Thermodynamic analysis of strain in heteroatom derivatives of indene

Thermochemical properties of indene, 2,3-benzofuran, indole, and N-methylindole have been studied to obtain a better quantitative understanding of the energetics associated with these compounds containing five-membered ring units. We used combustion calorimetry, transpiration, and high-level first-principles calculations to derive gaseous enthalpies of formation of the five-membered heterocyclic compounds. Our new values together with selected values for the parent heterocyclic compounds, available from the literature were used for calculation of the strain enthalpies H(S) of five-membered C, N, and O-containing cycles. The quantitative analysis of the resulting stabilization or destabilization of a molecule due to interaction of the benzene ring with the heteroatom has been performed.     

The direction of the dipole moments of furan,thiophen, and pyrrole: A controversial question

The report that the dipole moment in the five-membered heterocyclic rings, furan, thiophene, and pyrrole has the positive pole on the heteroatom is contradicted with arguments based on reactivity data, theoretical calculations and moment values of substituted derivatives. In actuality, the dipole moment in furan and thiophene is directed from the ring (positive pole) to the heteroatom (negative pole).     

Ruthenium(II)-catalyzed synthesis of 2-arylbenzimidazole and 2-arylbenzothiazole in water

Transition Metal Chemistry - Benzimidazoles/benzothiazoles are heterocyclic compounds which contain a five membered heteroatom and a benzene ring. They constitute a crucial structural unit of...     

The explicit interactions of five-membered saturated heterocyclics containing one and two heteroatoms with single water molecule

In this article, the hydrogen bonding interaction between saturated five-membered heterocyclic molecules and water has been investigated. Molecular orbital and density functional theory methods have been used to evaluate the stabilization energies associated with the adduct formation between heterocyclic molecules and water. The hydrogen bond acceptor ability of O, S, Se, and N as members of five-membered ring has been analyzed. The effect of the presence of second heteroatom N in the ring on the hydrogen bond interaction has also been evaluated. Atoms in molecules theory calculations were carried out to characterize the hydrogen bond through the changes in electron density and Laplacian of electron density. A natural energy decomposition analysis and natural bond orbital analysis is also performed to understand the nature of hydrogen bonding interaction in monohydrated five-membered heterocyclic adducts.     

Constructive Quantum Interference in Single-Molecule Benzodichalcogenophene Junctions

Heteroatom substitution into the cores of alternant, aromatic hydrocarbons containing only even-membered rings is attracting increasing interest as a method of tuning their electrical conductance. Here, the effect of heteroatom substitution into molecular cores of non-alternant hydrocarbons, containing odd-membered rings, is examined. Benzodichalcogenophene (BDC) compounds are rigid, planar π-conjugated structures, with molecular cores containing five-membered rings fused to a six-membered aryl ring. To probe the sensitivity or resilience of constructive quantum interference (CQI) in these non-bipartite molecular cores, two C₂-symmetric molecules (I and II) and one asymmetric molecule (III) were investigated. I (II) contains S (O) heteroatoms in each of the five-membered rings, while III contains an S in one five-membered ring and an O in the other. Differences in their conductances arise primarily from the longer S−C and shorter O−C bond lengths compared with the C−C bond and the associated changes in their resonance integrals. Although the conductance of III is significantly lower than the conductances of the others, CQI was found to be resilient and persist in all molecules.     

Applications of benzotriazole methodology in heterocycle ring synthesis and substituent introduction and modification

Applications of benzotriazole methodology for the preparation of heterocyclic compounds are reviewed. The characteristic advantages of benzotriazole as a synthetic auxiliary are first briefly considered. This is followed by a summary of its use in ring synthesis in which the construction of small; five-membered; six-membered; and larger heterocyclic rings using benzotriazole methodology are each examined separately. Finally, consideration of the use of benzotriazole in the ring annulation - particularly benzannulation - of heterocycles. Subsequent sections deal with the introduction of substituents into aromatic heterocycles; the ring substitution of saturated heterocycles; and benzotriazole assisted modification of heterocyclic substituents. The present review supplements a recent comprehensive review of benzotriazole chemistry [1] which covers the literature through 1996.     

Hétérocyclisation de la nor-3 ar-himachalone-9

We report the facile formation of several different three- and five-membered rings fused to the seven-membered ring of 3-nor-arylhimachal-9-one. We also report the formation of several six-membered rings fused to the seven-membered ring of 3-nor-arylhimachal-9-one. However, in these latter instances, the cyclizations were more difficult to accomplish. In fact the yields were generally low. Similar cyclizations to produce heterocyclic seven-membered rings fused to the seven-membered ring of 3-nor-arylhimachal-9-one have not been accomplished.     

Studies on the synthesis of heterocyclic compounds. VII. Action of acyl halides on heterocyclic compounds containing the O-M-O (M  P,As, Sb) bond in the ring

The action of acyl halides on heterocyclic compounds of five-membered rings containing an O-M-O (M ? P, As, Sb) linkage is described. The reactions were either carried out in the presence of a solvent (benzene or toluene) or by direct heating of the reagent with the substrate. In the case of arsole, stibole and stannole derivatives, the cleavage of O-M bond and the formation of the respective mono- and diesters were always obtained, while with the phospholes, no cleavage of the compounds was observed. The products IIa-c (M = Sb) have been obtained in excellent yields starting from VIa-c and antimony trichloride. The structure of the compounds which were prepared was determined by analytical and spectroscopic methods and also by comparations with authentic samples where possible.     

Collision-energy-resolved Penning ionization electron spectroscopy of thiazole and benzothiazole: study of ionic states and anisotropic interactions between a metastable He(23S) atom and hetero cyclic compounds

Anisotropic interactions between a metastable He(2(3)S) atom and aromatic heterocyclic compounds (thiazole and benzothiazole) as well as their electronic structures were studied by means of collision-energy/electron-energy resolved two-dimensional Penning ionization electron spectroscopy combined with ab initio molecular orbital calculations. Different collision-energy dependence of partial ionization cross sections (CEDPICS) were clearly observed for different ionic states depending on anisotropic extents of molecular orbitals from which an electron is removed. It was found that thiazole and benzothiazole most strongly attract a He(2(3)S) atom around the region where the nitrogen lone pair orbital extends. For another heteroatom, sulfur, it is relatively weak, but a certain attractive interaction was found for the directions perpendicular to the molecular plane. Benzothiazole was shown to widely attract a He(2(3)S) atom in the out-of-plane directions, since the benzene moiety showed a deeper potential well than the five-membered ring. Assignments of the ionic states including shake-up states were also discussed from observed CEDPICS and ab initio molecular orbital calculations. In particular, for the satellite bands, a negative collision energy dependence of the band intensity was well supported by a configuration-interaction calculation that assigns the satellite bands to be the ionization from pi orbitals accompanying pi-pi or n-pi excitations.     

Thermodynamic characteristics of sorption of heterocyclic compounds m capillary gas chromatography

Dependences of sorption energies of sulfur-, oxygen-, and nitrogen-containing heterocyclic compounds on the nature of heteroatoms, structure of substituents and their position in the ring were studied. The contributions of heteroatoms, functional and alkyl groups to the energy of dispersive interaction of position isomers with nonpolar stationary phases were determined for imidazoles, piperidines, morpholines, thiomorpholines, dioxalanes, oxathiolanes, dithiolanes, thiophenes, and furans. The nonequivalence of contributions of the same substituents to the sorption energy of each of the heterocyclic compounds, depending on the nature of the heteroatom and position of the substituent, was shown. The obtained values of contributions of heteroatoms and substituents can be used for apriori calculation of retention indices of position isomers of five- and six-membered heterocycles containing one or two heteroatoms in the ring.Translated from lzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 8, pp. 2033–2038, August, 1996.     

The characterisation of coumarins from selected structural classes by electrospray ionisation quadrupole time-of-flight tandem mass spectrometry

Electrospray ionisation quadrupole time-of-flight tandem mass spectrometry (ESI-QTOF-MS/MS) has been used for characterisation of a selection of naturally occurring and synthetic coumarins from different structural classes. The product ions, suggested in earlier studies by electrospray ionisation ion trap mass spectrometry (ESI-MS(n)), are unequivocally established for the representative coumarins by virtue of accurate mass measurement. Synthetic coumarins that are unsubstituted in the heterocyclic ring give rise to a major product ion by loss of CO(2), whereas those substituted in the heterocyclic ring generally undergo alternative fragmentation releasing neutral species such as ketene or methyl ketene. Naturally occurring coumarins, unsubstituted in the heterocyclic ring and substituted in the benzene ring with chains or rings of hydrocarbons and oxygen, principally fragment at the side chain releasing unsaturated hydrocarbons. The ESI-QTOF-MS/MS behaviour of some naturally occurring and synthetic quinolines which are structurally similar or fragment similarly are included where appropriate.     

Recent developments in the theoretical design of low-gap polymers and their nonlinear optical properties

Geometry optimizations on molecular clusters of the five-membered heterocyclic molecules pyrrole, furane, thiophene, and selenophene were carefully carried out. It is shown that the value of the band gap cannot be related to the bond alternation in the aromatic compounds. However, a correlation of the gap value with the ionization potential of the heteroatom in the ring is found and can be explained by the different stabilizations of the LUMO energy of the heterocycle with respect to the butadiene backbone. The energy band structure including also corrections for the electron correlation effects is reported. The newly developed variational method for the calculation of static polarizabilities of polymers is reviewed and applications to cyclopropene and heteroaromatic derivatives are reported. Finally, a possible approach to treat dynamical polarizabilities of polymers based on perturbation theory is briefly outlined. © 1994 John Wiley & Sons, Inc.     

Heterocyclic analogues of cyclohexene: theoretical studies of the molecular structures and ring-inversion processes

The equilibrium geometry, ring-inversion barrier, and pathway for heterocyclic analogues of cyclohexene have been studied using the MP2/6-311G(d,p) level of theory. It is concluded that the replacement of one methylene group in cyclohexene by heteroatom results in significant changes in the character of the potential-energy surface in comparison with cyclohexene. The equilibrium conformation of ring strongly depends on the position of the heteroatom due to the existence of the n-pi conjugation. However, the character of the ring-inversion process is determined by the nature of the heteroatom. In the case of sulfur- and selenium-containing rings, the boat or twist-boat conformation corresponds to an additional minimum on the potential-energy surface. Moreover, the barriers of the conformational transition from this conformer to two different half-chair forms are significantly different. Nitrogen-containing heterocycles possess two pairs of minima corresponding to the different configurations of the nitrogen atom. However, the transition between the two minima with the same configuration of the heteroatom proceeds only in two steps that include ring inversion and nitrogen inversion.     

Factors governing intrinsic chemical reactivity differences between clavulanic and penicillanic acids

To help elucidate why penicillin-G is inactivated by certain bacterial beta-lactamase enzymes, whereas clavulanic acid (Clav, which is similar to penicillin-G except at positions 1, 2, and 6) inhibits beta-lactamase, the intrinsic chemical reactivities of these two antibiotics were assessed in this work. Ab initio and continuum dielectric methods were used to map out the gas-phase and solution-phase free-energy profiles for the alkaline hydrolyses of Clav and penicillanic acid (Peni, which is similar to penicillin-G except at position 6) as well as of a fictitious hybrid compound, Peni-db, which is similar to Clav and Peni except at positions 1 and 2, respectively. Furthermore, the ring strain energies of various lactam rings and the five-membered rings of Peni and Clav as well as their respective rate-limiting transition states were computed to assess the contribution of four- and five-membered ring strains to the antibiotic's activity. The predicted product distribution, rate-limiting step, and relative reaction rates for the alkaline hydrolysis of Peni and Clav are in accord with the experimental findings. The rate-limiting step in the alkaline hydrolysis of Peni, Clav, or Peni-db is the approach of the negatively charged hydroxide ion toward the anionic reactant to form a tetrahedral intermediate. The alkaline hydrolysis of Clav generates more stable products than that of Peni mainly because the O1 atom and the hydroxyethylidene group in Clav facilitate the opening of the five-membered ring; furthermore, the O1 atom can abstract a proton easier than the less polar S1 in Peni. Clav undergoes basic hydrolysis faster than Peni mainly because its hydroxyethylidene group leads to an increase in the positive charge on the carbonyl C7 atom, therefore enhancing favorable electrostatic interactions with the incoming hydroxide anion. To a lesser extent, the oxygen at position 1 in Clav also contributes to the rate acceleration because of the greater solvent stabilization of the oxygen-containing transition state as compared to the respective ground state. The inherent strain of the four-membered beta-lactam ring or five-membered ring does not enhance the alkaline hydrolyses of beta-lactam molecules such as Peni or Clav, consistent with the observation that the rate-limiting step does not involve a breakdown of the four-membered beta-lactam ring or five-membered thiazolidine/oxazolidine rings.     

Synthesis of Quinolinyl-Substituted Five-Membered Heterocycles and Schiff Bases from 2-(4-Hydroxy-2-methylquinolin-3-yl)acetohydrazide

Russian Journal of Organic Chemistry - Quinolinyl-substituted five-membered heterocyclic compounds containing 1,3,4-oxadiazole, 1,3-dioxoisoindole, 1,2,4-triazole, and 1,3,4-thiadiazole rings and...     

First Approach to Nitrogen‐Containing Fused Aromatic Hydrocarbons as Targets for Organoelectronics Utilizing a New Transformation of O‐Protected Diaryl Methanols

A new concise approach for the construction of heteroatom analogues of polycyclic aromatic benzo[g]quinoline, benzo[b]carbazole, and pyrido[b]carbazole systems via diaryl methanols is described. This transformation involves formation of a central benzene ring fused to two aromatic 5‐ or 6‐membered rings of pyrrole and/or pyridine by using a combination of two aromatic aldehydes, of which at least one contains a ring nitrogen. Analysis of the UV and fluorescent properties, Stokes shifts, quantum yields in solution, and π‐stacking interactions in the crystal structures of the new materials was performed. These polycyclic aromatic compounds show potential as small‐molecule organoelectronic materials.     

Rearrangements of cyclopropenes into five-membered aromatic heterocycles: mechanistic aspect

This review covers rearrangements of cyclopropenes into aromatic five-membered heterocyclic compounds, namely furans and pyrroles; accompanied by small ring cleavage proceeding in the presence of catalytic amounts of transition metals, Lewis acids, or under UV irradiation.     

Conformational Flexibility of Benzannelated Derivatives of Six-Membered 1,2- and 1,4-Dihydroaromatic Rings Containing No Saturated Carbon Atoms

The effect of benzannelation on the conformational flexibility of the six-membered 1,2- and 1,4-dihydroaromatic rings containing no saturated carbon atoms is studied by the ab initio HF/6-31G(d, p) method. It is shown that replacement of the C=C bond by the benzene ring leads to enhanced conformational flexibility of the ring due to weaker conjugation interactions involving the bridging carbonyl group or the heteroatom. The dihydro ring remains flexible even when included in the tetracene fragment. In all cases, the 1,2-dihydroaromatic rings are less rigid than their 1,4-dihydroanalogs.     

Ring contraction upon electron-impact as a function of ring size: The mass spectrometric fragmentation of acylated cyclic amines

The structural prerequisites of skeletal rearrangement by ring contraction, previously observed in N-acetylmorpholine, were explored by extending the study to N-acetylpyrrolidine, -piperidine and -hexamethyleneimine. Fragmentation via ring contraction was found to be absent in the five-membered ring, detectable in the six-membered ring, and significant in the seven-membered homologue. Ring contraction in these model compounds, i.e. in absence of oxygen as a second heteroatom in the cyclic moiety, is discussed in view of its implications and its support for an initially proposed radical-induced rearrangement mechanism.     

A relative approach for determining ring strain energies of heterobicyclic alkenes

Ring strain energies (RSEs) of heterocyclic compounds are predicted compared to their analogous homocyclic compounds using the G3 method. Suitable reference compounds are devised for row 2 and row 3 heterobicyclic alkenes. Any difference in energy between the ring and the reference is due to RSE. Row 3 heterobicyclic alkene RSEs are less than those of row 2. As the electronegativity of the heteroatom increases, the RSE increases. Substitutents at the bridgehead carbons cause a decrease in RSE. [3.2.1] Heterobicyclic alkenes are significantly less strained than their [2.2.1] counterparts. Relative and absolute RSEs are reported for heterobicyclic alkenes and their derivatives.