Reaction pathways of proton transfer in hydrogen-bonded phenol-carboxylate complexes explored by combined UV-vis and NMR spectroscopy

Combined low-temperature NMR/UV-vis spectroscopy (UVNMR), where optical and NMR spectra are measured in the NMR spectrometer under the same conditions, has been set up and applied to the study of H-bonded anions A··H··X(-) (AH = 1-(13)C-2-chloro-4-nitrophenol, X(-) = 15 carboxylic acid anions, 5 phenolates, Cl(-), Br(-), I(-), and BF(4)(-)). In this series, H is shifted from A to X, modeling the proton-transfer pathway. The (1)H and (13)C chemical shifts and the H/D isotope effects on the latter provide information about averaged H-bond geometries. At the same time, red shifts of the π-π* UV-vis absorption bands are observed which correlate with the averaged H-bond geometries. However, on the UV-vis time scale, different tautomeric states and solvent configurations are in slow exchange. The combined data sets indicate that the proton transfer starts with a H-bond compression and a displacement of the proton toward the H-bond center, involving single-well configurations A-H···X(-). In the strong H-bond regime, coexisting tautomers A··H···X(-) and A(-)···H··X are observed by UV. Their geometries and statistical weights change continuously when the basicity of X(-) is increased. Finally, again a series of single-well structures of the type A(-)···H-X is observed. Interestingly, the UV-vis absorption bands are broadened inhomogeneously because of a distribution of H-bond geometries arising from different solvent configurations.     

Characterization of dextrin hydrogels by FTIR spectroscopy and solid state NMR spectroscopy

Fourier transform infrared (FTIR) and ¹³C solid state nuclear magnetic resonance (NMR) spectroscopy were used to study dextrin structural changes occurring upon hydrogel formation by vinyl acrylate (VA) grafting and subsequent free radical polymerization. The degrees of VA substitution (DS) and polymerization (DP) were quantified up to 40%VA by FTIR intensity measurements and partial least squares (PLS)/FTIR, the latter being a faster and less error-prone method. Above 40%VA, both parameters are underestimated by FTIR. A spin counting NMR experiment showed high carbon observabilities for hydrogels and improved PLS/NMR models were achieved for DS and DP determination. Alternative NMR integration methods are hindered by the broad VA peaks and need for area correction, due to their CP dynamics. NMR changes in C1 profile showed that a single helical conformation predominates at lower %VA, being replaced by disordered conformations as %VA increases. Furthermore, a correlation FTIR/NMR study indicated that ring conformations are significantly affected in hydrogels, compared to unpolymerized dextrin.     

Characterization of protein-ligand interactions by high-resolution solid-state NMR spectroscopy

A novel approach for detection of ligand binding to a protein in solid samples is described. Hydrated precipitates of the anti-apoptotic protein Bcl-xL show well-resolved (13)C-(13)C 2D solid-state NMR spectra that allow site-specific assignment of resonances for many residues in uniformly (13)C-enriched samples. Binding of a small peptide or drug-like organic molecule leads to changes in the chemical shift of resonances from multiple residues in the protein that can be monitored to characterize binding. Differential chemical shifts can be used to distinguish between direct protein-ligand contacts and small conformational changes of the protein induced by ligand binding. The agreement with prior solution-state NMR results indicates that the binding pocket in solid and liquid samples is similar for this protein. Advantages of different labeling schemes involving selective (13)C enrichment of methyl groups of Ala, Val, Leu, and Ile (Cdelta1) for characterizing protein-ligand interactions are also discussed. It is demonstrated that high-resolution solid-state NMR spectroscopy on uniformly or extensively (13)C-enriched samples has the potential to screen proteins of moderate size ( approximately 20 kDa) for ligand binding as hydrated solids. The results presented here suggest the possibility of using solid-state NMR to study ligand binding in proteins not amenable to solution NMR.     

NMR measurement of self-diffusion coefficients by slice selection

Most of the time, so-called inversion-recovery experiments concern longitudinal nuclear magnetization of the whole sample, the region of interest being limited by the transmitting-receiving coil. Here we address the question of what occurs if the region of interest is purposely limited to a thin slice selected by means of procedures employing magnetic field gradients. Gradients of both magnetic fields (B(0), the static magnetic field, and B(1), the radio-frequency magnetic field) can be used. In this study we resorted essentially to B(1) gradients and novel procedures, based on the natural inhomogeneity of the B(1) field delivered by a saddle coil, are described. It is obvious that molecules leaving and entering the slice during the evolution (recovery) period should influence the magnetization recovery. Molecular self-diffusion is responsible for such effects, experimentally visible and accounted for by an appropriate theory which has been approximated for by permitting an easy physical assessment. This approach should lead to alternative methods for measuring self-diffusion coefficients.     

Characterization of folding intermediates of a domain-swapped protein by solid-state NMR spectroscopy

We have employed two-dimensional solid-state NMR to study structure and dynamics of insoluble folding states of the domain-swapped protein Crh. Starting from the protein precipitated at its pI, conformational changes due to a modest temperature increase were investigated at the level of individual residues and in real-time. As compared to the crystalline state, Crh pI-precipitates exhibited a higher degree of molecular mobility for several regions of the protein. A rigidly intact center was observed including a subset of residues of the hydrophobic core. Raising the temperature by 13 K to 282 K created a partially unfolded intermediate state that was converted into beta-sheet-rich aggregates that are mostly of spherical character according to electron microscopy. Residue-by-residue analysis indicated that two out of three alpha-helices in aggregated Crh underwent major structural rearrangements while the third helix was preserved. Residues in the hinge region exhibited major chemical-shift changes, indicating that the domain swap was not conserved in the aggregated form. Our study provides direct evidence that protein aggregates of a domain-swapped protein retain a significant fraction of native secondary structure and demonstrates that solid-state NMR can be used to directly monitor slow molecular folding events.     

NMR self-diffusion study of polyethylene and paraffin melts

The self-diffusion coefficient D of paraffin and polyethylene melts—covering the range between N = 19 and 10³ where N is the number of monomeric units—was measured by the pulsed-magnetic-field-gradient NMR method for diffusion times between 3 ms and 1 s. For the paraffins, D is proportional to N^?2 though the molecular weights are smaller than the critical molecular weight for entanglement. In polyethylene, melts a strong dependence of the diffusion coefficient on the diffusion time is observed, whereas no such dependence is found in paraffin melts. A mathematical formalism for describing spin-echo attenuation in terms of a velocity autocorrelation function is shown to yield qualitative agreement with the experimental results.     

Characterization of amorphous carbon films by 13C CP MAS NMR spectroscopy

¹³C CP MAS NMR spectroscopy was used to characterize α-C:H materials generated from methane and hydrogen mixtures using a microwave plasma. Dipolar dephasing experiments indicate a range of T_dd making quantification of quaternary “diamond”-like carbons difficult. Unconstrained lineshape analysis is not suitable for the deconvolution of the NMR spectra, but linewidth constrained analyses gave reasonable results. © 1993 John Wiley & Sons, Inc.     

Characterization of a tamoxifen-tethered single-walled carbon nanotube conjugate by using NMR spectroscopy

We report the synthesis and characterization of a tamoxifen-tethered single-walled carbon nanotube (SWCNT) conjugate, in which tamoxifen is covalently attached to the single-walled carbon nanotube via oxidation and esterification reactions for the first time. The functionalized SWCNT derivative was characterized by using spectroscopic techniques: IR, UV-vis, Raman, and (1)H NMR Spectroscopy. The attachment of the drug tamoxifen to SWCNTs is analogous to the gold conjugate, which provided an endocrine treatment for breast cancer.     

Characterization of the 310-helix in model peptides by HRMAS NMR spectroscopy

A tetra- and a hepta-homopeptide from the C(alpha)-tetrasubstituted Aib (alpha-aminoisobutyric acid) residue were covalently linked to the POEPOP resin by the fragment-condensation approach. The conformational preferences of the two model peptides were determined for the first time on a solid support by means of high-resolution magic angle spinning NMR spectroscopy. The results obtained indicate that the Aib homopeptides adopt a regular 3(10)-helical structure even when they are covalently bound to a polymeric matrix, and thus confirm the remarkable conformational stability of the peptides rich in this amino acid. An ATR-FTIR spectroscopic investigation, performed in parallel, also confirmed that these polymer-bound peptides do indeed adopt a helical conformation. The results of this study open the possibility to exploit the peptide-resin conjugates based on C(alpha)-tetrasubstituted alpha-amino acids as helpful, structurally organized templates in molecular recognition studies or as catalysts in asymmetric synthesis.     

Analysis of poly(amidoamine) dendrimer structure by UV-vis spectroscopy

We report a UV-vis spectroscopic study of four different types of poly(amidoamine) dendrimers. The results indicate that the degree of protonation of the interior tertiary amines of these dendrimers correlates directly to an absorption band with λ(max) in the range of 280-285 nm. Specifically, at low pH, the tertiary amines are protonated and the 280-285 nm band is absent. However, at elevated pH, when these groups are deprotonated, this band appears. Similar results were obtained for a simple model compound. The dependence of the 280-285 nm band on the chemical state of the tertiary amines of the dendrimers was confirmed by complexing them with Pd(2+) and Pt(2+). In this case the band disappears, and it only reappears when the metal ions are decomplexed following reduction with BH(4)(-). Finally, filtration experiments showed that the absorption band between 280-285 nm arises exclusively from intact, or nearly intact, dendrimers rather than low-molecular-weight fragments.     

Characterization and quantitation of clarithromycin polymorphs by powder X-ray diffractometry and solid-state NMR spectroscopy

Characterization of clarithromycin polymorph was performed by solid-state cross polarization and magic angle spinning (CP/MAS) 13C-NMR spectroscopy. Two polymorphs, form II and form I, of clarithromycins indicated characteristic resonances of C1 carbonyl carbon at 176.2 and 175.2 ppm, respectively. Since each peak of C1 carbon was well separated in the spectrum of the two polymorphs, we performed quantitative analysis of the polymorphic fraction from the peak area of these peaks. The peak area of form I was found to linearly increase with an increase of its content, with a correlation coefficient of above 0.99. Solid-state NMR was found to be a useful technique to determine the characteristics of the polymorphic forms.     

Characterization of porosity in organic and metal-organic macrocycles by hyperpolarized 129Xe NMR spectroscopy

Hyperpolarized (129)Xe NMR spectroscopy is used to establish the solid-state porosity of shape-persistent macrocycles with either an organic or metal-organic framework. These studies show that even upon removal of cocrystallized solvent molecules, the macrocycles maintain a porous or channeled structure. The technique can provide valuable information about systems for which X-ray crystallographic analysis is not feasible. [structure: see text]     

Characterization of organic substrates bound to cross-linked polystyrenes by 13C NMR spectroscopy

The ¹³C NMR spectra of a wide variety of organic substrates bound to 2% cross-linked polystyrenes may be obtained routinely, provided the resins can be sufficiently swollen. The ¹³C chemical shifts of polymer-bound trityl alcohol, polymer-bound monotrityl ethers of the symmertrical diols HO (CH₂)_nOH (n=2, 4, 6, 7, 9 and 10), and some related intermediates in the solid phase synthesis of insect pheromones are presented. ¹³C shift additivity correlations, differing little from those in free trityl ethers, are drawn.     

Characterization of PDMS model junctions and networks by solution and solid-state silicon-29 NMR spectroscopy

The application of ²⁹Si solution and solid-state cross-polarization/magic-angle spinning (CP/MAS) nuclear magnetic resonance (NMR) techniques to the study of structural features in polydimethylsiloxane (PDMS) model endlinked elastomeric networks is explored. The relationship between the topological (network) functionality of a structural moiety, which determines network mechanical properties, and its chemical (spectral) functionality, which is reported by the NMR, is discussed. The second-order spectral shifts corresponding to topographical functionality variation within a chemical functionality class are usually sufficiently well resolved in these networks to allow positive identification of a variety of structural features. The basic PDMS repeat unit, ? OSi(CH₃)₂? , is found to possess an axially symmetric chemical shift tensor with σ_∥ = ?56.8 ppm downfield from TMS, and σ_⊥ = ?4.4 ppm. This axial symmetry does not result from rapid reorientation about the chain axis. The NMR spectrum reveals defects in model endlinked networks. In the case of vinyl-endlinked systems, the defects are ascribed to the formation of elastically ineffective loops. Hydroxyl-endlinked systems contain either loops or else trifunctional junctions (hydrolyzed before chain coupling could take place) and dangling chain ends. The CP/MAS technique provides an order-of-magnitude reduction over standard solution techniques in the time to acquire a spectrum from a network not containing paramagnetic doping. ¹³C spectra of PDMS systems are not as informative as ²⁹Si spectra.     

石油沥青质的NMR测定及其模型分子推测

从6种不同原油中分离提取了正己烷不溶的沥青质，测定了沥青质的1H NMR(Nuclear Magnetic Resonance)和13C NMR谱，从不同类型氢和碳原子的质量分数计算得到了一系列平均结构参数，结合相对分子质量测定和元素分析，给出了沥青质基本结构单元的平均分子式，推测了模型分子的结构。结果表明，沥青质的基本结构单元可以用稠环芳烃连接环烷烃和烷基侧链并含氧、氮和硫等杂原子的单元表示，结构单元之间形成缔合体，缔合数为4～6。     

Study of concerted and sequential photochemical Wolff Rearrangement by femtosecond UV-vis and IR spectroscopy

Photoinduced Wolff rearrangements were studied by femtosecond time-resolved UV-vis and IR transient absorption spectroscopy. For BpCN2COCH3 in acetonitrile the IR data indicate the presence of at least two mechanisms of ketene formation. The first process is fast proceeding in either 1BpCN2COCH3*, or in a hot carbene, or in both species, while the second is slow proceeding through the intermediacy of a relaxed carbene. The slow time constant of the ketene formation dynamics obtained by ultrafast IR (700 ps) spectroscopy agrees with the relaxed carbene decay of 800 +/- 100 ps obtained by UV-vis absorption spectroscopy.     

Characterization of para‐substituted benzamidoximes and benzamidinium salts by 15N NMR spectroscopy

¹⁵N NMR data for a series of 12 para‐substituted benzamidoximes and benzamidinium salts were determined in dimethyl sulfoxide. For the amino group of benzamidoximes ¹J(N,H) coupling constants were determined using polarization transfer techniques; the other ¹⁵N atoms were not detectable owing to fast exchange processes and, thus, standard proton noise decoupled spectra had to be measured. The ¹⁵N NMR chemical shifts of the oxime‐type nitrogen atom and the benzamidinium amino group (with two exceptions) correlate with Hammett σ° values (r²>0.95). ¹⁵N NMR shift data are a suitable and sensitive means for characterizing far‐ranging electronic substituent effects in these functional groups. Additionally, ¹³C NMR data in dimethyl sulfoxide solution are given. All spectroscopic data will be used for investigations into the mechanisms of the enzymes involved in the metabolic cycle of oxidation and reduction of benzamidines and benzamidoximes. Copyright © 2002 John Wiley & Sons, Ltd.