Ab initio molecular orbital study of structures and energetics of Si(3)H(2), Si(3)H(2) (+), and Si(3)H(2) (-)

The geometric structures, isomeric stabilities, and potential energy profiles of various isomers and transition states in Si(3)H(2) neutral, cation and anion are investigated at the coupled-cluster singles, doubles (triples) level of theory. For the geometrical survey, the basis sets used are of the Dunning's correlation consistent basis sets of triple-zeta quality (cc-pVTZ) for the neutral and cation and the Dunning's correlation consistent basis sets of double-zeta quality with diffuse functions (aug-cc-pVDZ) for the anion. For the final energy calculations, the aug-cc-pVTZ: Dunning's correlation consistent basis sets of triple-zeta quality with diffuse functions and cc-pVQZ: Dunning's correlation consistent basis sets of quadruple-zeta quality basis sets are used for the neutral and the aug-cc-pVTZ ones for the cation and anion. The global minimum neutral (I-1: (1)A(1)) has the same framework as that (cyclopropenylidene) of the C(3)H(2) molecule. Other low-lying three isomers (I-2, I-3, and I-4) are also predicted to be within 20 kJ/mol. Five transition states are optimized and their energy relationships with the isomers are clarified. The geometric structure of the global minimum cation (C-1: (2)A(1)) has the same framework as that of the neutral, but that of the anion (A-1: (2)A(')) differs very much from those of the neutral and cation. The calculated vertical and adiabatic ionization potentials from the global minimum neutral (I-1) are 7.85 and 7.77 eV, respectively. The adiabatic electron affinity of the neutral I-1 and the electron detachment energy of the global minimum anion (A-1) are predicted to be 1.21 and 1.92 eV, respectively. The two-electron three-centered bond is widely observed in the present Si(3)H(2) neutral, cation, and anion. The contour plots of their localized molecular orbitals clearly show the existence of such nonclassical chemical bonds.     

Ab initio study of C + H3+ reactions

The reaction C + H3+ --> CH(+) + H2 is frequently used in models of dense interstellar cloud chemistry with the assumption that it is fast, i.e. there are no potential energy barriers inhibiting it. Ab initio molecular orbital study of the triplet CH3+ potential energy surface (triplet because the reactant carbon atom is a ground state triplet) supports this hypothesis. The reaction product is 3 pi CH+; the reaction is to exothermic even though the product is not in its electronic ground state. No path has been found on the potential energy surface for C + H3+ --> CH2(+) + H reaction.     

Ab initio energetics of nonsubstituted monocyclic pyrones

The monocyclic nonsubstituted pyrones were studied computationally using state-of-the-art ab initio composite computational techniques. Combination of the accurate energies so obtained with conveniently chosen isodesmic or homodesmotic chemical reactions lead to very confident predictions of their corresponding standard enthalpy of formation. The internal consistency of the results obtained from a vast number of independent chemical schemes serves as a further support of the quality of our results, which are thus proposed to establish the energetics of α-pyrone and γ-pyrone.     

Ab initio surface reaction energetics of SiH4 and Si2H6 on Si(001)-(2 x 2)

First-principles pseudopotential calculations, within a simple dynamically constrained scheme, have been performed to investigate the reaction of 0.25 ML coverage of SiH4 and Si2H6 with the Si(001)-(2 x 2) surface. The silane molecule (SiH4) is adsorbed on to the surface at a number of different sites (on dimer, interrow, or intrarow) with varying barrier heights. Two distinct structures, which are similar in energy, arise from the initial dissociative reaction SiH4-->SiH3(silyl) + H, where the dissociated species are adsorbed either on the same dimer components or on adjacent dimer components. Several further decays of silyl from SiH4 are presented in two separate regimes of high and low ambient hydrogen coverages. The decomposition of silyl can form two different bridging structures: an on top or an intrarow bridging structure in both of the two hydrogen coverage regimes. The disilane molecule (Si2H6) is also adsorbed upon this surface with varying energy barriers, resulting in a dissociation reaction where two SiH3 species are adsorbed on one dimer or in an adjacent dimer configuration. Plausible energy reaction paths for the above models are presented. The stability of the SiH2 species is also discussed.     

Ab initio molecular-orbital study of the binding of ZnII with SH2 and SH−

This paper reports an ab initio molecular-orbital (MO ) study of binding of SH₂ and SH^? with Zn^II. The mechanism of binding of Zn^II with these ligands is investigated using a detailed analysis of the energy decomposition and of the electronic distribution. The dependence of the results on the choice of the basis set for sulfur (in particular the effect of incorporation of diffuses p and d orbitals) on the geometry of ligand binding, the binding energy, and the proton affinity of SH^? are investigated. Comparison made with the corresponding results concerning the binding of OH₂, OH^?, and NH₃ shows that sulfur binding is less favorable although more covalent. Both sulfur ligands show a marked preference for angular conformations for binding with the metal ion. The effect of Zn^II binding on the ease of deprotonation of H₂S is quite similar to the corresponding effect found earlier for H₂O.     

ChemInform Abstract: Ab initio MO Study of Diverse Si3H3+ Isomers.

ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a “Full Text” option. The original article is trackable via the “References” option.     

Nitramine anion fragmentation: A mass spectrometric and Ab initio study

The fragment ion formation characteristics of the radical anions generated from hexahydro-1,3,5-trinitrotriazine (RDX) and its three nitroso metabolites were studied using GC/MS with negative chemical ionization (NCI) to understand the fragmentation mechanisms responsible for the formation of the most abundant ions observed in their NCI mass spectra. Ab initio and density functional theory calculations were used to calculate relative free energies for different fragment ion structures suggested by the m/z values of the most abundant ions observed in the NCI mass spectra. The NCI mass spectra of the four nitramines are dominated by ions formed by the cleavage of nitrogen-nitrogen and carbon-nitrogen bonds in the atrazine ring. The most abundant anions in the NCI mass spectra of these nitramines have the general formulas C(2)H(4)N(3)O (m/z 86) and C(2)H(4)N(3)O(2) (m/z 102). The analyses of isotope-labeled standards indicate that these two ions are formed by neutral losses that include two exocylic nitrogens and one atrazine ring nitrogen. Our calculations and observations of the nitramine mass spectra suggest that the m/z 86 and m/z 102 ions are formed from either the (M--NO)(-) or (M--NO(2))(-) fragment anions by a single fragmentation reaction producing neutral losses of CH(2)N(2)O or CH(2)N(2)O(2) rather than a set of sequential reactions involving neutral losses of HNO(2) or HNO and HCN.     

Ab initio study of structures and energies of Al2H4 and Al2H 4 −

The low-lying isomers of Al₂H₄ and their anions are investigated with the hybrid density functional B3LYP, the coupled-cluster CCSD and CCSD(T) methods, and the electron propagator theory. The positive adiabatic electron affinities 5,798 and 10,112 cm⁻¹ are predicted for the neutral C_2v and D_2d symmetric isomers, respectively. The D_2h symmetric anion is more stable by 852 cm⁻¹ than the C_2v symmetric anion. The photodetachment spectra for Al₂H₄⁻ anions at the C_2v and D_2h symmetries are simulated on the basis of the Franck–Condon factor calculations, indicating a reasonable way to study the transition state of the intramolecular torsion process     

An ab initio study of the structures and energetics of CH3OCl and CH3ClO

The equilibrium structures, vibrational spectra, and heats of formation for CH₃OCl and CH₃ClO have been estimated using high levels of ab initio molecular orbital theory. The lowest energy isomer is found to be CH₃OCl, and its heat of formation is estimated to be −13.5±2 kcal mol⁻¹, in good agreement with bond additivity estimates. Results for the CH₃ClO isomer are presented for the first time, and it is found to be 40.5 kcal mol⁻¹ higher in energy relative to CH₃OCl. ©1999 John Wiley & Sons, Inc. Int J Quant Chem 73: 29–35, 1999     

Ab initio molecular orbital study on structures and energetics of CH3O−(H2O)n and CH3S−(H2O)n in gas phase

The purpose of this article was to calculate the structures and energetics of CH₃O⁻(H₂O)_n and CH₃S⁻(H₂O)_n in the gas phase; the maximum number of water molecules that can directly interact with the O of CH₃O⁻; and when n is larger, we asked how the CH₃O⁻ and CH₃S⁻ moiety of CH₃O⁻(H₂O)_n and CH₃S⁻(H₂O)_n changes and how we can reproduce experimental ΔH ⁰_{n−1, n}. Using the ab initio closed-shell self-consistent field method with the energy gradient technique, we carried out full geometry optimizations with the MP2/aug-cc-pVDZ for CH₃O⁻(H₂O)_n (n=0, 1, 2, 3) and the MP2/6–31+G(d,p) (for n=5, 6). The structures of CH₃S⁻(H₂O)_n (n=0, 1, 2, 3) were fully optimized using MP2/6–31++G(2d,2p). It is predicted that the CH₃O⁻(H₂O)₆ does not exist. We also performed vibrational analysis for all clusters [except CH₃O⁻(H₂O)₆] at the optimized structures to confirm that all vibrational frequencies are real. Those clusters have all real vibrational frequencies and correspond to equilibrium structures. The results show that the above maximum number of water molecules for CH₃O⁻ is five in the gas phase. For CH₃O⁻(H₂O)_n, when n becomes larger, the C—O bond length becomes longer, the C—H bond lengths become smaller, the HCO bond angles become smaller, the charge on the hydrogen of CH₃ becomes more positive, and these values of CH₃O⁻(H₂O)_n approach the corresponding values of CH₃OH with the n increment. The C—O bond length of CH₃O⁻(H₂O)₃ is longer than the C—O bond length of CH₃O⁻ in the gas phase by 0.044 Å at the MP2/aug-cc-pVDZ level of theory. The structure of the CH₃S⁻ moiety in CH₃S⁻(H₂O)_n does not change with the n increment. ©1999 John Wiley & Sons, Inc. J Comput Chem 20: 1138–1144, 1999     

Ab initio study of long-range electron transfer between biphenyl anion radical and naphthalene

After the separation of the donor, the aeceptor, and the σ-type bridge from the π-σ-π system, the geometries of biphenyl, biphenyl anion radical, naphthalene, and naphthalene anion radical are optimized, and then the reorganization energy for the intermolecular electron transfer (ET) at the levels of HF/4-31G and HF/DZP is calculated. The ET matrix elements of the self-exchange reactions of the π-σ-π systems have been calculated by means of both the direct calculation based on the variational principle, and the transition energy between the molecular orbitals at the linear coordinate R=0.5. For the cross reactions, the ET matrix element and the geometry of the transition state are determined by searching the minimum energy splitting △_(min) along the reaction coordinate. In the evaluation of the solvent reorganization energy of the ET in solution, the Marcus' two-sphere model has been invoked. A few of ET rate constants for the intramolecular ET reactions for the π-σ-π systems, which contain     

Ab initio molecular dynamics of protonated water clusters by integrated multicenter molecular-orbital method

To analyze large-scale cluster systems theoretically, we recently developed an "integrated multicenter molecular-orbital" (IMiC-MO) method. This method calculates the force of an entire system by dividing the system into small regions. We used the method to analyze the effect of cluster size and the process of hydrogen bond network (HBN) growth to form H(+)(H(2)O)(n) (n = 9, 17, and 33) clusters. Our simulations reveal that H(3)O(+) and water molecules in the first solvation shell function take an important role to grow the HBN. In addition, the number of hydrogen donors in each water molecule is strongly related to the shape of the HBN.     

Ab initio structure of 3p4p in Si I

Multiconfiguration calculations have been performed in order to estimate ab initio energies for the configuration 3p4p in Si I. A preliminary attempt has also been made to calculate E2 transition rates for transitions from levels of 3p ² to those of 3p4p. However, these rates show a gauge dependence, which indicates that further correlation needs to be included to obtain accurate rates and lifetimes.     

Ab initio study of molecular structures and excited states in anthocyanidins

The structural and electronic characters of four types of hydroxyl group-substituted anthocyanidins (pelargonidin, cyanidin, delphinidin, and aurantinidin) were examined using quantum chemical calculations. For these cationic molecules, both the planar and non-planar structures in the electronic ground state were determined at the B3LYP/D95 level of theory. We revealed that the planar structure is slightly more stable than the non-planar structure for each molecule. For the optimized planar structures, single excitation-configuration interaction (SE-CI) based on the restricted Hartree-Fock (RHF) wave function was evaluated and the electronic character in the low-excited states was discussed in terms of the MO theory. Symmetry adapted cluster (SAC)/SAC-CI calculations were also carried out to estimate the excitation energies precisely. The results showed that hydroxylation of the phenyl group causes a change in the excitation energies without taking the solvent effects into account. The results are in agreement with spectral experiments and previous MO calculations.     

Ab initio study of long-range electron transfer between biphenyl anion radical and naphthalene

After the separation of the donor, the acceptor, and the σ-type bridge from the π-σ-π system, the geometries of biphenyl, biphenyl anion radical, naphthalene, and naphthalene anion radical are optimized, and then the reorganization energy for the intermolecular electron transfer (ET) at the levels of HF/4-31G and HF/DZP is calculated. The ET matrix elements of the self-exchange reactions of theπ-σ-π systems have been calculated by means of both the direct calculation based on the variational principle, and the transition energy between the molecular orbitals at the linear coordinateR = 0.5. For the cross reactions, the ET matrix element and the geometry of the transition state are determined by searching the minimum energy splitting Δ_min along the reaction coordinate. In the evaluation of the solvent reorganization energy of the ET in solution, the Marcus’ two- sphere model has been invoked. A few of ET rate constants for the intramolecular ET reactions for the π-σ-π systems, which contain the biphenylyl as the donor and both biphenylyl and naphthyl as the acceptor, have been obtained. Project supported by the National Natural Science Foundation of China (Grant Nos. 29706104 and 29573112), the State Key Laboratory of Theoretical and Computational Chemistry of Jilin University.     

Ab initio calculation on the H3 activated complex

A full configuration interaction treatment has been carried out for linear, symmetrical H₃ activated complex, with a limited basis set of Slater orbitals. A similar calculation is performed on H₂ in order to obtain an estimate of the activation energy of the reaction H+H₂=H₂+H. The variation of nonlinear parameters in the basis set is studied and the different behaviour of the H₃ and H₂ resulting wave functions examined. — A larger basis set is needed.

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Zusammenfassung Eine vollstÄndige CI-Behandlung wurde für einen linearen, symmetrischen, aktivierten H₃-Komplex mit einem begrenzten Basissatz von Slaterorbitalen durchgeführt. Eine Ähnliche Rechnung wird für H₂ ausgeführt, um eine AbschÄtzung der Aktivierungsenergie der Reaktion H+H₂=H₂+H zu erhalten. Die Variation von nichtlinearen Parametern im Basissatz wird untersucht und das verschiedenartige Verhalten der resultierenden H₃ und H₂ Wellenfunktion überprüft. — Ein grö\erer Basissatz wird benötigt!

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Résumé Interaction de configurations totale pour le complexe activé H₃ linéaire et symétrique, dans une base limitée d'orbitales de Slater. Un calcul analogue a été effectué sur H₂ afin d'évaluer l'énergie d'activation de la réaction H+H₂=H₂+H. La variation des paramétres non linéaires de la base est étudiée, et l'on examine le comportement différent des fonctions d'onde de H₃ et de H₂. Une base plus étendue serait nécessaire.

     

不对称方酸染料的电子结构与光导性的从头算研究

用量子化学从头算法,在RHF/6-31G(d,p)水平上优化了八种不对称方酸染料的分子构型,并对它们的分子内电荷转移程度与暗衰值,光敏值和最大吸收波长的定量关系进行研究,发现不对称方酸染料的分子内电荷转移性质,是影响不对称方酸染料光导性和最大吸收波长的重要因素。     

Ab initio study of the reaction of H2 with an AuPt3 cluster

The study of the interaction of a pyramidal tetramer of AuPt3 with H2 is carried out by means of Hartree-Fock self-consistent field (SCF) calculations using relativistic effective core potentials and multiconfigurational SCF plus multireference variational and perturbational on second-order Moller-Plesset configuration interaction calculations. The AuPt3-H2 interaction was carried out in C(s) symmetry. The three lowest electronic states X 2A", A 2A', and a 4A' of the bare cluster were considered in order to study this interaction. The AuPt3+H2 reaction by a Pt vertex shows that AuPt3 cluster in the three lowest-lying electronic states can spontaneously capture and dissociate the H2 molecule. While, by the AuPt2 face side, the AuPt3 cluster only in the A 2A' electronic state can capture and dissociate the H2 molecule after surmounting a small energy barrier. For the Au vertex, this cluster in the three electronic states can also spontaneously capture and dissociate the H2 molecule. On the other hand, by the Pt3 face side, the AuPt3 cluster is able to capture and dissociate the H2 molecule after surmounting energy barriers, where the AuPt3 (X 2A" and 4A'-H2 adsorption are slightly activated.