulation showed less reactivity than HREELS observation at 310 and 523 K. ReaxFF simulation showed more reactivity than the TST based rate for formaldehyde dissociation and less reactivity than TST based rate for HCO dissociation at 523 K. TST‐based rates are consistent with HREELS observation. © 2013 Wiley Periodicals, Inc.