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1.
Cleavage of disulfide bonds is a common method used in linking peptides to proteins in biochemical reactions. The structures, internal rotor potentials, bond energies, and thermochemical properties (ΔfH°, S°, and Cp(T)) of the S–S bridge molecules CH3SSOH and CH3SS(=O)H and the radicals CH3SS?=O and C?H2SSOH that correspond to H‐atom loss are determined by computational chemistry. Structure and thermochemical parameters (S° and Cp(T)) are determined using density functional Becke, three‐parameter, Lee–Yang–Parr (B3LYP)/6‐31++G (d, p), B3LYP/6‐311++G (3df, 2p). The enthalpies of formation for stable species are calculated using the total energies at B3LYP/6‐31++G (d, p), B3LYP/6‐311++G (3df, 2p), and the higher level composite CBS–QB3 levels with work reactions that are close to isodesmic in most cases. The enthalpies of formation for CH3SSOH, CH3SS(=O)H are ?38.3 and ?16.6 kcal mol?1, respectively, where the difference is in enthalpy RSO–H versus RS(=O)–H bonding. The C–H bond energy of CH3SSOH is 99.2 kcal mol?1, and the O–H bond energy is weaker at 76.9 kcal mol?1. Cleavage of the weak O–H bond in CH3SSOH results in an electron rearrangement upon loss of the CH3SSO–H hydrogen atom; the radical rearranges to form the more stable CH3SS· = O radical structure. Cleavage of the C–H bond in CH3SS(=O)H results in an unstable [CH2SS(=O)H]* intermediate, which decomposes exothermically to lower energy CH2 = S + HSO. The CH3SS(=O)–H bond energy is quite weak at 54.8 kcal mol?1 with the H–C bond estimated at between 91 and 98 kcal mol?1. Disulfide bond energies for CH3S–SOH and CH3S–S(=O)H are low: 67.1 and 39.2 kcal mol?1. Copyright © 2011 John Wiley & Sons, Ltd.  相似文献   

2.
Samples of CH3CH2D, CH3CHD2, CD3CH2D, and CD3CHD2 have been prepared, and their infrared spectra recorded. Analysis of type B or type C “perpendicular” bands has enabled the rotational parameter (A0 - B0) to be determined for all four species. These have been combined with existing infrared, Raman, and microwave data for CH3CH3, CD3CD3, and CH3CD3 species, to determine the ground state (r0) and ground state average (rz) structures within narrow limits. Zero point energy effects on the average structure are determined to be a CH bond shortening of 0.0015(3) Å and an HCC angle opening of 0.010(5)° on deuteration. These effects enable the equilibrium structure of ethane to be estimated. The rz(CC) bond length is determined to be 1.5351(2) Å, which is significantly longer than previous estimates involving electron diffraction data.  相似文献   

3.
The microwave spectrum of normal trans-ethylamine CH3CH2NH2 and that of the -NHD and -ND2 species were measured and assigned. The obtained rotational constants for the ground state of the normal species are (in MHz): A = 31 758.33 ± 0.08, B = 8749.157 ± 0.025, and C = 7798.905 ± 0.025. The fitted dipole moment components are (in Debye): |μ|a = 1.057 ± 0.006, |μb| = 0.764 ± 0.009, and |μt| = 1.304 ± 0.011. The quadrupole coupling constants were fitted as (in MHz): χ+ = 1.62 ± 0.035 and χ? = ?1.89 ± 0.08. Analysis of the HFS of the deuterated species -ND2 allowed the experimental determination of the principal quadrupole tensor values (in MHz): χzz = ?4.68 ± 0.20, χyy = 1.75 ± 0.06, and χxx = 2.93 ± 0.20. The angle between the CN bond and the direction of the χzz quadrupole tensor component was fitted as 108.9° ± 0.6° and agreed with the expected general direction of the lone electron pair.  相似文献   

4.
A detailed rotational analysis of the microwave spectrum between 26.5 and 40 GHz of phosphaethene, CH2PH, has been carried out. This molecule is the simplest member of a new class of unstable molecules—the phosphaalkenes. The species can be produced by pyrolysis of (CH3)2PH, CH3PH2 and also somewhat more efficiently from Si(CH3)3CH2PH2. Full first-order centrifugal distortion analyses have been carried out for both 12CH231PH and 12CH231PD yielding: A0 = 138 503.20(21), B0 = 16 418.105(26), and C0 = 14 649.084(28) MHz for 12CH231PH. The 101-000μA lines have also been detected for 13CH2PH, cis-CDHPH and trans-CHDPH. These data have enabled an accurate structure determination to be carried out which indicates: r(HcC) = 1.09 ± 0.015 A?, ∠(HcCP) = 124.4 ± 0.8°; r(HtC) = 1.09 ± 0.015 A?, ∠(HtCP) = 118.4 ± 1.2°; r(CP) = 1.673 ± 0.002 A?, ∠(HCH) = 117.2 ± 1.2°; r(PH) = 1.420 ± 0.006 A?, ∠(CPH) = 97.4 ± 0.4°. The dipole moment components have been determined as μA = 0.731 (2), μB = 0.470 (3), μ = 0.869 (3) D for CH2PH; μA = 0.710 (2), μB = 0.509 (10), μ = 0.874 (7) D for CH2PD.  相似文献   

5.
As part of a program to further document the chemistry of CN on transition metal surfaces we have studied the decomposition of dimethyltetrazine on Pt(111). Products of the decomposition of dimethyltetrazine are H2, N2, HCN, C2N2 and small amounts of CH3CN. Most of the methyl groups (>90%) are totally dehydrogenated leaving residual carbon on the surface. At low coverage the initial decomposition is CH bond cleavage. At higher coverage direct production of molecular N2 at ~30°C is observed as the initial decomposition mode. Pretreatment of the Pt with H2, shifts the high coverage decomposition to higher temperatures. Changes in the decomposition with coverage is explained as due to a change in bonding geometry. We suggest that at low coverage the molecular plane is parallel to the surface with the methyl groups in proximity to the surface, while at high coverage the molecule bonds on edge possibly through two adjacent nitrogens.  相似文献   

6.
Shock-tube HeXe-laser absorption data at ωL=2850.633 cm-1 for CH3COOCH3 at 757≤T, °K≤1344, NO2at 412≤T, °K≤1859, andCH3at 1283≤T, °K≤1562 are presented. Approximate models are used for the effective spectral absorption coefficient of vibration-rotation lines for analytical representations of the results around atmospheric pressures. For CH3COOCH3, an equivalent Voigt-profile for an isolated line was adopted in order to account for a dependence on total pressure of the laser absorption coefficient. Shock-tube emission data at λ=6.890 μ(Δλ=0.197μ) forCH3COOCH3at 814≤T, °K≤1651 and for CH3at 1377≤T, °K≤1562 in the v4-fundamental of the H-bond bending mode of the CH3-group are well described at atmospheric pressures by approximations of just-overlapping-line models for polyatomic molecules. The adopted models are useful for concentration-time history measurements of methyl acetate, nitrogen dioxide, and methyl radicals behind shock waves.  相似文献   

7.
The microwave spectrum of the reactive species sulfine (CH2SO) has been studied. Assignments of 86 transitions of the ground vibrational state normal isotopic species, with J up to 60, have allowed a thorough centrifugal distortion analysis. With planarity implied by the Ic-Ia-Ib value of 0.1333 amu A?2, spectral assignments of seven other isotopic modifications have resulted in the following substitution bond lengths and angles: CHsyn = 1.085 Å, CHanti = 1.077 Å, CS = 1.610 Å, SO = 1.469 Å, ?HCH = 121.86°, ?SCHsyn = 122.51°, ?SCHanti = 115.63°, and ?CSO = 122.51°. From Stark effect measurements of the normal and d2 species, the dipole moment has been determined to be 2.994 D, oriented 25.50° relative to the SO bond and 9.61° relative to the normal species “a” axis. At an initial pressure of 30 mTorr in a clean brass waveguide, the lifetime of sulfine at 25°C is ~30 min.  相似文献   

8.
Acetonitrile (CH3CN) coordination to a Pt(111) surface has been studied with electron energy loss vibrational spectroscopy (EELS), XPS, thermal desorption and work function measurements. We compare data for the surface states with known acetonitrile coordination complexes. For CH3CN adsorbed on Pt(111) at 100 K, the molecule is rehybridized and adsorbs with the CN bond parallel or slightly inclined to the surface plane in an η2(C, N) configuration. The ν(CN) frequency is 1615 cm?1 and the C ls and N ls binding energies are 284.6 eV and 397.2 eV respectively. By contrast, weakly adsorbed multilayer acetonitrile exhibits a ν(CN) vibrational frequency of 2270 cm?1, and C ls and N ls binding energies of 286.9 eV and 400.1 eV respectively. Both the EELS and XPS results are consistent with rehybridization of the CN triple bond to a double bond with both C and N atoms of the CN group attached to the surface. In addition to this majority η2(C, N) monolayer state, evidence is found for a second, more strongly bound minority molecular state in thermal desorption spectra. As a result of the low coverage of this state, EELS was unable to spectroscopically identify it and we tentatively assign it as an η4(C, N) species associated with accidental step sites. By contrast to the surface complexes, almost all of the known platinum-nitrile coordination complexes are end-bonded via the N lone-pair orbital. Several cases of side-on bonding are known, however, and we compare the results with the known complex Fe32-NCCH3)(CO)9. The difference in the coordinative properties of a Pt(111) surface versus a single Pt atom must be due to the increased ability of multi-atom arrays to back-donate electrons into the π1 system of acetonitrile. Previously published EELS and XPS results for monolayer acetonitrile on Ni(111) and polycrystalline films are almost identical to the present results on Pt(111). We believe that the monolayer of CH3CNNi(111) is also an η2(C, N) species, not an end-bonded species previously proposed by Friend, Muetterties and Gland.  相似文献   

9.
《Surface science》1986,175(3):445-464
The adsorption and reaction of acetonitrile (CH3CN) on clean and oxygen covered Ag(110) surfaces has been studied using temperature programmed reaction spectroscopy (TPRS), isotope exchange, chemical displacement reactions and high resolution electron energy loss spectroscopy (EELS). On the clean Ag(110) surface, CH3CN was reversibly adsorbed, desorbing with an activation energy of 10 kcal mol-1 at 166 K from a monolayer state and at 158 K from a multilayer state. Vibrational spectra of multilayer, monolayer and sub-monolayer CH3CN were in excellent agreement with that of gas phase CH3CN indicating that CH3CN is only weakly bonded to the clean Ag(110) surface. On the partially oxidized surface CH3CN reacts with atomic oxygen to form adsorbed CH2CN, OH and H2O in addition to forming another molecular adsorption state with a desorption peak at 240 K. This molecular state shows a CN stretching frequency of 1840 cm-1, which is indicative of substantial rehybridization of the CN bond and is associated with side-on coordination via the π system. The CH2CN species is stable up to 430 K, where C-H bond breaking and reformation begins, leading to the formation of CH3CN at 480 K and HCN at 510 K and leaving only carbon on the surface. In the presence of excess oxygen atoms C-H bond breaking and reformation is more facile leading to additional desorption peaks for CH3CN and H2O at 420 K. This destabilizing effect of O(a) on Ch2CN(a) is explained in terms of an anionic (CH2CN-1) species. Comparison of the vibrational spectra from CH2CN(a) and CD2CN(a) supports the following assignment for the modes of adsorbed CH2CN: ν(Ag-C) 215: δ(CCN) 545; ϱt(CH2) 695; ϱw(CH2) 850; ν(C-C) 960; ϱr(CH2) 1060; δ(CH2) 1375; ν(CN) 2075; and ν(CH2) 2940 cm-1. These results serve to further indicate the wide applicability of the acid-base reaction concept for reactions between gas phase Brönsted acids and adsorbed oxygen atoms on solver surfaces.  相似文献   

10.
The magnetic structures of the rare earth orthotitanites, RTiO3, R = Tb, Dy, Tm and Yb, have been solved using neutron powder diffraction techniques.Two different types of magnetic structure have been found. One has the titanium and rare earth moments antiparallel along the c axis. The other structure has the rare earth moments in the ab plane with both ferromagnetic and antiferromagnetic components. In TbTiO3, the terbium moment of (8.1 ± 0.4)μβ has ferromagnetic and antiferromagnetic components along the [100] and [010] directions, respectively, with the moments lying at an angle of (36 ± 3)° to the [100] direction. In DyTiO3, the dysprosium moment of (9.7 ± 0.7)μβ has ferromagnetic and antiferromagnetic components along the [010] and [100] directions, respectively, with the moments making an angle of (31 ± 5)° to the [010] direction. TmTiO3 has a thulium moment of (6.0 ± 0.4)μβ in a ferromagnetic array along the [001] direction. The average titanium moment in the orthotitanites is (0.7 ± 0.3)μβ in a direction antiparallel to the ferromagnetic component of the rare earth moment. The ytterbium moment in YbTiO3 is quenched. It is found to be (1.7 ± 0.2)μβ assuming a moment direction along [001]. The rare earth moment directions are found to be remarkably consistent in the series RMO3, M = Ti, Cr, Fe and Al.  相似文献   

11.
Oxidation of acetonitrile has been studied in a flow reactor in the absence and presence of nitric oxide. The experiments were conducted at atmospheric pressure in the temperature range 1150–1450 K, varying the excess air ratio from slightly fuel-lean to very lean. Oxidation of CH3CN was slow below 1300 K. Nitric oxide, hydrogen cyanide and nitrous oxide were detected as important products. A detailed chemical kinetic model for oxidation of acetonitrile was developed, based on a critical evaluation of data from literature. The rate coefficients for the reactions of CH3CN and CH2CN with O2 were calculated from ab initio theory. Modeling predictions were in satisfactory agreement with experiments. Calculations were sensitive to thermal dissociation of CH3CN and to the branching fraction for CH3CN + OH to CH2CN + H2O and HOCN + CH3, respectively. More work is desirable for these steps, as well as for reactions of CH2CN and HCCN.  相似文献   

12.
The rotational spectra of 1,3,5-heptatriyne, CH3(CC)3H and 1-cyano-2,4-pentadiyne, CH3(CC)2CN have been studied in detail between 26.5 and 40.0 GHz. The molecules have long linear chains of heavy atoms and show characteristic C3v symmetric top spectra consisting of groups of R-branch lines at regular intervals separated by approximately 2B0. Six isotopic modifications of CH3(CC)2CN have been detected in natural abundance allowing rs substitution structural data to be derived for this species. Long linear polyacetylenic chains are quite flexible and this dynamic property manifests itself in the appearance of extended sequences of complex vibrational satellites associated with the bending of the chain. The vibrational ground state spectra as well as several low frequency vibrational satellites have been analyzed yielding various vibration-rotation parameters. For CH3(CC)3H B0 = 778.2445 ± 0.0007 and for CH3(CC)2CN B0 = 778.040 ± 0.001 MHz.  相似文献   

13.
An extensive study of the microwave spectrum of cyanamide has been undertaken, the analysis being based in part on semirigidbender calculations by the methods of Bunker and Szalay. Inversion lines of NH2CN, K?1 = 2 aQ branches and a number of vibrational satellites of the J = 2?1 transition were observed. A two-vibrational-state Hamiltonian was used to fit simultaneously the 0+ and 0? microwave data and yielded rotational constants X, Y, Z, DJ, DJK, d1, HJK as well as the inversion splitting and the μyz-connecting matrix element. Vibrational satellite data of seven isotopic species and infrared frequencies of NH2CN were included in the semirigid bender calculations: The NCN spine is nonlinear by ca. 5° in the equilibrium structure of the molecule. Also, rNHA? = 0.9994 + 0.0144?2; <HNH/2 = 60.39° ? 0.1134?2; rNCA? = 1.3301 + 0.0327?2 (? is the inversion angle in rad); rCN = 1.1645 A? fixed. The inclusion of the NC bond flexing was necessary in order to reproduce the observed vibrational satellite patterns of NH2CN, NHDCN, and ND2CN. The barrier to inversion of the amino group is 510 ± 6 cm?1 with minima at ±45.0 ±0.2°. The inversion dipole moment is 0.91 ± 0.02 Debye.  相似文献   

14.
《Surface science》1993,281(3):L341-L346
The adsorption of ethylene oxide on Ni(110) was studied at 95 K and monolayer coverage by angle-resolved X-ray photoelectron spectroscopy. A slow radiation-induced decomposition at hv = 1486.7 eV to most likely methoxy was noted. The orientation of the adsorbed ethylene oxide was determined by measuring forward scattering enhancements in the O 1s intensity distribution. Peaks in polar (θ) as well as azimuthal (φ) scans occurred at four angular positions in 2π above the surface: (θ = 54°, φ = 36°, 144°, 216°, 324°). These positions were evaluated to yield the tilt angle of the molecule at 48°_relative to normal, and the COC bond angle of adsorbed C2H4O of about 57°. The molecule is tilted towards the [001] and [001&#x0304;] directions (two domains), with a mirror plane in the [001] azimuth.  相似文献   

15.
The microwave spectra of the normal and four monosubstituted 13C isotopic species of bicyclo[3.1.0]hex-2-ene have been observed and analyzed. For the normal species the rotational constants (in megahertz) are: Λ = 6306.121 ± 0.006, B = 4516.667 ± 0.004, C = 3208.823 ± 0.002. From the complete data set, a partial rs heavy-atom structure has been obtained as well as a complete effective structure. The rs distances are found to be C1C5 = 1.521 ± 0.001 Å, C1C2 = 1.494 ± 0.010 Å, C5C6 = 1.482 ± 0.006 Å, C1C6 = 1.522 ± 0.007 Å. The overall effective structure shows the five-membered ring to be only slightly nonplanar (by ca. 6°), and the three-membered ring to be rather sharply inclined with respect to the five-membered ring (dihedral angle C1C5C6-C1C5C4 = 113.5°). Dipole moment measurements for the symmetryless molecule yielded values of |μa| = 0.166 ± 0.009, |μb| = 0.209 ± 0.015, |μc| = 0.119 ± 0.001, |μT| = 0.292 ± 0.012 D.  相似文献   

16.
The new molecule P-cyanophosphaethene, produced by the pyrolysis of chlorocyanotrimethyl-silylmethylphosphane, Me3SiCH2P(CN)Cl, was detected by microwave spectroscopy. Analysis of the microwave spectrum gave rotational constants A0 = 20 127.0 (16), B0 = 4067.758 (11), C0 = 3377.722 (11) MHz. Use of these values and an assumed geometry for the rest of the molecule provided estimates of 101.4(6)° for the (CPC) bond angle and 1.788(7) Å for the (PC) single bond length.  相似文献   

17.
Inner shell excitation spectra of tetramethylsilane, (CH3)4Si, have been measured in the silicon 2s, 2p (LI,II,III-shell) and carbon is (K-shell) regions using electron energy-loss spectroscopy at an impact energy of 2.5 keV and a scattering angle of ~1°. The high-resolution valence shell spectrum has also been observed at an impact energy of 3 keV and a zero degree scattering angle. The silicon 2p spectra are compared and contrasted with published photoabsorption spectra of SiF4, SiH4, and other related Si-containing molecules with varying ligands.  相似文献   

18.
The microwave spectrum of methyltrichlorogermane has been investigated in the region 26.5 to 40.0 GHz. The ground state rotational constants, B, were found to be 1602.19, 1601.42, 1601.10, 1600.71, 1600.02, 1537.84, 1537.10, and 1536.36 MHz for the symmetric top molecules CH370Ge35Cl3, CH372Ge35Cl3, CH373Ge35Cl3, CH374Ge35Cl3, CH376Ge35Cl3, CH370Ge37Cl3, CH372Ge37Cl3, and CH374Ge37Cl3, respectively. For the asymmetric top molecules CH372Ge35Cl237Cl and CH374Ge35Cl237Cl the ground state rotational constants A, B, and C were found to be 1597.96, 1559.31, 1203 and 1597.17, 1558.59, 1207 MHz, respectively. From the rotational constants the rs values for the GeCl bond distance of 2.135 ± 0.006 Å and the CGeCl bond angle of 106.0 ± 0.7° were obtained. The centrifugal distortion constant for the CH3Ge35Cl3 species was calculated to be 0.35 ± 0.08 kHz. The Raman spectra of methyltrichlorogermane has been recorded in the gas phase and the methyl torsional overtone (Δν = 2) was observed. From the observed frequency shift the barrier to internal rotation has been calculated to be 1.45 kcal/mole.  相似文献   

19.
It is well-known that many covalently bonded atoms of group VI have specific positive regions of electrostatic potential (σ-holes) through which they can interact with Lewis bases. This interaction is called ‘chalcogen bond’ by analogy with halogen bond and hydrogen bond. In this study, ab initio calculations are performed to predict and characterise chalcogen···π interactions in XHS···HCCH and XHSe···HCCH complexes, where X = F, Cl, Br, CN, OH, OCH3, NH2, CH3. For the complexes studied here, XHS(Se) and HCCH are treated as a Lewis acid and a Lewis base, respectively. The CCSD(T)/aug-cc-pVTZ interaction energies of this type of σ-hole bonding range from ?1.18 to ?4.83 kcal/mol. The calculated interaction energies tend to increase in magnitude with increasing positive electrostatic potential on the extension of X–S(Se) bond. The stability of chalcogen···π complexes is attributed mainly to electrostatic and correlation effects. The nature of chalcogen···π interactions is unveiled by means of the atoms in molecules, natural bond orbital, and electron localisation function analyses.  相似文献   

20.
In this paper, we obtained a novel poly(vanillinato potassium) complex (PVP) as a single crystal and characterized by analytical and spectroscopic methods. A single crystal of the PVP was obtained from the acetone solution. X-ray structural data show that crystals contain polymeric K+ complex of vanillin. Each potassium ion in the polymeric structure is identical and seven-coordinate, bonded to two methoxy, two phenoxy and three aldehyde oxygen atoms from four vaniline molecules. Two aldehyde oxygen atoms are bridging between potassium ions. It crystallizes in the monoclinic system, space group P21/c, with lattice parameters a=9.6215(10) Å, b=17.4139(19) Å, c=9.6119(10) Å, β=100.457(2)° and Z=4. Thermal properties of the PVP were investigated by TGA, DTA and DSC methods. The electrochemical properties of the complex were studied in different solvents and at various scan rates. The luminescence properties of the complex in different solvents and at different pH values have been investigated. The results show that the complex exhibits more efficient luminescence property in CH3CN and n-butanol.  相似文献   

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