Classification of malignant gliomas by infrared spectroscopic imaging and linear discriminant analysis

Infrared (IR) spectroscopy provides a sensitive molecular fingerprint for tissue without external markers. Supervised classification models can be trained to identify the tissue type based on the spectroscopic fingerprint. Infrared imaging spectrometers equipped with multi-channel detectors combine the spectral and spatial information. Tissue areas of 4 x 4 mm(2) can be analyzed within a few minutes in the macroscopic imaging mode. An approach is described to apply this methodology to human astrocytic gliomas, which are graded according to their malignancy from one to four. Multiple IR images of three tissue sections from one patient with a malignant glioma are acquired and assigned to the six classes normal brain tissue, astrocytoma grade II, astrocytoma grade III, glioblastoma multiforme grade IV, hemorrhage, and other tissue by a linear discriminant analysis model which was trained by data from a single-channel detector. Before the model is applied here, the spectra are shown to be virtually identical. The first specimen contained approximately 95% malignant glioma regions, that means astrocytoma grade III or glioblastoma. The smaller percentage of 12-34% malignant glioma in the second specimen is consistent with its location at the tumor periphery. The detection of less than 0.2% malignant glioma in the third specimen points to a location outside the tumor. The results were correlated with the cellularity of the tissue which was obtained from the histopathologic gold standard. Potential applications of IR spectroscopic imaging as a rapid tool to complement established diagnostic methods are discussed.     

Trends in Fourier transform infrared spectroscopic imaging

Fourier transform infrared (FTIR) spectroscopic imaging is a relatively new method that has received great attention as a new field of analytical chemistry. The greatest benefit of this technique lies in the high molecular sensitivity combined with a spatial resolution down to a few micrometers. Another advantage is the ability to probe samples under native conditions, which allows new insights into samples without the need for fixation, stains, or an additional marker. Advances in instrumentation have made FTIR spectroscopic imaging the tool of choice for an increasing number of applications. The main applications are in the bioanalytical chemistry of cells and tissue, polymers, and recently as well as in homeland security. This report gives a short overview of current developments and recent applications. Figure FTIR image of a polymer blend reveals the chemical composition. Online Abstract Figure (365 KB).     

Detection of illicit substances in fingerprints by infrared spectral imaging

FTIR and Raman spectral imaging can be used to simultaneously image a latent fingerprint and detect exogenous substances deposited within it. These substances might include drugs of abuse or traces of explosives or gunshot residue. In this work, spectral searching algorithms were tested for their efficacy in finding targeted substances deposited within fingerprints. “Reverse” library searching, where a large number of possibly poor-quality spectra from a spectral image are searched against a small number of high-quality reference spectra, poses problems for common search algorithms as they are usually implemented. Out of a range of algorithms which included conventional Euclidean distance searching, the spectral angle mapper (SAM) and correlation algorithms gave the best results when used with second-derivative image and reference spectra. All methods tested gave poorer performances with first derivative and undifferentiated spectra. In a search against a caffeine reference, the SAM and correlation methods were able to correctly rank a set of 40 confirmed but poor-quality caffeine spectra at the top of a dataset which also contained 4,096 spectra from an image of an uncontaminated latent fingerprint. These methods also successfully and individually detected aspirin, diazepam and caffeine that had been deposited together in another fingerprint, and they did not indicate any of these substances as a match in a search for another substance which was known not to be present. The SAM was used to successfully locate explosive components in fingerprints deposited on silicon windows. The potential of other spectral searching algorithms used in the field of remote sensing is considered, and the applicability of the methods tested in this work to other modes of spectral imaging is discussed.     

Fourier transform infrared imaging and MR microscopy studies detect compositional and structural changes in cartilage in a rabbit model of osteoarthritis

Assessment of subtle changes in proteoglycan (PG) and collagen, the primary macromolecular components of cartilage, which is critical for diagnosis of the early stages of osteoarthritis (OA), has so far remained a challenge. In this study we induced osteoarthritic cartilage changes in a rabbit model by ligament transection and medial meniscectomy and monitored disease progression by infrared fiber optic probe (IFOP) spectroscopy, Fourier transform infrared imaging spectroscopy (FT-IRIS), and magnetic resonance imaging (MRI) microscopy. IFOP studies combined with chemometric partial least-squares analysis enabled us to monitor progressive cartilage surface changes from two to twelve weeks post-surgery. FT-IRIS studies of histological sections of femoral condyle cartilage revealed that compared with control cartilage the OA cartilage had significantly reduced PG content 2 and 4 weeks post-surgery, collagen fibril orientation changes 2 and 4 weeks post-surgery, and changes in collagen integrity 2 and 10 weeks post-surgery, but no significant changes in collagen content at any time. MR microscopy studies revealed reduced fixed charge density (FCD), indicative of reduced PG content, in the OA cartilage, compared with controls, 4 weeks post-surgery. A non-significant trend toward higher apparent MT exchange rate, k_m, was also found in the OA cartilage at this time point, suggesting changes in collagen structural features. These two MR findings for FCD and k_m parallel the FT-IRIS findings of reduced PG content and altered collagen integrity, respectively. MR microscopy studies of the cartilage at the 12-week time point also found a trend toward longer T ₂ values and reduced anisotropy in the deep zone of the OA cartilage, consistent with increased hydration and less ordered collagen. These studies reveal that FT-IRIS and MR microscopy provide complementary data on compositional changes in articular cartilage in the early stages of osteoarthritic degradation.     

Non-invasive detection of superimposed latent fingerprints and inter-ridge trace evidence by infrared spectroscopic imaging

Current latent print and trace evidence collecting technologies are usually invasive and can be destructive to the original deposits. We describe a non-invasive vibrational spectroscopic approach that yields latent fingerprints that are overlaid on top of one another or that may contain trace evidence that needs to be distinguished from the print. Because of the variation in the chemical composition distribution within the fingerprint, we demonstrate that linear unmixing applied to the spectral content of the data can be used to provide images that reveal superimposed fingerprints. In addition, we demonstrate that the chemical composition of the trace evidence located in the region of the print can potentially be identified by its infrared spectrum. Thus, trace evidence found at a crime scene that previously could not be directly related to an individual, now has the potential to be directly related by its presence in the individual-identifying fingerprints. A portion of this work was presented at the 16th Meeting of the International Association of Forensic Sciences, Montpellier, France September 2–7, 2002.     

Development of single-beam wide-field infrared imaging to study sub-cellular neuron biochemistry

Multi-beam wide-field imaging using synchrotron mid-infrared light sources coupled with focal plane array detectors has provided a major breakthrough to the field of bio-spectroscopic imaging. The ability to collect sub-cellular molecular images in minutes has opened the door to a new era of biochemical studies. Although a multi-beam approach is the superior method to this form of imaging, it requires a specialized set of beamline optics, which may not be compatible with existing mid-infrared microscopy beamlines, or research programs/applications currently in place (some of which do not require an imaging component). In this investigation we demonstrate that a single-beam approach can be utilized in a similar manner to multi-beam imaging, to collect sub-cellular biochemical images of brain neurons in a rapid time frame, without extensive modification of an existing beamline configuration. This study uses an applied example, imaging the same neuron in situ within a brain tissue section, with both synchrotron and thermal sources. The results highlight the advantage of improved spatial resolution/image quality and spectral quality (signal to noise ratio) that is obtained when a high magnification and high numerical aperture objective (52×, 0.65) is coupled to a synchrotron mid-infrared lightsource with a focal plane array detector. The approach we report may prove to be particularly appealing to numerous existing mid-infrared beamlines, allowing straightforward integration of sub-cellular biochemical imaging with existing non-imaging research applications.     

Quantitative magnetic resonance imaging of urea and lysozyme in protein chromatography

Magnetic resonance imaging (MRI) techniques have been implemented to enable quantitative imaging of protein and urea within a 5 ml HiTrap size-exclusion chromatography desalting column, without introduction of contrast agents. One-, two- and three-dimensional images of urea injected at concentrations of 2, 4, 6 and 8 M were acquired. One-dimensional profiles of lysozyme at concentrations between 5 and 25 mg ml(-1) were also obtained. All data were accurate to within +/- 15% when compared to the known amount injected. Quantitative MRI elution profiles of both urea and lysozyme were then obtained in real-time during a desalting separation.     

Fast FTIR imaging: A new tool for the study of semicrystalline polymer morphology

The distribution of chemical species and the degree of orientation in semicrystalline polymer systems have been studied using fast Fourier transform infrared (FTIR) imaging. A variety of poly(ethylene glycol) systems, including pure polymer, high and low molecular weight blends, and blends with amorphous polymers, were studied. It is shown that fast FTIR imaging can be used to determine the distribution of species with different molecular weights and can be used to determine the degree of segregation of different components in blends with amorphous polymers. Additionally, by employing an infrared polarizer, the degree of orientation was determined in these systems by the generation of spatially‐resolved dichroic ratio images. © 1999 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 37: 2353–2359, 1999     

New CD derivatives as self-assembling contrast agents for magnetic resonance imaging (MRI)

A way to improve Magnetic Resonance Imaging is to deliver a larger number of Imaging Probe units to the target site. Aiming at this objective, we prepared a self-assembling system consisting of: 1) a β-cyclodextrin (β-CD) bearing a covalently bonded Gd complex (DTPA-Lys); 2) a polypeptide containing a high percentage of tyrosine residues (PLT); 3) a second β-CD derivative bearing a covalently bonded peptide vector (CCK8) that can recognize a specific cell-membrane receptor. Both β-CD derivatives can form stable inclusion complexes with the aromatic moieties of the polypeptide. The formation of a supramolecular adduct having a long reorientational correlation time entailed a marked relaxivity increase (per Gd³⁺ ion), which recommends it as a promising model for detail enhancement procedures at the target site. Out of three different synthetic pathways that could be used for binding a CD to DTPA, the most convenient one involved a micro-wave(MW)-assisted Mannich aminomethylation of a monopropargyl β-CD by the primary amino group of t-butyl-DTPA-Lys.     

Synthesis and characterization of fluorescent magneto polymeric nanoparticles (FMPNs) for bimodal imaging probes

Novel bifunctional fluorescent magneto polymeric nanoprobes (FMPNs) were synthesized to provide simultaneous diagnostic information via magnetic resonance imaging (MRI) and optical imaging. FMPNs consist of ultra-sensitive magnetic nanocrystals that function as MR probes combined with Nile Red, which functions as a fluorescent probe. FMPNs were encapsulated by a nano-emulsion method in polyvinyl alcohol (PVA, 87–89% hydrolyzed) through a matrix of polymethyl methacrylate (PMMA). FMPNs exhibited excellent colloidal stability and monodispersity. The production of MR and optical images demonstrated that FMPNs have potential as dual-mode imaging agents.     

以阿拉伯半乳聚糖为载体的磁共振成像造影剂的研究

合成了阿拉伯半乳聚糖修饰的DTPA钆配合物,用红外光谱、元素分析、ICP-AES等手段进行了表征,用竞争性方法研究了其在水溶液中的稳定性,测试了其在水中及BSA溶液中的弛豫性能,并进行了体内成像实验.结果表明,其弛豫效率是目前临床所用造影剂Gd-DTPA的1.5～2.0倍,对肝脏和肾脏MRI信号具有良好的增强效果,是比较好的潜在磁共振成像造影剂.     

Two- and three-dimensional mapping of the iron distribution in the apoplastic fluid of plant leaf tissue by means of magnetic resonance imaging

A three-dimensional nuclear magnetic resonance imaging (MRI) technique for non-invasive mapping of iron in the apoplastic fluid of plant compartments was developed. The new technique was applied to a leaf of red stem dogwood (Cornus stolonifera). The results are compared with MRI measurements of iron distributions in two dimensions and with total reflection X-ray fluorescence results.     

An infrared spectroscopic study of changes in unsaturation resulting from irradiation of isotropic and uniaxially oriented polyethylene films in the presence of acetylene

Interchain bridges of unsaturated double bonds have been proposed to form in amorphous regions, when polyethylene is irradiated in the presence of acetylene. We have corroborated the formation of these bridges by infrared spectroscopic studies. The double bonds are composed mainly of trans-olefin and vinyl end groups, formed as a result of competing radical-radical termination and hydrogen atom abstraction reactions. The hydrogen atom abstraction reaction becomes insignificant in uniaxially oriented high-density polyethylene having a draw ratio of 7.5, because of the alignment and positioning of the initiating radical pairs. During in vacuo irradiation and annealing only in-chain trans-olefins are usually formed. © 1994 John Wiley & Sons, Inc.     

SPR imaging as a tool for detecting mucin – anti-mucin interaction. Outline of the development of a sensor for near-patient testing for mucin

Sensors able to provide ‘yes’/‘no’ answers have become of interest in recent years, especially in the fields of environmental research and healthcare. We describe a procedure based on surface plasmon resonance imaging (SPRI) to investigate the interaction between mucin and anti-mucin antibody, and we outline the development of an alarm sensor for the protein mucin, whose high concentration in saliva, blood or tissue is related to illnesses such as gingivitis, peridontitis or even cancer. Anti-mucin gastric antibodies are immobilised onto a gold surface. The immobilisation is evaluated for neat gold chips and for polymer-modified gold surfaces. We found that two different pHs are required, one for the immobilisation of the antibodies on gold (pH 5.5) and a different one for optimal interaction between the sample and the antibody layer (pH 7.0). Finally, we briefly demonstrate the application of the sensor to real saliva samples, both mucin-less and mucin-containing, evaluating the potential of the sensor to discriminate between healthy and ill.     

Parallel variable selection of molecular dynamics clusters as a tool for calculation of spectroscopic properties

Clusters of a solute and a few solvent molecules obtained from molecular dynamics (MD) are a powerful tool to study solvation effects by advanced quantum chemical (QC) methods. For spectroscopic properties strongly dependent on the solvation, however, a large number of clusters are needed for a good convergence. In this work, a parallel variable selection (PVS) method is proposed that in some cases efficiently reduces the number of clusters needed for the averaging. The mass, charge, or atomic density MD distributions are used as a secondary variable to preselect the most probable cluster geometries used for averaging of solute spectral properties. When applied to nuclear magnetic resonance chemical shift of a model alcohol, the method allowed one to significantly reduce the total computational time, by a factor of 10. Even larger savings were achieved for the modeling of Raman and Raman optical activity spectra of (S)‐lactamide molecule dissolved in water. The results thus suggest that the PVS method can be generally used for simulations of spectroscopic properties of solvated molecules and makes multiscale MD/QC computations more affordable. © 2012 Wiley Periodicals, Inc.     

Volume-related Efficiency of Gadolinium Polyoxometalates as MRI Contrast Agents

Two gadolinium polyoxometalates, KCs4[Gd（a-SiW11O39）].25HzO（POM-1） and K13[Gd（f12-SiWllO39）a]·27H2O（POM-2）, have been evaluated as the candidates of potential magnetic resonance imaging Tl（longitudinal relaxation） contrast agents. Longitudinal relaxivities of POM-2 are much higher than those of POM-1 in pure water and protein solution, respectively. However, compared with POM-1, POM-2 interacts with protein more strongly through electrostatic interaction, which is comfirmed by the fluoresence quenching of human serum albumin（HSA） in solu- tions with different polyoxometalate concentrations. Meanwhile, POM-1 presentes much lower cytotoxicity in the cell viability tests.     

夹心型锰杂多配合物作为磁共振成像造影剂的研究

以两种夹心型锰杂多配合物K10[Mn4(PW9O34)2]·22H2O和Na16[Mn4(H2O)2(P2W15O56)2]·53H2O作为研究对象, 采用元素分析和红外光谱对其结构进行了表征, 测试其在水中、牛血清白蛋白及运铁蛋白溶液中的弛豫效率, 并进行了大鼠活体成像实验. 结果表明, 这两种锰杂多配合物的弛豫效率高于或接近于目前临床常用的造影剂Gd-DTPA, 对肝脏和肾脏MRI信号具有良好的增强效果, 是比较好的潜在磁共振成像造影剂候选化合物.     

Long-circulating gadolinium-loaded liposomes: potential use for magnetic resonance imaging of the blood pool

In our previous paper, we reported a method of liposome loading with Gadolinium (Gd) via so called polychelating amphiphilic polymer (PAP). A novel Gd-containing polymeric probe, suitable for the incorporation into the liposomal membrane, was prepared from a low-molecular-weight DTPA-polylysine by linking its N-terminus to a lipid anchor, NGPE-PE. When compared with known membranotropic MR probes, such as Gd-DTPA-SA and Gd-DTPA-PE, liposomes containing new membrane-bound polychelator possess enhanced relaxivity for water protons resulting in an increase of tissue signal intensity on MR images. In this study, we developed the optimized protocol to prepare a liposomal MR contrast agent with high relaxivity and narrow size distribution. Gd-containing liposomes were additionally modified with PEG to provide longevity in vivo. We also demonstrated that upon intravenous administration in rabbit and dog, the new preparation causes a prolonged decrease in the blood T₁ value (reflecting the proton relaxation rate in the blood) and may be considered as a potential contrast agent for MRI of the blood pool.     

A review of recent trends in polymer characterization using non-destructive vibrational spectroscopic modalities and chemical imaging

This review focuses on the recent developments in vibrational spectroscopy and chemical imaging (i.e. Raman, Near Infrared, Mid Infrared) to characterize polymers in diverse forms, their behaviour and transient phenomenon. First, important polymeric properties and traditional methods of their characterization are outlined. Then relative advantages & disadvantages have been presented of different characterization methods are presented. This is followed by a detailed review of applications of chemical imaging and spectroscopic techniques in polymer characterization, including the limitations encountered. The article ends with a discussion on the future of chemical imaging with regards to polymer characterization.