Anab initio SCF molecular orbital study of acetylcholine

A standard ab initio (STO 3 G) study indicates, in distinction to theab initio molecular fragment results, that the preferred conformation of acetylcholin is gauche.     

Hydration of the carboxylate group: Anab initio molecular orbital study of acetate-water complexes

The hydration of the carboxylate group in the acetate anion has been investigated by performingab initio molecular orbital calculations on selected conformers of complexes with the form CH₃CO₂ ^– ·nH₂O·mH₂O, wheren andm denote the number of water molecules in the first and second hydration spheres around the carboxylate group, andn + m 7. The results of RHF/6–31G^* optimizations for all the complexes and MP2/6–31+G^** optimizations for several one-water complexes are reported. The primary consequence of hydration on the structure of the acetate anion is a decrease in the length of the C-C bond. Enthalpy and free energy changes calculated at the MP2/6–31+G^** and MP2/6–311+ +G^** levels are reported for the reactions CH₃CO₂ ^– + [H₂O] _P CH₃CO₂ ^– ·nH₂O ·mH₂O where [H₂O] _P is a water cluster containingp water molecules andp=n+m 7. The calculations show that conformers with the lowest enthalpy change on complex formation are often not those with the lowest free energy change, due to a greater entropic loss in complexes with tighter and more favorable enthalpic interactions. Hydrogen bonding of six water molecules directly to the carboxylate group in CH₃CO₂ ^– is found to account for approximately 40% of the enthalpy change and 37% of the free energy change associated with bulk solvation.     

Molecular structure of ethynylbenzene from electron diffraction and ab initio molecular orbital calculations

The molecular structure and benzene ring distortions of ethynylbenzene have been investigated by gas-phase electron diffraction and ab initio MO calculations at the HF/6-31G^* and 6-3G^** levels. Least-squares refinement of a model withC _2v, symmetry, with constraints from the MO calculations, yielded the following important bond distances and angles:r _g(C _i -C _o )=1.407±0.003 Å,r _g(C _o -C _m )=1.397±0.003 Å,r _g(C _m -C _p )=1.400±0.003 Å,r _g(Cr _i -CCH)=1.436 ±0.004 Å,r _g(C=C)=1.205±0.005 Å, C _o -C _i -C _o =119.8±0.4°. The deformation of the benzene ring of ethynylbenzene given by the MO calculations, including o-C_i-C_o=119.4°, is insensitive to the basis set used and agrees with that obtained by low-temperature X-ray crystallography for the phenylethynyl fragment, C₆H₅-CC-, in two different crystal environments. The partial substitution structure of ethynylbenzene from microwave spectroscopy is shown to be inaccurate in the ipso region of the benzene ring.     

Ab initio molecular orbital studies for compounds of magnesium

Using a 6-311G** basis set with estimation of correlation energy at the MP2 level, structural and energetic data for 40 molecular species containing magnesium have been calculated. For about half the species studied, further energetic data were obtained using Pople's G2 method. Enthalpy changes at 298.15 K were obtained for isogyric reactions and standard enthalpies of formation were derived from these. Comparison of the standard enthalpies of formation with the sparse literature data suggests the MP2/6-311G** standard enthalpies of formation are accurate to ± 15 kJ mol^?1 and the corresponding G2 enthalpies accurate to ± 10 kJ mol^?1. The calculated ΔH [MgN, g] revealed a gross error in the currently accepted value for this function. It is intended that these results will be used to parameterize the semiempirical molecular orbital package, MOPAC, for the element magnesium. © John Wiley & Sons, Inc.     

Ab initio molecular orbital study of the insertion of H2 into POSS compounds

The insertion of one and two H₂ molecules into polyhedral oligomeric silsesquioxanes (POSS) was investigated as a function of the size of the cage, using both Hartree-Fock (HF) and second order perturbation theory (MP2) methods. Also investigated was the same reaction into the heavier groups 4 and 14 metal-substituted POSS (metallasilsesquioxanes) such as Ge-POSS, Si/Ge-mixed POSS, and Ti- and Zr-POSS. The properties of these species in comparison with those of POSS are discussed.     

Ab initio molecular orbital study of 1-fluorosilatrane

The molecular geometry of 1-fluorosilatrane was optimized fully by restricted Hartree–Fock (HF) calculations using the 3-21G, 3-21G(d) and 6-31G(d) basis sets, with the aim of locating the positions of the local minima on the energy hypersurface. The optimized geometries were compared with available experimental (X-ray and ED) and semiempirical data. The ab initio calculations using polarized basis sets are in good agreement with those of previously reported semiempirical calculations, giving a slightly longer equilibrium Si? N distance (～ 256 pm) in the case of the endo minimum. However, the exo minimum predicted by the semiempirical methods is not supported. There was no experimental evidence for the existence of this exo minimum, and the present ab initio calculations suggest that it is highly unstable. There is considerable disagreement among the experimental results in the C? N and C? C bond lengths in various silatranes, their differences being as large as 13 pm. The present calculations predict that these differences may appear because the silatrane skeleton is flexible with low-energy, large-amplitude internal motions which introduce considerable uncertainties into the position of ring carbon atoms. © 1994 by John Wiley & Sons, Inc.     

Electronic states of NiFe. Anab initio HF-CI study

Ab initio Hartree-Fock and configuration interaction methods have been employed in describing the interaction between a Ni and an Fe atom. The chemical bond between the atoms is due to a 4sσ molecular orbital. The 3d orbitals merely cause small splittings between the potential energy curves. Equilibrium distance, dissociation energy and vibrational frequency are predicted for the ground state of the molecule.     

Ab initio molecular orbital calculations

A series of non-empirical calculations on furan, pyrrole and 1,2,5-oxadiazole are reported in which the effect of polarisation functions added to the minimal 7s 3p basis on each atom is studied. The effect on these planar molecules is largely through the rather than the-system. A comparison with the results of work with scaled functions is reported. Both series are shown to lead to much improved agreement with the electron spectroscopy energy levels. The effect on the dipole moments of these changes in basis is more variable but, with the exception of furan, the agreement with experiment is improved in the present method.

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Zusammenfassung Für die Moleküle Furan, Pyrrol und 1,2,5-Oxadiazol wurde eine Reihe von nichtempirischen Rechnungen durchgeführt, in denen der Einfluß von zusätzlichen Polarisationsfunktionen zur minimalen 7s 3p-Basis an jedem Atom untersucht wird. Die Ergebnisse werden mehr durch die Art der Beschreibung des Systems der-Elektronen als durch diejenige der-Elektronen beeinflußt. Ein Vergleich mit den Ergebnissen bei Verwendung skalierter Funktionen wird durchgeführt. Beide Reihen von Ergebnissen zeigen eine verbesserte Übereinstimmung zu den Energiemeßwerten der Elektronenspektroskopie. Die Änderungen des berechneten Dipolmoments bei derartigen Basisvariationen sind größer als bei früheren Methoden. Die Übereinstimmung mit dem Experiment wird, mit Ausnahme von Furan, jedoch verbessert.

     

Addition of anions to carbonyl compounds: an ab initio study

Energies for the addition of anionic nucleophiles, Z(-), to carbonyl compounds, XYCO, are calculated at the G2(MP2) level of theory. The substituents X, Y, and Z are taken from the set {H, CH3, NH2, OH, F, CF3, CHCH2, CHO, CCH, and CN}. The basicity and, to a lesser extent, ionization potential of Z(-) were found to correlate with the enthalpy of addition of Z(-) to H2CO. The enthalpy of addition of Z(-) to XYCO relative to H2CO is largely independent of Z. The ordering of the enthalpies of addition for the series of XYCO's is rationalized. By using a thermodynamic cycle, the independence of this ordering from Z is attributed to the additivity of the inductive stabilization of XYZCO(-) by X and Y versus H2ZCO(-). A method for estimating the enthalpy of addition for nucleophile/carbonyl combinations not studied above is described and shown to give good results on a model system.     

Selective isomerization of 1-alkenes by binary metal carbonyl compounds

An efficient and selective isomerization of 1-alkenes to their corresponding 2-alkenes is achieved by using binary metal carbonyls such as Ru₃(CO)₁₂ as catalysts. Possible mechanisms are discussed. Substituents on the 1-alkene have a significant effect on the isomerization.     

An ab initio molecular orbital study of the deprotonation of amines

The geometries of the amines NH₂X and amido anions NHX^?, where X = H, CH₃, NH₂, OH, F, C₂H, CHO, and CN have been optimized using ab initio molecular orbital calculations with a 4-31G basis set. The profiles to rotation about the N? X bonds in CH₃NH^?, NH₂NH^?, and HONH^? are very similar to those for the isoprotic and isoelectronic neutral compounds CH₃OH, NH₂OH, and HOOH. The amines with unsaturated bonds adjacent to the nitrogen atoms undergo considerable skeletal rearrangement on deprotonation such that most of the negative charge of the anion is on the substituent. The computed order of acidity for the amines NH₂X is X = CN > HCO > F ≈ C₂H > OH > NH₂ > CH₃ > H and for the reaction NHX^? + H⁺ → NH₂X the computed energies vary over the range 373–438 kcal/mol.     

An ab initio molecular orbital study of the protonation of amines

Ab initio molecular orbital calculations using an 8 ^s , 3 ^p ; 3 ^s Gaussian basis set, with contraction, have been used to study a series of primary amines XNH₂, where X = H, CH₃, OH, F, CN, CHO, and NO₂. The geometries of the corresponding ammonium ions have been optimised and the energy differences have been used to estimate relative proton affinities. The 1 ^s orbital energies for both the amines and ammonium ions, when corrected for the effects of charges on the other atoms in the molecule by use of an ESCA equation, give a good correlation with the computed charge on the nitrogen atom.     

Conformational analysis of allylamine. An ab initio molecular orbital study

The conformational characteristics of allylamine were investigated by the ab initio STO -3G basis set. The results indicate that the molecule exists in a number of stable conformations through rotations about the CC? NH and CC? CN bonds. The TE (trans-CCNLP , LP representing lone-pair electrons, and eclipsed-CCCH) is the most stable, while TC (trans-CCNLP and cis-CCCN), GE (gauche-CCNLP and eclipsed-CCCH), G′C(gauche′-CCNLP and cis-CCCN), and G′E (gauche′-CCNLP and eclipsed-CCCH) conformations are less stable, respectively, by 0.41, 0.67, 0.92, and 1.14 kcal mol^?1. These results are in general consistent with previous experimental results. Rationale for the conformational characteristics and order of stabilities are explored.     

Pentacoordination of boron, carbon, aluminum, and silicon atoms in organic compounds: Anab initio study

Pentacoordination of boron, carbon, aluminum, and silicon atoms in bicyclic organic compounds of the pentalene type was studied using theab initio RHF/6-31G^** and MP2(full)/6-31G^** methods. It was shown that the ability of the atom to form pentacoordinate structures increases on going from B to Al and from C to Si atom,i.e. as the number of the element of Groups IIIA and IVA of the periodic system increases. At the same time, the reverse tendencies are observed in the 2nd and 3rd periods of the periodic system,viz., the ability of the atom to form pentacoordinate structures increases on going from C to B and from Al to Si atom. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 7, pp. 1238–1245, July, 1999.     

Ab initio and indo molecular orbital calculations of the geometries and electronic structures of substituted sulfines

Molecular orbital calculations are presented for the parent sulfine and some mono-and dihalogensubstituted sulfines, using ab initio and INDO methods. A partial geometry optimization was performed for nine different sulfines. Charge distributions, potential surfaces and dipole moments were calculated from the wave functions of the optimized geometries. Cis-trans interconversion barriers and electronic spectra are also given. The atomic charges of the S and O atoms are insensitive to substitutions at carbon, and substituents greatly influence the potential in the environment of the molecule. The implications of the results for the chemical behavior of sulfine derivates are briefly discussed and compared with experimental data.     

Ab initio molecular orbital theory study of GaAs clusters: The geometry

We have studied the structure and geometry of neutral and charged atomic clusters consisting of Ga and As atoms via ab initio Hartree–Fock (HF) and second‐order Møller–Plesset methods. The Ga_mAs_n cluster with m≠n composition prefers a nontetrahedral geometry in the charge neutral (q=0) state. These clusters tend to be stable in tetrahedral geometry when appropriately charged. The Ga_mAs_n cluster with m=n composition (1:1 ratio of Ga to As atoms) tends to be stable in a tetrahedral geometry in the charge neutral (q=0) state. With increasing size of the cluster, the geometry of Ga_nAs_n cluster approaches the zinc‐belende‐type crystalline structure. © 2000 John Wiley & Sons, Inc. Int J Quant Chem 77: 563–573, 2000     

Conformational analysis of 1,3-dithiacyclobutane: An ab initio molecular orbital study

The force field governing the in-plane vibrations of pyridine was determined using a revised frequency assignment, and subsequently applied to pyridine-metal complexes. The results show that the frequency shifts of pyridine observed on coordination to a metal are mainly caused by the kinetic coupling between the pyridine molecule and a metal, and that the force field of pyridine remains virtually unchanged.     

An ab initio molecular orbital study of intramolecular H-bonding: 1,3 propanediol

An ab initio molecular orbital calculation has been carried out for three different conformations of 1,3 propanediol, one of which permits intramolecular H-bond studied by ab initio quantum mechanical methods. The ΔE for H-bonding formation is compated to be 0.9 kcal/mole and the charge redistributions and molecular orbital energy changes are compared to those found in intermolecular H-bonds.     

Ab initio molecular orbital studies of polyethylene deformation

A molecular LCAO Hartree-Fock procedure was used to calculate total energies of axially stretched normal paraffins containing up to nine carbon atoms. The results are used to model the mechanical properties of polyethylene.