Time-resolved resonance Raman spectroscopic studies on the triplet excited state of thioxanthone

Thioxanthone has been investigated extensively owing to its unique photochemical and photophysical applications and its solvatochromic behavior. Here, we report the time-resolved resonance Raman studies on the structure of the lowest triplet excited state of thioxanthone in carbon tetrachloride. In addition, FT-IR and FT-Raman techniques have been used to study the vibrational structure in the ground state. To corroborate the experimental findings, density functional theory calculations have been carried out. Isotopic calculations and normal coordinate analysis have been used to help in assigning the observed bands to Raman vibrational modes. Structural information derived from this study is expected to help in better understanding the triplet state photochemistry of thioxanthone.     

Further studies of end groups derived from benzoyl peroxide

There has been a suggestion that, for polymerizations initiated by benzoyl peroxide, the use of benzene as diluent may cause uncertainties about the conclusions reached from studies of the end groups in the resulting polymers. It is now shown that no substantial changes are caused by the replacement of benzene by other solvents. This finding contributes to the conclusion that any capture of benzoyloxy radicals by benzene is only transitory and does not invalidate the deductions made from the results of analyses of polymers for benzoate and phenyl end groups derived from the peroxide. © 1997 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 35 : 2955–2960, 1997     

X-ray absorption spectroscopic studies of high-spin nonheme (alkylperoxo)iron(III) intermediates

The reactions of iron(II) complexes [Fe(T(pt-Bu,i-Pr))(OH)] (1a, Tp(t-Bu,i-Pr) = hydrotris(3-tert-butyl-5-isopropyl-1-pyrazolyl)borate), [Fe(6-Me2BPMCN)(OTf)2] (1b, 6-Me2BPMCN = N,N'-bis((2-methylpyridin-6-yl)methyl)-N,N'-dimethyl-trans-1,2-diaminocyclohexane), and [Fe(L8Py2)(OTf)](OTf) (1c, L8Py2 = 1,5-bis(pyridin-2-ylmethyl)-1,5-diazacyclooctane) with tert-BuOOH give rise to high-spin FeIII-OOR complexes. X-ray absorption spectra (XAS) of these high-spin species show characteristic features, distinct from those of low-spin Fe-OOR complexes (Rohde, J.-U.; et al. J. Am. Chem. Soc. 2004, 126, 16750-16761). These include (1) an intense 1s --> 3d preedge feature, with an area around 20 units, (2) an edge energy, ranging from 7122 to 7126 eV, that is affected by the coordination environment, and (3) a 1.86-1.96 A Fe-OOR bond, compared to the 1.78 A Fe-OOR bond in low-spin complexes. These unique features likely arise from a flexible first coordination sphere in those complexes. The difference in Fe-OOR bond length may rationalize differences in reactivity between low-spin and high-spin FeIII-OOR species.     

Time resolved absorption and resonance Raman spectroscopic studies of the oxidation of benzidine in aqueous solution

We report a time resolved resonance Raman study of transient radicals produced in the pulse radiolytic oxidation of benzidine in aqueous solution. The intense and structured transient absorption in the 400–470 nm region, observed at microsecond times in the acidic medium, is attributed to the benzidine radical cation. The Raman spectrum, observed by excitation in resonance with this absorption, exhibits eight prominent bands which are assigned to planar phenyl vibrations. The ring breathing mode (v₁) at 844 cm^-1 is most highly resonance enhanced, indicating an overall expansion of the ring CC bonds in the excited state. The interring CC bond, with partial double bond character, is characterized by an intense (v₁₃) Raman band at 1335 cm^-1. The frequency of the in-phase v_7a CN stretching vibration is 1540 cm^-1. These frequencies and the presence of weak bands attributable to non-planar phenyl vibrations indicate the radical to be slightly non-planar. The pK_a for the proton loss from the radical cation is 10.87, four units higher than for the aniline radical cation. At high pH the observed transient has a broad and structureless absorption at ∽ 380 nm. It is identified from its resonance Raman features as the 4(4′aminophenyl)anilino radical formed by proton loss from the radical cation. The interring CC bond is characterized by a Raman band at 1292 cm^-1, indicating it to be a single bond. The structure of this neutral radical is highly nonplanar, with little conjugation between the two ring systems so that electronic excitation is primarily confined to the anilino moiety. The acidic and basic forms of the radical react rapidly in second order processes to produce products which absorb strongly at, respectively, 360 and 410 nm.     

An infrared and resonance Raman spectroscopic study of phenylazonaphthol pigments

The IR, resonance Raman (RR) and electronic spectra of two phenylazonaphthol pigments, LRC Scarlet and 4BL Red, have been measured and assignments of the vibrational and electronic spectra were facilitated by ab initio calculation s at the B3-LYP/DZ level. Vibrational spectra indicate that the major species in the solid state are the hydrazo tautomers. Electronic spectra are in accordance with the nature of the electronic transitions predicted by time-dependent B3-LYP/DZ calculations.     

Oxygen-sensing mechanism of HemAT from Bacillus subtilis: a resonance Raman spectroscopic study

Resonance Raman (RR) evidence for structural linkage between the distal side of heme pocket and the signaling domain of an oxygen sensing hemoprotein, HemAT-Bs, is reported. The band-fitting analyses of the RR spectra in the Fe-O2 stretching (nuFe-O2) region revealed the presence of three conformers with nuFe-O2 at 554, 566, and 572 cm-1, which reflect different H-bond strengths on the bound O2 molecule. While recent X-ray analysis for CN--bound HemAT-Bs suggested the importance of Thr95 and Tyr70, the species with the strongest H-bond (554 cm-1) was deleted in the T95A mutant and also by removal of the linker and signal domains; however, the Y70F mutant maintained the same three conformers. A scheme for specific O2 sensing and signaling mechanism is discussed.     

Biogeological Raman spectroscopic studies of Antarctic lacustrine sediments

Analysis of lacustrine sediments is an accepted method for deciphering the palaeoenvironment of a lake's catchment area, as each strata of the sediment gives information about the rock type it was eroded from and also the state of the lake, i.e. oxic or anoxic. Antarctica has long been accepted as a putative analogue for Mars, so the analysis of Antarctic material may give results that can be compared to sediments on Mars. Raman spectroscopy has been selected as the method of analysis as it does not destroy the sample, can be used in situ and requires very little sample preparation. It is a suitable method for analysing both inorganic and organic matter and a miniature spectrometer is currently being developed for use in the field. The results from the spectrometers can serve as a guide for analysing sediments on Mars. It has been shown that Raman spectroscopy can detect and differentiate between oxic and anoxic sediments. Both 1064 and 785 nm wavelengths are suitable for laser excitation of organic and inorganic matter.     

Raman spectroscopic studies of terthiophenes for molecular electronics

The effect of thiol and selenol functionalization on the vibrational spectra and photochemical stability of terthiophene based molecular wires was investigated using surface-enhanced Raman scattering (SERS). The molecules were found to exhibit markedly different properties at the silver surface of the SERS substrate, despite having almost identical Raman spectra in solution and in the solid state. In contrast to terthiophene (3T), the bisthiolterthiophene (T3) and biselenol-terthiophene (Se3) molecules were stable against photoinduced structural changes when adsorbed to the metal surface at low concentrations. This indicates that the strong bonds to the silver surface, via S or Se terminal atoms, leads to a rapid decay of photoexcited states. Comparison with ab initio calculations shows that both T3 and Se3 bind with only one of the functional groups to the Ag surface.     

Surface-enhanced resonance Raman spectroscopic characterization of the protein native structure

Surface-enhanced resonance Raman scattering (SERRS) spectra of biological species are often different from their resonance Raman (RR) spectra. A home-designed Raman flow system is used to determine the factors that contribute to the difference between the SERRS and RR of met-myoglobin (metMb). The results indicate that both the degree of protein-nanoparticles interaction and the laser irradiation contribute to the structural changes and are responsible for the observed differences between the SERRS and RR spectra of metMb. The prolonged adsorption of the protein molecules on the nanoparticle surface, which is the condition normally used for the conventional SERRS experiments, disturbs the heme pocket structure and facilitates the charge transfer process and the photoinduced transformation of proteins. The disruption of the heme pocket results in the loss of the distal water molecule, and the resulting SERRS spectrum of metMb shows a 5-coordinated high-spin heme. The flow system, when operated at a moderately high flow rate, can basically eliminate the factors that disturb the protein structure while maintaining a high enhancement factor. The SERRS spectrum obtained from a 1 x 10 (-7) M metMb solution using this flow system is basically identical to the RR spectrum of a 5 x 10 (-4) M metMb solution. Therefore, the Raman flow system reported here should be useful for characterizing the protein-nanoparticles interaction and the native structure of proteins using SERRS spectroscopy.     

Raman spectroscopic and DSC studies of diglycine-perchlorate (DGPCl)

Single crystals of diglycine perchlorate (DGPCl) and deuterated diglycine perchlorate (DDGPCl) are synthesized and studied using differential scanning calorimetry (DSC) and Raman spectroscopy. DSC data indicated that both DGPCl and DDGPCl undergo a reversible first-order phase transition (solid-solid) at −11.5 °C and −9.3 °C, respectively. The Raman spectra of DGPCl and DDGPCl obtained at ambient temperature are analyzed to infer on the strength of hydrogen bonding in this compound relative to the parent compounds. The occurrence of NH stretching frequency at higher value in DGPCl in comparison with glycine suggests presence of a weak N–H?O hydrogen bond in DGPCl than in glycine. The lower isotropic melting temperature of DGPCl as compared to that of glycine is understood on the basis of the relative strength of hydrogen bonding in these compounds.     

Infrared and Raman spectroscopic studies of glasses with NASICON-type chemistry

Structures of NASICON glasses of the general formula AB₂(PO₄)₃, where A = Li, Na or K and B = Fe, Ga, Ti, V or Nb, have been investigated using vibrational (IR and Raman) spectroscopies. Phosphate species appear to establish an equilibrium via a disproportionation reaction involving a dynamical bond-switching mechanism where both charge and bonds are conserved. B ions in the system acquire different coordinations to oxygens. Alkali ions cause absorptions due to cage vibrations. All the observed spectroscopic features are consistent with speciation involving disproportionation reactions.     

Infrared and Raman spectroscopic studies of l-valine l-valinium perchlorate monohydrate

FT-IR and FT-Raman spectra were recorded and analyzed for l-valine l-valinium perchlorate monohydrate crystals. The wave number assignments have been made for the functional groups, viz. COOH, COO(-), --[NH(3)](+), C--(CH(3))(2), C--C--N and C--H. One of the two amino acid residues remains in the zwitterionic form while the other residue exists in the cationic form. The symmetry of the ClO(4)(-) anion has been found to be lowered corresponding to ClO(2) group. The hydrogen bonds that prevail between amino acid residues, perchlorate anion and water molecule influence the wave numbers of several stretching and deformation modes to deviate from the expected values.     

A review of Fourier-transform Raman spectroscopic studies on polymers

The published work on the FT-Raman spectra of polymers other than elastomers is reviewed and assessed. Experimental techniques, including sampling procedures, measurements at elevated temperatures and microscope accessories are considered first, followed by the scope for quantitative measurements. The survey of published work on polymers is arranged into the subdivisions hydrocarbon polymers, polyamides and polyimides, poly(aryl ether ketone) and poly(aryl ether ether ketone) and the corresponding sulphones, halogenated polymers, highly conjugated polymers, various other polymers, polymerization kinetic studies and thin polymer films.     

Resonance Raman spectroscopic studies of hydroperoxo-myoglobin at cryogenic temperatures

In agreement with previous reports (Gasyna, Z. FEBS Lett. 1979, 106, 213-218 and Leibl, W.; Nitschke, W.; Huettermann, J. Biochim. Biophys. Acta 1986, 870, 20-30) radiolytically reduced samples of oxygenated myoglobin at cryogenic temperatures have been shown by optical absorption and EPR studies to produce directly the peroxo-bound myoglobin at 77 K. Annealing to temperatures near 185 K induces proton transfer, resulting in the formation of the hydroperoxo heme derivative. Resonance Raman studies of the annealed samples has permitted, for the first time, the direct observation of the key nu(Fe-O) stretching mode of the physiologically important Fe-OOH fragment of this ubiquitous intermediate. The assignment of this mode to a feature appearing at 617 cm(-1) is strongly supported by documentation of a 25 cm(-1) shift to lower energy upon substitution with (18)O(2) and by a 5 cm(-1) shift to lower energy for samples prepared in solutions of deuterated solvent.     

Surface-enhanced Raman spectroscopic studies of coactivator-associated arginine methyltransferase 1

We report, for the first time, the surface-enhanced Raman spectra of an important enzyme, coactivator-associated arginine methyltransferase 1 (CARM1), involved in various biological activities such as tumor suppressor function and stem cell differentiation. We have employed surface-enhanced Raman scattering (SERS) to obtain insight into the structural details of CARM1 by adsorbing it to silver (Ag) nanoparticles. The enzyme retains its activity even after its adsorption onto Ag nanoparticles. We observe strong SERS modes arising from amide vibrations and aromatic ring amino acids. The SERS spectra revealed amide I bands at 1637 cm(-1) and 1666 cm(-1), which arise as a result of the alpha helix of the protein and the polypeptide backbone vibration of a random coil, respectively. In order to confirm the amide vibrations, we have performed SERS on deuterated CARM1, which exhibits a clear red shift in amide band positions. The SERS spectra may provide useful information, which could be harnessed to study the functional interactions of CARM1 with small molecule modulators.     

Pulse radiolysis studies of intermolecular charge transfers involving tryptophan and three-electron-bonded intermediates derived from methionine

The oxidation processes of the radiation-generated, three-electron-bonded intermediates AcMet₂ [S??S]⁺ and AcMet [S??Br] were investigated by pulse radiolysis via their reactions with tryptophan (TrpH). These intermediates were derived from N-acetyl-methionine amide (N-AcMetNH₂) and N-acetyl-methionine methyl ester (N-AcMetOMe). The bimolecular rate constant k of the reaction between each intermediate and l-tryptophan (TrpH) was measured. For N-AcMetNH₂, k for the reaction of AcMet₂ [S??S]⁺ with TrpH were 3.4?×?10⁸ and 2.2?×?10⁸?dm³?mol^?1?s^?1 at pH?=?1 and 4.5, respectively. For N-AcMetOMe, k for the reaction of AcMet₂ [S??S]⁺ with TrpH were 4.0?×?10⁸ and 2.8?×?10⁸?dm³?mol^?1?s^?1 at pH 1 and 4.5, respectively. The rate constants for the intermolecular transformation of Met [S??Br] into TrpH⁺ or Trp were also estimated. For N-AcMetNH₂, k for the reaction of AcMet₂ [S??Br] with TrpH were 2.6?×?10⁸ and 3.3?×?10⁸?dm³?mol^?1?s^?1 at pH 1 and 4.5, respectively. Related mechanisms were discussed.     

Synthesis and spectroscopic studies of nickel(II) chalcogenolates derived from 1,2-diarylchalcogenolato-o-xylene

Nickel(II) chalcogenolate complexes [Ni(L-L)₂(dppe) Cl₂] (1, 2) have been prepared in high yields by reacting 1,2-diarylchalcogenolato-o-xylene, o-C₆H₄(CH₂EAr)₂ (E = Se or Te; Ar = Ph, C₆H₄OMe-4 and C₆H₄OEt-4), generated in situ, with Ni(dppe)Cl₂ [dppe = 1,2-bis(diphenylphosphino)ethane] in benzene. The structures were established by elemental analyses, molar conductance, i.r. and Raman, electronic ¹H- and ³¹P-n.m.r. and mass spectral data. The analytical and spectroscopic data are consistent with an octahedral geometry around nickel in (1) and (2). The ³¹P-n.m.r. spectra indicate their cis configuration in solution. This revised version was published online in June 2006 with corrections to the Cover Date.