A Panel of Cytochrome P450 BM3 Variants to Produce Drug Metabolites and Diversify Lead Compounds

Herein we demonstrate that a small panel of variants of cytochrome P450 BM3 from Bacillus megaterium covers the breadth of reactivity of human P450s by producing 12 of 13 mammalian metabolites for two marketed drugs, verapamil and astemizole, and one research compound. The most active enzymes support preparation of individual metabolites for preclinical bioactivity and toxicology evaluations. Underscoring their potential utility in drug lead diversification, engineered P450 BM3 variants also produce novel metabolites by catalyzing reactions at carbon centers beyond those targeted by animal and human P450s. Production of a specific metabolite can be improved by directed evolution of the enzyme catalyst. Some variants are more active on the more hydrophobic parent drug than on its metabolites, which limits production of multiply‐hydroxylated species, a preference that appears to depend on the evolutionary history of the P450 variant.     

A comprehensive theoretical study on the reactions of Sc+ with CnH2n+2 (n=1-3): structure,mechanism, and potential-energy surface

The reactions of Sc(+)((3)D) with methane, ethane, and propane in the gas phase were studied theoretically by density functional theory. The potential energy surfaces corresponding to [Sc, C(n), H(2n+2)](+) (n=1-3) were examined in detail at the B3LYP/6-311++G(3df, 3pd)//B3LYP/6-311+G(d,p) level of theory. The performance of this theoretical method was calibrated with respect to the available thermochemical data. Calculations indicated that the reactions of Sc(+) with alkanes are multichannel processes which involve two general mechanisms: an addition-elimination mechanism, which is in good agreement with the general mechanism proposed from earlier experiments, and a concerted mechanism, which is presented for the first time in this work. The addition-elimination reactions are favorable at low energy, and the concerted reactions could be alternative pathways at high energy. In most cases, the energetic bottleneck in the addition-elimination mechanism is the initial C--C or C--H activation. The loss of CH(4) and/or C(2)H(6) from Sc(+)+C(n)H(2n+2) (n=2, 3) can proceed along both the initial C--C activation branch and the Cbond;H activation branch. The loss of H(2) from Sc(+)+C(n)H(2n+2) (n=2, 3) can proceed not only by 1,2-H(2) and/or 1,3-H(2) elimination, but also by 1,1-H(2) elimination. The reactivity of Sc(+) with alkanes is compared with those reported earlier for the reactions of the late first-row transition-metal ions with alkanes.     

A two-state computational investigation of methane C--H and ethane C--C oxidative addition to [CpM(PH3)]n+ (M = Co, Rh, Ir; n = 0, 1)

Reductive elimination of methane from methyl hydride half-sandwich phosphane complexes of the Group 9 metals has been investigated by DFT calculations on the model system [CpM(PH(3))(CH(3))(H)] (M = Co, Rh, Ir). For each metal, the unsaturated product has a triplet ground state; thus, spin crossover occurs during the reaction. All relevant stationary points on the two potential energy surfaces (PES) and the minimum energy crossing point (MECP) were optimized. Spin crossover occurs very near the sigma-CH(4) complex local minimum for the Co system, whereas the heavier Rh and Ir systems remain in the singlet state until the CH(4) molecule is almost completely expelled from the metal coordination sphere. No local sigma-CH(4) minimum was found for the Ir system. The energetic profiles agree with the nonexistence of the Co(III) methyl hydride complex and with the greater thermal stability of the Ir complex relative to the Rh complex. Reductive elimination of methane from the related oxidized complexes [CpM(PH(3))(CH(3))(H)](+) (M = Rh, Ir) proceeds entirely on the spin doublet PES, because the 15-electron [CpM(PH(3))](+) products have a doublet ground state. This process is thermodynamically favored by about 25 kcal mol(-1) relative to the corresponding neutral system. It is essentially barrierless for the Rh system and has a relatively small barrier (ca. 7.5 kcal mol(-1)) for the Ir system. In both cases, the reaction involves a sigma-CH(4) intermediate. Reductive elimination of ethane from [CpM(PH(3))(CH(3))(2)](+) (M = Rh, Ir) shows a similar thermodynamic profile, but is kinetically quite different from methane elimination from [CpM(PH(3))(CH(3))(H)](+): the reductive elimination barrier is much greater and does not involve a sigma-complex intermediate. The large difference in the calculated activation barriers (ca. 12.0 and ca. 30.5 kcal mol(-1) for the Rh and Ir systems, respectively) agrees with the experimental observation, for related systems, of oxidatively induced ethane elimination when M = Rh, whereas the related Ir systems prefer to decompose by alternative pathways.     

Synthese und Kristallstruktur der Spiro-Verbindung [(i-Pr)2P(S)NSiMe3]2SnCl2

Synthesis and Crystal Structure of the Spirocycle [(i-Pr)₂P(S)NSiMe₃]₂SnCl₂ The reaction of (i-Pr)₂P(S)N(SiMe₃)₂ ( 1 ) with SnCl₄ in 2:1 ratio yields under elimination of ClSiMe₃ the four-membered spirocycle [(i-Pr)₂P(S)NSiMe₃]₂SnCl₂ ( 2 ). The molecular structure of 2 was investigated by an X-ray structure analysis. Compound 2 crystallises in the monoclinic space group P2₁, Z = 2, a = 938.1(1), b = 1 424.1(2), c = 1 207.2(1) pm, β = 110.59(1)°, R = 2.05% for 4 102 reflexions. Compound 2 is a spirocycle with two Sn? N? P? S-rings joined at tin. The two rings are in cis-position.     

Methylene transfer from SnMe groups mediated by a rhodium(I) pincer complex: Sn-C, C-C, and C-H bond activation

The PCP-Rh(I) complex 1a based on the [1,3-phenylenebis(methylene)]bis(diisopropylphosphine) ligand reacts with [diazo(phenyl)methyl]trimethylstannane (2) at room temperature to give novel pincer-type phenyl(dimethylstannyl)methylene]hydrazinato complex 3a. The reaction sequence involves a unique combination of Sn-C bond cleavage, C-C bond formation, C-H activation and intramolecular deprotonation of a rhodium hydride intermediate, which results in methylene transfer from an SnMe group to the pincer system and PCP-chelate expansion. A methylene-transfer reaction was also demonstrated with tetramethyltin as the methylene source in the presence of KOC(CH(3))(3) at room temperature. The resulting unstable "chelate-expanded" Rh(I) complex [(C(10)H(5)(CH(2)PiPr(2))(2))(CH(2))Rh(L)] (L=N(2), THF; 4a) was isolated as its carbonyl derivative 5a. Heating 4a in benzene yielded an equimolar amount of toluene and 1a, which demonstrates the ability of the Rh(I) pincer complex to extract a methylene group from an unactivated alkyl tin substrate and transfer it, via C-C followed by C-H activation, to an arene. Use of fluorobenzene resulted in formation of fluorotoluene. Catalytic methylene-group transfer mediated by 1a was not possible, because of formation of o-xylylene complex 8 under the reaction conditions. Steric parameters play a decisive role in the reactivity with tin compounds; while iPrP derivative 1 a underwent facile reactions, tBuP complex 1b was inert.     

Functionalization of Organic Molecules by Transition‐Metal‐Catalyzed C(sp3)?H Activation

Transition‐metal‐catalyzed C? H activation has recently emerged as a powerful tool for the functionalization of organic molecules. While many efforts have focused on the functionalization of arenes and heteroarenes by this strategy in the past two decades, much less research has been devoted to the activation of non‐acidic C? H bonds of alkyl groups. This Minireview highlights recent work in this area, with a particular emphasis on synthetically useful methods.     

Synthese und Kristallstruktur eines μ-Methylen-μ-hydrido-dialanats [R2Al(μ-CH2)(μ-H)AlR2]− (R = CH(SiMe3)2)

Synthesis and Crystal Structure of a μ-Methylene-μ-hydrido-dialanate [R₂Al(μ-CH₂)(μ-H)AlR₂]^? (R = CH(SiMe₃)₂) tert-Butyl lithium reacts with the recently synthesized methylene bridged dialuminium compound [(Me₃Si)₂CH]₂Al? CH₂? Al[CH(SiMe₃)₂]₂ 2 in the presence of TMEDA under β-elimination; the thereby formed hydride anion is bound in a chelating manner by both unsaturated aluminium atoms forming a 3c–2e–Al? H? Al bond. The crystal structure of the product shows two independent molecules differing only slightly in bond lengths and angles, but significantly in conformation. While one of the Al₂CH heterocycles deviates little from planarity with a rough C₂ symmetry for the whole anion, the other one is folded with an angle of 21.1° and the arrangement of the substituents is best described by C_s symmetry.     

Palladium-catalyzed intramolecular C(sp(3))--H functionalization: catalyst development and synthetic applications

A novel catalytic system, based on a mixture of palladium acetate and tris(5-fluoro-2-methylphenyl)phosphane (F-TOTP), has been designed for the intramolecular C--H functionalization of alkane segments. Among other analogues of tris(2-methylphenyl)phosphane (P(o-tol)(3)), F-TOTP was shown to have the optimal metal-bonding properties for this reaction. This catalytic system operated under milder reaction conditions that allowed the regioselective production of various olefins adjacent to a quaternary benzylic carbon atom, as well as novel bi- and tricyclic molecules. A general mechanism was proposed, with the preferential formation of a six-membered palladium(II) palladacycle after oxidative addition and cyclopalladation. The regioselective C--H functionalization of alkyl groups into olefins was illustrated in the synthesis of the antihypertensive drug verapamil and an analogue. A particularly mild ruthenium-catalyzed direct hydroamidation of the intermediate olefin in this synthesis is also reported.