Gas Phase H/D Exchange of Sodiated Amino Acids: Why Do We See Zwitterions?

The gas-phase interaction of sodiated amino acids and sodiated amino acid methyl esters with various deuterium donors is investigated by combining results of H/D exchange reactions with those from density functional theory and molecular dynamics calculations. Discrepancy between experimentally and theoretically obtained structures for sodium cationized amino acids is explained by deuterium donor caused perturbation of the most stable amino acid conformation. Detailed study of H/D exchange mechanism on sodiated amino acids shows that the H/D exchange reaction is preceded by a multistep quasi-isoenergetic transition (perturbation) from a charge solvated to zwitterionic structure in the amino acid. Although the computation refers to the system AlaNa(+) and D(2)O, these mechanisms apply to all amino acids, except those where a functional side-chain group takes part in the perturbation process. The suggested perturbation mechanism applies also for other deuterium donors such as CD(3)OD or even ND(3) and indicates that a single water molecule suffices to convert the sodiated amino acid from charge solvated to zwitterionic form.     

Inclusion Complexes of Ionic Liquids and Cyclodextrins: Are They Formed in the Gas Phase?

The interaction of imidazolium-based ionic liquids with α- and β-cyclodextrins was investigated by electrospray ionization mass spectrometry with variable collision induced dissociation energy and quantum chemical gas-phase calculations. The center-of-mass energy at which 50 % of a precursor ion decomposes (E_cm,1/2) was determined for the isolated [cyclodextrin + cation]⁺ or [cyclodextrin + anion]^– adduct ions of imidazolium-based ionic liquids with different alkyl chain lengths combined with a large set of anions, such as chloride, bromide, bis(trifluoromethylsulfonyl)imide, tetrafluoroborate, hexafluorophosphate, trifluoromethanesulfonate, methanesulfonate, dicyanamide, and hydrogensulfate. Moreover, both symmetric and asymmetric imidazolium cationic cores were evaluated. The relative interaction energies in the adduct ions were interpreted in terms of the influence of cation/anion structures and their inherent properties, such as hydrophobicity and hydrogen bond accepting ability, in the complexation process with the cyclodextrins. The trends observed in the mass spectral data together with quantum-chemical calculations suggest that in the gas phase, cations and anions will preferentially interact with the lower or upper rim of the cyclodextrin, respectively, as opposed to what has been reported in condensed phase where the formation of an inclusion complex between ionic liquid and cyclodextrin is assumed.

Native Biomolecules in the Gas Phase? The Case of Green Fluorescent Protein

Green fluorescent protein (GFP) was ionized by native electrospray ionization and trapped for many seconds in high vacuum, allowing fluorescence emission to be measured as a probe of its biological function, to answer the question whether GFP exists in the native form in the gas phase or not. Although a narrow charge‐state distribution, a collision cross‐section very close to that expected for correctly folded GFP, and a large stability against dissociation all support a near‐native gas‐phase structure, no fluorescence emission was observed. The loss of the native form is attributed to the absence of residual water in the gas phase, which normally stabilizes the para‐hydroxybenzylidene imidazolone chromophore of GFP.     

Synthesis of α-Aminoarylacetic Acids in the Presence of Phase Transfer Catalysts

Inearlierpublications""aone-stepphasetransfercatalyzedreactionforpreparingaaminoarylaceticacidsfromarylaldehydesandchloroform,usingquaternarysaltsorf3CDasphasetransfercatalyst,wasdescribed;Itwasalsoreportedthatsomereactionsundersonicationconditionoftenoccurmorerapidlyandeasily'.Wenowfindthatthisreactioncanbeadvantageouslyrealizedbyphasetransfercatalysisundersonication.Optimumreactionconditionsweredeterminedwithbenzaldehyde.Inthepresenceoflithiumchloride,theyieldnoticeablydecreases(seeTablel)…     

Can Conventional Bases and Unsaturated Hydrocarbons Be Converted into Gas‐Phase Superacids That Are Stronger than Most of the Known Oxyacids? The Role of Beryllium Bonds

The association of BeX₂ (X: H, F, Cl) derivatives with azoles leads to a dramatic increase of their intrinsic acidity. Hence, whereas 1H‐tetrazole can be considered as a typical N base in the gas phase, the complex 1H‐tetrazole–BeCl₂ is predicted to be, through the use of high‐level G4 ab initio calculations, a nitrogen acid stronger than perchloric acid. This acidity enhancement is due to a more favorable stabilization of the deprotonated species after the beryllium bond is formed, because the deprotonated anion is a much better electron donor than the neutral species. Consequently, this is a general phenomenon that should be observed for any Lewis base, including those in which the basic site is a hydroxy group, an amino group, a carbonyl group, an aromatic N atom, a second‐row atom, or the π system of unsaturated hydrocarbons. The consequence is that typical bases like aniline or formamide lead to BeX₂ complexes that are stronger acids than phosphoric or chloric acids. Similarly, water, methanol, and SH₂ become stronger acids than sulfuric acid, pyridine becomes a C acid almost as strong as acetic acid, and unsaturated hydrocarbons such as ethylene and acetylene become acids as strong as nitric and sulfuric acids, respectively.     

ChemInform Abstract: CrF2- 6: A Stable Dianion in the Gas Phase?

ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a “Full Text” option. The original article is trackable via the “References” option.     

ChemInform Abstract: Are the Compounds InH3 and TlH3 Stable Gas Phase or Solid State Species?

ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a “Full Text” option. The original article is trackable via the “References” option.     

Why Does Pivalaldehyde (Trimethylacetaldehyde) Unexpectedly Seem More Basic Than 1‐Adamantanecarbaldehyde in the Gas Phase? FT‐ICR and High‐Level Ab Initio Studies

Fourier transform ion cyclotron resonance spectroscopy (FT ICR) techniques, including collision-induced dissociation (CID) methodology, were applied to the study of the gas-phase protonation of pivalaldehyde (1) and 1-adamantanecarbaldehyde (2). A new synthetic method for 2 was developed. The experiments, together with a thorough computational study involving ab initio and density functional theory (DFT) calculations of high level, conclusively show that upon monoprotonation in the gas phase, compound 1 yields monoprotonated methyl isopropyl ketone 3. The mechanism of this gas-phase acid-catalyzed isomerization is different from that reported by Olah and Suryah Prakash for the reaction in solution. In the latter case, isomerization takes place through the diprotonation of 1.     

Theoretical Study on the Reaction Mechanism of SiCl_4 with H in the Gas Phase

1 INTRODUCTION Semiconductor silicon materials are vital for mi- croelectronic and information industry. Silicon has many advantages, for example, rich resource, out- standing quality and sophisticated processing tech- nology. So it has been widely used in semiconduc- tor industry. One of the key techniques of mo- dern microelectronic industry is epitaxial growth of single crystal thin film on single crystal silicon and its ba- cking materials. In the chemical vapour deposition of Si, g…     

Molecular Frame Photoemission： Probe of the Photoionization Dynamics for Molecules in the Gas Phase

Molecular frame photoemission is a very sensitive probe of the photoionization （PI） dynamics of molecules. This paper reports a comparative study of non-resonant and resonant photoionization of D2 induced by VUV circularly polarized synchrotron radiation at SOLEIL at the level of the molecular frame photoelectron angular distributions （MFPADs）. We use the vector correlation method which combines imaging and time-of-flight resolved electron-ion coincidence techniques, and a generalized formalism for the expression of the Ⅰ（χ, θe, Фe） MFPADs, where χ is the orientation of the molecular axis with respect to the light quantization axis and （θe, Фe） the electron emission direction in the molecular frame. Selected MFPADs for a molecule aligned parallel or perpendicular to linearly polarized light, or perpendicular to the propagation axis of circularly polarized light, are presented for dissociative photoionization （DPI） of D2 at two photon excitation energies, hv=19 eV, where direct PI is the only channel opened, and hv=32.5 eV, i.e. in the region involving resonant excitation of Q1 and Q2 doubly excited state series. We discuss in particular the properties of the circular dichroism characterizing photoemission in the molecular frame for direct and resonant PI. In the latter case, a remarkable behavior is observed which may be attributed to the interference occurring between undistinguishable autoionization decay channels.     

Why Are B ions stable species in peptide spectra?

Protonated amino acids and derivatives RCH(NH₂)C(+O)X · H⁺ (X = OH, NH₂, OCH₃) do not form stable acylium ions on loss of HX, but rather the acylium ion eliminates CO to form the immonium ion RCH = NH ₂ ⁺ . By contrast, protonated dipeptide derivatives H₂NCH(R)C(+O)NHCH(R′)C(+O)X · H⁺ [X = OH, OCH₃, NH₂, NHCH(R″)COOH] form stable B₂ ions by elimination of HX. These B₂ ions fragment on the metastable ion time scale by elimination of CO with substantial kinetic energy release (T _1/2 = 0.3–0.5 eV). Similarly, protonated N-acetyl amino acid derivatives CH₃C(+O)NHCH(R′)C(+O)X · H⁺ [X = OH, OCH₃, NH₂, NHCH(R″)COOH] form stable B ions by loss of HX. These B ions also fragment unimolecularly by loss of CO with T _1/2 values of ～ 0.5 eV. These large kinetic energy releases indicate that a stable configuration of the B ions fragments by way of activation to a reacting configuration that is higher in energy than the products, and some of the fragmentation exothermicity of the final step is partitioned into kinetic energy of the separating fragments. We conclude that the stable configuration is a protonated oxazolone, which is formed by interaction of the developing charge (as HX is lost) with the N-terminus carbonyl group and that the reacting configuration is the acyclic acylium ion. This conclusion is supported by the similar fragmentation behavior of protonated 2-phenyl-5-oxazolone and the B ion derived by loss of H-Gly-OH from protonated C₆H₅C(+O)-Gly-Gly-OH. In addition, ab initio calculations on the simplest B ion, nominally HC(+O)NHCH₂CO⁺, show that the lowest energy structure is the protonated oxazolone. The acyclic acylium isomer is 1.49 eV higher in energy than the protonated oxazolone and 0.88 eV higher in energy than the fragmentation products, HC(+O)N⁺H = CH₂ + CO, which is consistent with the kinetic energy releases measured.     

Synergistic Effect in Special Selectivity Mixed Gas Chromatographic Stationary Phase in the Separation of Aromatic Compounds

ItisgenerallyknownthatadditivityofmixedstationaryphasesinGCcanbeencoun-tered.Ourinvestigationshaveshowntheexistenceofsynergisticeffectintheside-chaincrownetherpolysiloxaneandperethylatedo-CDmixedstationaryphase,'resorcareneandcyclodextrinmixedstationaryphase,'aswellasinthemixedstationaryphasecon-sistingofheptakis(2,3,6-tri-o-pentyl)-o-CandAgNO3orT1NO,.'Ininorganicchemis-try,synergisticeffectshavebeenstudiedwidelyinextraction.'Theeffectsalsoexistintheextractionoforganiccompounds'andincapill…     

Are Organic Certified Carrots Richer in Health-Promoting Phenolics and Carotenoids than the Conventionally Grown Ones?

The aim of the present study was to determine the concentrations of polyphenols and carotenoids by means of HPLC/UV-Vis in certified organic and non-organic carrots (Daucus carota L.) of two cultivars (Flacoro and Nantejska). The analyzed carrot root samples contained, on average, 4.29 ± 0.83 mg/100g f.w. of carotenoids (mainly β-carotene) and 9.09 ± 2.97 mg/100g f.w. of polyphenols, including 4.44 ± 1.42 mg/100g f.w. of phenolic acids and 4.65 ± 1.96 mg/100g f.w. of flavonoids. Significant effects of the production system on the carotenoids (total) and β-carotene concentration were found, with higher concentrations of these compounds generally identified in conventionally cultivated roots (4.67 ± 0.88 mg/100g f.w.) vs. organically grown ones (4.08 ± 0.74 mg/100g f.w.). There was a noticeable inter-sample (inter-farm) variation in the concentration of polyphenols in carrot roots. Despite a general trend towards higher concentrations of these compounds in the organic carrots (9.33 ± 3.17 mg/100g f.w.) vs. conventional carrots (8.64 ± 2.58 mg/100g f.w.), and in those of Nantejska (9.60 ± 2.87 mg/100g f.w.) vs. Flacoro (8.46 ± 3.02 mg/100g f.w.) cultivar, no consistent, statistically significant impact of the production system and/or cultivar on the level of these bioactive compounds was identified. More efforts should be encouraged to ensure that organic crops reaching the market consistently contain the expected high levels of health-promoting bioactive compounds, which could be brought through their shelf-life and all processing steps, in order to meet consumers’ expectations and provide the expected health benefits.     

α,β‐Unsaturated and Saturated Derivatives of Be,Mg, and Ca: Are They Carbon or Metal Acids in the Gas Phase?

The gas-phase acidity of R--XH (R=H, CH(3), CH(2)CH(3), CH==CH(2), C[triple chemical bond]CH; X=Be, Mg, Ca) alkaline-earth-metal derivatives has been investigated through the use of high-level CCSD(T) calculations by using a 6-311+G(3df,2p) basis set. BeH(2) is a stronger acid than BH(3) and CH(4) for two concomitant reasons: 1) the dissociation energy of the Be--H bond is smaller than the dissociation energies of the B--H and C--H bonds, and 2) the electron affinity of BeH(.) is larger in absolute value than those of BH(2) (.) and CH(3) (.). The acidity also increases on going from BeH(2) to MgH(2) due to these two same factors. Quite importantly, despite the fact that the X--H bonds in the R--XH (X=Mg, Ca) derivatives exhibit the expected X(delta+)--H(delta-) polarity, they behave as metal acids in the gas phase and only Be derivatives behave as carbon acids in the gas phase. The ethylberyllium hydride exhibits an unexpected high acidity compared with the methyl derivative because deprotonation of the system is accompanied by a cyclization that stabilizes the anion. Similarly to that found for derivatives that contain heteroatoms from groups 14, 15, and 16, the unsaturated compounds are stronger acids than the saturated counterparts, with the only exception of the Ca-vinyl derivative. Most importantly, among ethyl, vinyl, and ethynyl derivatives containing a heteroatom of the main group of the Periodic Table, those containing Be, Mg, and Ca are among the strongest gas-phase acids.     

Why does cyclopropene have the acidity of an acetylene but the bond energy of methane?

The gas-phase acidity of 3,3-dimethylcyclopropene (1) has been measured by bracketing and equilibrium techniques. Consistent with simple hybridization arguments, our value (deltaH degrees (acid) = 382.7 +/- 1.3 kcal mol(-)(1)) is indistinguishable from that for methylacetylene (i.e., deltadeltaH degrees (acid)(1 - CH(3)Ctbd1;CH) = 1.6 +/- 2.5 kcal mol(-)(1)). The electron affinity of 3,3-dimethylcyclopropenyl radical (1r) was also determined (EA = 37.6 +/- 3.5 kcal mol(-)(1)), and these quantities were combined in a thermodynamic cycle to afford the homolytic C-H bond dissociation energy. To our surprise, the latter quantity (107 +/- 4 kcal mol(-)(1)) is the same as that for methane, which cannot be explained in terms of the s-character in the C-H bonds. An orbital explanation (delocalization) is proposed to account for the extra stability of 1r. All of the results are supplemented with G3 and B3LYP computations, and both approaches are in good accord with the experimental values. We also note that for simple hydrocarbons which give localized carbanions upon deprotonation there is an apparent linear correlation between any two of the following three quantities: deltaH degrees (acid), BDE, and EA. This observation could be of considerable value in many diverse areas of chemistry.     

Theoretical Study on the Mechanism of VO2^＋ ＋ H2 Reaction in the Gas Phase

The mechanism of VO2+ + H2 reaction in the gas phase was investigated by using density functional theory (DFT) at the CCSD//B3LYP/6-311G(2d, p) level. According to our calculation results, the different reaction mechanisms were found for the singlet and triplet potential energy surfaces (PESs). Especially, the crossing points (CPs) among different PESs were located by means of the intrinsic reaction coordinate (IRC) approach presented by Yoshizawa et al., and the structures and energies of the corresponding minimum energy crossing points (MECPs) were obtained by the mathematical algorithm proposed by Harvey et al. Finally, the frontier molecular orbital (FMO) interaction analyses about MECP1 and MECP2 were used to prove our calculation results.     

Are stone-wales defect sites always more reactive than perfect sites in the sidewalls of single-wall carbon nanotubes?

Density functional computations show, in contrast to general assumptions, that the reactions at the 7-7 ring fusions of Stone-Wales defects in the sidewalls of armchair (5,5) single-wall carbon nanotubes are much less exothermic than reactions at perfect sites. In addition, the peripheral 5-6 and 6-7 ring fusions of the defect are much more reactive.