Rigid molecular tripod with an adamantane framework and thiol legs. Synthesis and observation of an ordered monolayer on Au111

Tripod-shaped trithiols 1-3, containing CH2SH groups at the three bridgehead positions of the adamantane framework and a halogen-containing group [Br (1), p-BrC6H4 (2), or p-IC6H4 (3)] at the fourth bridgehead, were synthesized, and self-assembled monolayers (SAMs) were prepared on atomically flat Au111 surfaces. The three-point chemisorption of these tripods was confirmed by polarization modulation infrared reflection absorption spectroscopy, which showed the absence of a S-H stretching band. Scanning tunneling microscopy of the SAM of 1 exhibited a hexagonal arrangement of the adsorbed molecule with a lattice constant of 8.7 angstroms. A unidirectionally oriented, head-to-tail array of 1, which allows the close approach of neighboring molecules, is proposed as a reasonable model of the two-dimensional crystal, where the adsorbed sulfur atoms form a quasi-(radical3 x radical3)R30 degrees lattice. The charge of the electrochemical reductive desorption of the SAM of 1 was in good agreement with the expected surface coverage, while the SAMs of 2 and 3 showed somewhat less (ca. 70%) charge. The large negative reduction peak potentials, observed for the SAM of 1, are taken to indicate a tight anchoring of this tripod by three sulfur atoms.     

Hierarchical chiral framework based on a rigid adamantane tripod on Au(111)

We have investigated the tripod-shaped bromo adamantane trithiol (BATT) molecule on Au(111) using scanning tunneling microscopy (STM) at 4.7 K. Adsorption of BATT leads to formation of highly ordered self-assembled monolayers (SAMs) with three-point contacts on Au(111). The structure of these SAMs has been found to have a two-tiered hierarchical chiral organization. The self-assembly of achiral monomers produces chiral trimers, which then act as the building blocks for chiral hexagonal supermolecules. SAMs begin to form from the racemic mixture of assembled molecules in ribbon-shaped islands, followed by the transformation to enantiomeric domains when SAM layers develop two-dimensionally across hcp domains. Such a chiral phase transition at the two-dimensional domain can arise from a subtle balance between molecule-substrate and intermolecular interactions. Two structural factors, the S atom (stabilization) and the methylene groups (chirality) located just above the S atom, induce the chiral ordering of BATT on Au(111).     

The nature of alkanethiol self-assembled monolayer adsorption on sputtered gold substrates

A detailed study of the self-assembly and coverage by 1-nonanethiol of sputtered Au surfaces using molecular resolution atomic force microscopy (AFM) and scanning tunneling microscopy (STM) is presented. The monolayer self-assembles on a smooth Au surface composed predominantly of [111] oriented grains. The domains of the alkanethiol monolayer are observed with sizes typically of 5-25 nm, and multiple molecular domains can exist within one Au grain. STM imaging shows that the (4 x 2) superlattice structure is observed as a (3 x 2) structure when imaged under noncontact AFM conditions. The 1-nonanethiol molecules reside in the threefold hollow sites of the Au[111] lattice and aligned along its [112] lattice vectors. The self-assembled monolayer (SAM) contains many nonuniformities such as pinholes, domain boundaries, and monatomic depressions which are present in the Au surface prior to SAM adsorption. The detailed observations demonstrate limitations to the application of 1-nonanethiol as a resist in atomic nanolithography experiments to feature sizes of approximately 20 nm.     

Electrochemical metal deposition on top of an organic monolayer

Electrochemical deposition of metals (platinum or gold) only on top of an organothiolate, 1,4-benzenedimethanethiol (BDMT) or hexanedithiol (HDT), self-assembled monolayer (SAM) on a Au(111) substrate was achieved by electrochemical reduction of PtCl(4)(2-) or AuCl(4)(-) ion, which was preadsorbed on one free thiol end group of the dithiol SAM formed on a Au surface, in a metal-ion-free sulfuric acid solution at potentials more negative than the reduction potential of the metal ion. Angle-resolved X-ray photoelectron spectroscopy (AR-XPS) measurement after the reduction of preadsorbed PtCl(4)(2-) ion on BDMT/Au(111) electrode showed the presence of Pt not underneath but on top of the BDMT SAM. After a negative potential scan of the Pt/BDMT/Au(111) electrode to -1.30 V in 0.1 M KOH solution, a typical cyclic voltammogram of a clean Au(111) electrode was obtained, showing that the BDMT SAM with a Pt layer was reductively desorbed. These results proved that a Pt-BDMT SAM-Au substrate sandwich structure without a short circuit between the two metals was successfully constructed by this technique. Furthermore, a decanethiol (DT) monolayer was constructed on a Au layer, which was formed by the reduction of preadsorbed AuCl(4)(-) ion on HDT/Au(111) electrode. The formation of DT/Au/HDT/Au(111) structure was confirmed as two cathodic peaks corresponding to reductive desorption of DT from Au on top of the HDT/Au(111) at -0.97 V and that of Au/ HDT from Au(111) at -1.12 V were observed when potential was scanned negatively to -1.35 V.     

Assembly dynamics and detailed structure of 1-propanethiol monolayers on Au(111) surfaces observed real time by in situ STM

1-Propanethiol is chosen as a model alkanethiol to probe detailed mechanisms of the self-assembled monolayer (SAM) formation at aqueous/Au(111) interfaces. The assembly processes, including initial physi- and chemisorption, pit formation, and domain growth, were recorded into movies in real-time with high resolution by in situ scanning tunneling microscopy (STM) under potential control. Two major adsorption steps were disclosed in the propanethiol SAM formation. The first step involves weak interactions accompanied by the lift of the Au(111) surface reconstruction, which depends reversibly on the electrochemical potentials. The second step is chemisorption to form a dense monolayer, accompanied by formation of pits as well as structural changes in the terrace edges. Pits emerged at the stage of the reconstruction lift and increased to a maximum surface coverage of 4.0 +/- 0.4% at the completion of the SAM formation. Well-defined triangular pits in the SAM were found on the large terraces (more than 300 nm wide), whereas few and small pinholes appeared at the terrace edge areas. Smooth edges were converted into saw-like structural features during the SAM formation, primarily along the Au(111) atomic rows. These observations suggest that shrinking and rearrangement of gold atoms are responsible for both formation of the pits and the shape changes of the terrace edges. STM images disclose a (2 square root 3 x 3)R30 degrees periodic lattice within the ordered domains. Along with electrochemical measurements, each lattice unit is assigned to contain four propanethiol molecules exhibiting different electronic contrasts, which might originate in different surface orientations of the adsorbed molecules.     

Time-dependent organization and wettability of decanethiol self-assembled monolayer on Au(111) investigated with STM

A detailed study on the time-dependent organization of a decanethiol self-assembled monolayer (SAM) at a designed solution concentration onto a Au(111) surface has been performed with scanning tunneling microscopy (STM). The SAMs were prepared by immersing Au(111) into an ethanol solution containing 1 microM decanethiol with different immersion times. STM images revealed the formation process and adlayer structure of the SAMs. It was found that the molecules self-organized into adlayers from random separation to a well-defined structure. From 10 s, small domains with ordered molecular organization appeared, although random molecules could be observed on Au(111) at the very initial stage. At 30 s, the SAM consisted of uniform short stripes. Each stripe consisted of sets of decanethiol mainly containing eight molecules. With the immersion time increasing, the length of the stripes increased. At 5 min, the alkyl chains overlapped each other between the adjacent stripes, indicating the start of a stacked process. After immersing Au(111) in decanethiol solution for 3 days, a densely packed adlayer with a (radical 3 x radical 3)R30 degrees structure was observed. The formation process and structure of decanethiol SAMs are well related to sample preparation conditions. The wettability of the decanethiolate SAM-modified Au(111) surface was also investigated.     

Size dependent lattice constant change of thiol self-assembled monolayer modified Au nanoclusters studied by grazing incidence x-ray diffraction

Size and lattice constant of thiol self-assembled monolayer (SAM)-modified gold nanoclusters (GNCs) assembled on Au(111) surfaces after each electrochemical treatment were investigated using grazing incidence x-ray diffraction (GIXRD). When the potential was swept between 0 and 1.3 V (vs. Ag/AgCl), the size and lattice constant of GNCs slightly decreased due to the oxidative desorption of the SAMs. As the number of potential cycles increased, the size of GNCs started to increase due to the aggregation, while the lattice constant continued to decrease due to further desorption of the SAMs from the GNCs. After most of the SAMs were removed from the GNCs, the size and lattice constant monotonically increased with the number of potential cycles. The size dependent lattice constant change was observed when GNCs were smaller than ~ 35 Å.     

The dynamics of noble metal atom penetration through methoxy-terminated alkanethiolate monolayers

We have studied the interaction of vapor-deposited Al, Cu, Ag, and Au atoms on a methoxy-terminated self-assembled monolayer (SAM) of HS(CH(2))(16)OCH(3) on polycrystalline Au[111]. Time-of-flight secondary ion mass spectrometry, infrared reflection spectroscopy, and X-ray photoelectron spectroscopy measurements at increasing coverages of metal show that for Cu and Ag deposition at all coverages the metal atoms continuously partition into competitive pathways: penetration through the SAM to the S/substrate interface and solvation-like interaction with the -OCH(3) terminal groups. Deposited Au atoms, however, undergo only continuous penetration, even at high coverages, leaving the SAM "floating" on the Au surface. These results contrast with earlier investigations of Al deposition on a methyl-terminated SAM where metal atom penetration to the Au/S interface ceases abruptly after a approximately 1:1 Al/Au layer has been attained. These observations are interpreted in terms of a thermally activated penetration mechanism involving dynamic formation of diffusion channels in the SAM via hopping of alkanethiolate-metal (RSM-) moieties across the surface. Using supporting quantum chemical calculations, we rationalized the results in terms of the relative heights of the hopping barriers, RSAl > RSAg, RSCu > RSAu, and the magnitudes of the metal-OCH(3) solvation energies.     

Polarized near-edge x-ray-absorption fine structure spectroscopy of C60-functionalized 11-amino-1-undecane thiol self-assembled monolayer: molecular orientation and evidence for C60 aggregation

Near-edge x-ray-absorption fine structure (NEXAFS) spectroscopy was adopted to probe the unoccupied electronic states of C60 anchored onto an organized assembly of 11-amino-1-undecane thiol on Au(111). The polarization dependence of the intensity of pi* resonance associated with C60 pi network revealed the self-assembled monolayer (SAM) system to be oriented with an average molecular tilt angle of 57 degrees with respect to the surface normal. Invoking the absence of solid-state band dispersion effects and in comparison to solid C60 and /or 1-ML C60/Au(111), the electronic structure of the resulting assembly was found dominated by spectral position shift and linewidth and intensity changes of the lowest unoccupied molecular orbital (LUMO), LUMO+1, and LUMO+2 orbitals. The latter implied hybridization between N Pz of -NH2 group of thiolate SAM and pi levels of C60, resulting in a nucleophilic addition with a change in the symmetry of C60 from Ih to C1 in the SAM. Occurrence of a new feature at 285.3 eV in the NEXAFS spectrum, assigned previously to pi* graphitic LUMO, signified the formation of aggregated clusters, (C60)n of C60 monomer. Low tunneling current scanning tunneling microscopy confirmed them to be spherical and stable aggregates with n approximately 5.     

Effect of adlayer structure on the host-guest recognition between calcium and crown-ether-substituted phthalocyanine arrays on Au single-crystal surfaces.

Adlayers of 15-crown-5-ether-substituted cobalt(II) phthalocyanine (CoCRPc) were prepared by immersion of either Au(111) or Au(100) substrate into benzene-ethanol (9:1 v/v) mixed solutions containing CoCRPc. In situ STM imaging was carried out after transferring the CoCRPc-modified Au crystals into aqueous HClO(4) solution. The packing arrangement of the CoCRPc array on Au(111) was determined to be p(8 x 4 radical 3R - 30 degrees ), and the internal structure was clearly observed by high-resolution STM. Two adlayer structures of CoCRPc, (8 x 9) and (4 radical 5 x 4 radical 5)R26.7 degrees, were found on the Au(100)-(1 x 1) terrace. In the presence of 1 mM Ca(2+), two Ca(2+) ions were trapped in two diagonally located 15-crown-5-ether moieties of each CoCRPc molecule on Au(111), whereas encapsulation of Ca(2+) ions was not seen in the CoCRPc arrays on the Au(100)-(1 x 1) surface. The present study demonstrates that the relationship between crown moieties of CRPc and the underlying Au lattice is important in the trapping of Ca(2+) ions in crown rings.     

An STM study on nonionic fluorosurfactant zonyl FSN self-assembly on Au(111): large domains, few defects, and good stability

Nonionic Fluorosurfactant Zonyl FSN self-assembly on Au(111) is investigated with scanning tunneling microscopy under ambient conditions. STM reveals that the FSN forms SAMs on Au(l11) with very large domain size and almost no defects. A (mean square root of 3 x mean square root of 3)R3 degree arrangement of the FSN SAM on Au(111) is observed. The SAMs show excellent chemical stability and last for at least a month in atmospheric conditions. The structure and stability of the FSN SAMs are compared with those of alkanethiols SAMs. It is expected that FSN may serve as a new kind of molecule to form SAMs for surface modification, which would benefit wider applications for various purposes.     

Striped phase of mercaptoalkylferrocenes on Au(111) with a potential for nanoscale surface patterning

The molecular structure of submonolayer-coverage phases of 3-(thioacetyl)-propanoylferrocene and 5-ferrocenylpentanethiol in mixed layers with alkanethiols on Au(111) was resolved by scanning tunneling microscopy. The ferrocenes formed a striped surface phase, similar to the lying-down structures of alkanethiols, resulting in equally spaced rows of the ferrocene moieties. The obtained nanoscale lattice of functional groups on the surface offers an interesting potential for the patterning of small, periodic structures with precise distance control via a hydrocarbon spacer.     

Theoretical study of the structure of self-assembled monolayers of short alkylthiolates on Au(111) and Ag(111): the role of induced substrate reconstruction and chain-chain interactions

We compare the stability of various structures of high coverage self-assembled monolayers (SAMs) of short alkylthiolates, S(CH(2))(n-1)CH(3) (= C(n)), on Ag(111) and Au(111). We employ: (i) the ab initio thermodynamics approach based on density functional theory (DFT) calculations, to compare the stability of SAMs of C(1) (with coverages Θ = 3/7 and 1/3) on both substrates, and (ii) a set of pairwise interatomic potentials derived from second-order M?ller-Plesset (MP2) perturbation theory calculations, to estimate the role of chain-chain (Ch-Ch) interactions in the structure and stability of SAMs of longer chain alkylthiolates. For C(1)/Ag(111) (C(1)/Au(111)) the SAM with Θ = 3/7 is more (less) stable than for Θ = 1/3 in a wide range of temperatures and pressures in line with experiments. In addition, for the molecular densities of SAMs corresponding to Θ = 3/7 and 1/3, the MP2-based Ch-Ch interaction potential also predicts the different chain orientations observed experimentally in SAMs of alkylthiolates on Ag(111) and Au(111). Thus, for short length alkylthiolates, a simple model based on first principles calculations that separately accounts for molecule-surface (M-S) and Ch-Ch interactions succeeds in predicting the main structural differences between the full coverage SAMs usually observed experimentally on Ag(111) and Au(111).     

氢和硫原子在Pd、Au和Cu及PdAu、PdCu合金(111)表面吸附的密度泛函研究

用密度泛函理论研究了氢和硫原子在金属Pd、Au、Cu以及合金PdM3、Pd2M2 和Pd3M(111)表面的吸附(M=Au, Cu), 得到了覆盖率为0.25时最稳定的吸附位、结合能以及吸附前后表面的驰豫情况. 结果表明, 氢和硫均与Pd形成最稳定的吸附, Cu次之, Au的吸附最弱, 其在三种纯金属(111)表面的最稳定吸附位均为fcc位. 由于PdAu合金具有较大的晶格常数, Pd3Au 合金吸附氢的结合能甚至较纯Pd更大, 除此之外, 氢和硫在PdM合金表面的吸附基本随M组分的增加而减弱, 而最稳定的吸附位随金属种类和组成变化而变化. 根据计算得到的吸附结合能, 发现与PdCu合金相比, PdAu合金在Au含量较低(约25%, 摩尔分数)时, 氢和硫吸附的结合能下降较慢, 而Au含量较高(跃50%)时, 结合能迅速下降, 这表明含金量为25%-50%的PdAu合金有可能在保持相近透氢性能的同时, 比PdCu合金具有更好的抗硫毒性.     

Delocalized electron resonance at the alkanethiolate self-assembled monolayer/Au(111) interface

We probe the electronic structure of alkanethiolate self-assembled monolayers (SAMs) on Au(111) using two-photon photoemission spectroscopy. We observe a dispersive unoccupied resonance close to the vacuum level with a lifetime shorter than 30 fs. The short lifetime and the insensitivity of the energy level and dispersion to molecular length (and thus layer thickness) suggest that the probability density of the electron wave function is concentrated inside the molecular layer close to the SAM/Au interface. Such an interfacial resonance results from the image like potential at the SAM/Au interface.     

The blocking and structural properties of a Schiff base self-assembled monolayer on the surface of Au(111)

Electrochemistry and in situ electrochemical scanning tunneling microscopy (STM) were used to study the blocking and structural properties of Shiff base V-ape-V self-assembled monolayers (SAMs) on the surface of Au(111) in perchloric acid solution. The complex-plane impedance plots for the SAM covered Au(111) electrodes, with the redox couple of Fe(CN)₆^4–/3– present in solution, exhibit arc shapes, revealing that the electrochemical kinetics were controlled by the electron-transfer step. For bare Au(111), the electrode process was mass transport limited. The molecules adsorb on Au(111) with a flat-lying orientation and form a long-range well-defined adlayer. A new structure of was observed in the double-layer potential region. A structural model is proposed to interpret the molecular registry with Au(111) substrate.     

Highly ordered C60 monolayer self-assembled by using an iodine template on an Au(111) surface in solution

An iodine-modified Au(111) surface, (I/Au(111)), was used as a substrate to prepare a C 60 adlayer by self-organization in a benzene solution. A highly ordered C 60 adlayer was successfully prepared due to the moderate C 60-I/Au(111) interaction. Two lattice structures, (2 square root 3 x 2 square root 3) R30 degrees and p(2 x 2), were imaged for this C 60 adlayer. For the first structure, a featureless ball-like molecular shape was imaged, ascribed to the molecular rotation resulting from a symmetrical location between C 60 and iodine atoms. For the p(2 x 2) structure, the asymmetrical location of C 60 with respect to the iodine atoms freezes the C 60 molecules on the substrate, leading to a clear image of intramolecular structure. The intermediate iodine atoms in the C 60/I/Au(111) adlayer can be desorbed by electrochemically reduction without significantly affecting the ordering of the C 60 adlayer. However, the internal pattern of C 60 disappears in the absence of iodine.     

噻吩在M(111)(M=Pd,Pt, Au)表面的吸附

采用密度泛函理论(DFT), 选取DMol³程序模块, 对噻吩在M(111) (M=Pd, Pt, Au)表面上的吸附行为进行了探讨. 通过对噻吩在不同底物金属上的吸附能、吸附构型、Mulliken 电荷布居、差分电荷密度以及态密度的分析发现, 噻吩在Pd(111)面上的吸附能最大, Pt(111)面次之, Au(111)面最小. 吸附后, 噻吩在Au(111)面上的构型几乎保持不变, 最终通过S端倾斜吸附于top 位; 噻吩在Pd(111)及Pt(111)面上发生了折叠与变形, 环中氢原子向上翘起, 最终通过环平面平行吸附于hollow 位. 此外, 噻吩环吸附后芳香性遭到了破坏, 环中碳原子发生sp³杂化, 同时电子逐渐由噻吩向M(111)面发生转移, M(111)面上的部分电子也反馈给了噻吩环中的空轨道, 这种协同作用最终导致了噻吩分子稳定吸附于M(111)面.     

A spectroscopic study of self-assembled monolayer of porphyrin-functionalized oligo(phenyleneethynylene)s on gold: the influence of the anchor moiety

Porphyrin-functionalized oligo(phenyleneethynylene)s (OPE) are promising molecules for molecular electronics applications. Three such molecules () with the common structure P-OPE-AG (P and AG are a porphyrin and anchor group, respectively) and different anchor groups, viz. an acetyl protected thiol, -S-COCH(3) (), an acetyl protected thiol with methylene linker, -CH(2)-S-COCH(3) (), and a trimethylsilylethynyl group, -C[triple bond, length as m-dash]C-Si(CH(3))(3) () have been synthesized and the corresponding self-assembled monolayers (SAMs) on Au(111) substrates have been prepared. The integrity and structural properties of these films were studied by X-ray photoelectron spectroscopy and near-edge X-ray absorption fine structure spectroscopy. The results suggest that the films formed from have a high orientational order with an almost upright orientation and dense packing of the molecular constituents, i.e. represent a high quality SAM. In contrast, molecule formed disordered molecular layers on Au, even though the molecule-surface bonding (thiolate) is the same as in the case of molecule . This suggests that the methylene linker in molecule has a strong impact on the quality of the resulting film, so that a well-ordered SAM cannot be formed. The silane system, , is also able to bind to the gold surface but the resulting SAM has a poor quality, being significantly disordered and/or comprised of strongly inclined molecules. The above results suggest that the nature of the anchor group along with a possible linker is an important parameter which, to a high extent, predetermines the entire quality of OPE-based molecular layers.     

Molecules that mimic Schottky diodes

Self-assembled monolayers of cationic donor-(pi-bridge)-acceptor dyes coupled with anionic donors exhibit asymmetric current-voltage (I-V) characteristics when contacted by Au or PtIr probes. Rectification ratios of 3000 at +/- 1 V are obtained from Au-S-C10H20-A+-pi-D|D-|Au structures in which the cationic moiety is 5-(4-dimethylaminobenzylidene)-5,6,7,8-tetrahydro-isoquinolinium and the counterion is copper phthalocyanine-3,4',4',4'-tetrasulfonate (SAM ). Similar behaviour, with a high rectification ratio of 700-900 at +/- 1 V, is also obtained for the CuPc(SO3-)4 salt of 4-[2-(4-dimethylaminonaphthalen-1-yl)-vinyl]-quinolinium (SAM ). The properties are dependent upon the D-pi-A+ moieties which, for these highly rectifying salts, have sterically locked non-planar structures causing the conjugation to be effectively broken. Its effect on the electrical asymmetry is less spectacular when the cationic species is sterically unhindered: the rectification ratio decreases to 15-70 at +/- 1 V for films of the 4-[2-(4-dimethylaminophenyl)-vinyl]-pyridinium salt (SAM ), which has single-ring substituents on opposite sides of the -CH=CH- bridge and an almost planar D-pi-A+ structure. Rectification ratios from the sterically hindered structures are on a par with electrical asymmetries from metal-insulator-metal (MIM) devices where oxide-induced Schottky barriers dominate the behaviour.