Peripheral substitution of a near-IR-absorbing soluble phthalocyanine using "click" chemistry

A series of near-IR-absorbing soluble phthalocyanines (Pcs) with eight alkyne moieties as side chains of the chromophore have been synthesized. One of these Pcs has been used as a scaffold for functional group modification using alkyne-azide click chemistry with various azides. This led to a small library of Pcs with photo and thermal crosslinkable, dendritic, and hydrophilic moieties starting from a single Pc molecule. A patterned thin film was fabricated by photocrosslinking one of these Pc derivatives.     

Metal-Coordination-Assisted Folding and Guest Binding in Helical Aromatic Oligoamide Molecular Capsules

The development of foldamer-based receptors is driven by the design of monomers with specific properties. Herein, we introduce a pyridazine-pyridine-pyridazine diacid monomer and its incorporation into helical aromatic oligoamide foldamer containers. This monomer codes for a wide helix diameter and can sequester metal ions on the inner wall of the helix cavity. Crystallographic studies and NMR titrations show that part of the metal coordination sphere remains available and may then promote the binding of a guest within the cavity. In addition to metal coordination, binding of the guest is assisted by cooperative interactions with the helix host, thereby resulting in significant enhancements depending on the foldamer sequence, and in slow guest capture and release on the NMR time scale. In the absence of metal ions, the pyridazine-pyridine-pyridazine monomer promotes an extended conformation of the foldamer that results in aggregation, including the formation of an intertwined duplex.     

Folding‐Induced Modulation of Excited‐State Dynamics in an Oligophenylene–Ethynylene‐Tethered Spiral Perylene Bisimide Aggregate

The excited‐state photophysical behavior of a spiral perylene bisimide (PBI) folda‐octamer ( F8 ) tethered to an oligophenylene–ethynylene scaffold is comprehensively investigated. Solvent‐dependent UV/Vis and fluorescence studies reveal that the degree of folding in this foldamer is extremely sensitive to the solvent, thus giving rise to an extended conformation in CHCl₃ and a folded helical aggregate in methylcyclohexane (MCH). The exciton‐deactivation dynamics are largely governed by the supramolecular structure of F8 . Femtosecond transient absorption (TA) in the near‐infrared region indicates a photoinduced electron‐transfer process from the backbone to the PBI core in the extended conformation, whereas excitation power‐ and polarization‐dependent TA measurements combined with computational modeling showed that excitation energy transfer between the unit PBI chromophores is the major deactivation pathway in the folded counterpart.     

The application of "click chemistry" for the decoration of 2(1H)-pyrazinone scaffold: generation of templates

The "click chemistry" approach has been explored on the 2-(1H)-pyrazinone scaffold for the generation of pharmacologically interesting heterocyclic moieties. Huisgen 1,3-dipolar cycloaddition has been evaluated as the key step for the construction of the 1,2,3-triazole ring at the C-3 position of 2-(1H)-pyrazinones. Two different pathways have been successfully evaluated: (1) via C-C or C-O linkage of the acetylenic part to the C-3 position of the 2-(1H)-pyrazinone scaffold or (2) via azide introduction in the C-3 position. The subsequent application of "click chemistry" resulted in the formation of hitherto unknown skeletons. Microwave irradiation has successfully been applied in different steps of the sequence.     

Synthesis and complexation of multiarmed cycloveratrylene-type ligands: observation of the "boat" and "distorted-cup" conformations of a cyclotetraveratrylene derivative

Investigations of a previously reported ligand, hexakis(2-pyridylmethyl)cyclotricatechylene (1), and a new tetrameric bridging ligand, octakis(2-pyridylmethyl)cyclotetracatechylene (2), the latter constructed on a larger cyclotetraveratrylene (CTTV) scaffold, are described. Variable-temperature NMR studies support a "sofa" conformation for 2, akin to studies on the parent compound. The coordination chemistry of 2 and its smaller trimeric homologue have also been investigated with silver(I), copper(II) and palladium(II) salts. An unexpected chelating mode was observed for 1 in the structure of DMF subset[Pd(3)Cl(6)(1)] x DMF, whereby the palladium cations bridge two veratrole subunits rather than chelating within a single subunit. In the structure of [Ag(4)(2)][Co(C(2)B(9)H(11))(2)](4) x 2.8 CH(3)CN x H(2)O, ligand 2 adopts a "boat" conformation, whereas in [Pd(4)Cl(8)(2)] x 4 H(2)O, (1)H NMR spectroscopic studies and calculations indicate that the ligand is present in a previously unobserved "distorted-cup" conformation. This conformation was calculated to be approximately 90 kJ mol(-1) lower in energy than the alternative "sofa" conformation. Thus, coordination-induced conformational control over CTTV derivatives offers new routes to exploit the host-guest chemistry of these compounds.     

Naphthalene- and anthracene-based aromatic foldamers with iminodicarbonyl linkers: their stabilities and application to a chiral photochromic system using retro [4 + 4] cycloaddition

A circular dichroism (CD) spectral study on chiral aromatic chain imides possessing anthracene and naphthalene moieties with bulky N substituents showed that their helical chirality based on folding remained for a reasonably long time without racemization in solution. Racemization due to conformational equilibration occurred very slowly, requiring over 1 week at ambient temperature. Their CD spectra both in solution and in the solid state gave similar CD signals, suggesting retention of helicity observed in the solid state even after dissolving. As an application of this novel chiral folding of aromatic chain imides, a chiral photochromic system was investigated based on the photo [4 + 4] cycloaddition and its thermal cycloreversion of an anthracene-naphthalene system. The foldamer possessing an anthracene moiety in the center connected with two naphthalene moieties below and above it by iminodicarbonyl linkers was prepared for this purpose. Induced CD was observed for the foldamer with (S)-1-(1-naphthyl)ethyl substituents at the imide nitrogen atoms. Chiral photochromic cycles were monitored by CD spectral measurement.     

Allyl‐Functionalized Dioxynaphthalene[38]Crown‐10 Macrocycles: Synthesis,Self‐Assembly,and Thiol‐ene Functionalization

Five dioxynaphthalene[38]‐crown‐10 ( DNP38C10 ) macrocycles bearing one, two, three, or four allyl moieties have been synthesized and their ability to spontaneously self‐assemble with methyl viologen to form [2]pseudorotaxanes has been evaluated. Association constants between methyl viologen and several of the allyl‐functionalized DNP38C10 macrocycles are found to be comparable to that of methyl viologen and unfunctionalized DNP38C10 , however, the enthalpic and entropic factors that underlie overall binding free energy vary systematically with increasing allyl substitution. These variations are explained through a combination of solution phase and solid‐state analysis of the macrocycles and their complexes. The utility of endowing DNP38C10 macrocycles with allyl moieties is further demonstrated by the ease with which they can be functionalized through thiol‐ene click chemistry.     

Identification of ligands for the Tau exon 10 splicing regulatory element RNA by using dynamic combinatorial chemistry

We describe the use of dynamic combinatorial chemistry (DCC) to identify ligands for the stem-loop structure located at the exon 10-5'-intron junction of Tau pre-mRNA, which is involved in the onset of several tauopathies including frontotemporal dementia with Parkinsonism linked to chromosome 17 (FTDP-17). A series of ligands that combine the small aminoglycoside neamine and heteroaromatic moieties (azaquinolone and two acridines) have been identified by using DCC. These compounds effectively bind the stem-loop RNA target (the concentration required for 50% RNA response (EC(50)): 2-58 μM), as determined by fluorescence titration experiments. Importantly, most of them are able to stabilize both the wild-type and the +3 and +14 mutated sequences associated with the development of FTDP-17 without producing a significant change in the overall structure of the RNA (as analyzed by circular dichroism (CD) spectroscopy), which is a key factor for recognition by the splicing regulatory machinery. A good correlation has been found between the affinity of the ligands for the target and their ability to stabilize the RNA secondary structure.     

两个手性胶囊分子的氢键介质的动态共价键合成

从手性环己-1,2-二胺衍生的手性双头基前体出发合成了两个手性的双层结构的胶囊化合物。设计前体带有氨基和醛基,它们被连接到两个分子内氢键诱导的折叠体片段上。分子内氢键通过促进三个亚胺键的形成促进两个大环板块的选择性形成。     

A foldamer at the liquid/graphite interface: the effect of interfacial interactions, solvent, concentration, and temperature

The unfolding process and self-assembly of a foldable oligomer (foldamer 1) at the liquid/graphite interface were investigated by scanning tunnelling microscopy. At the level of molecular conformation, we identified several molecular conformations (A(z), B, C, D, E) that represent intermediate states during unfolding, which may help to elucidate the unfolding process at the liquid/graphite interface. Adsorption at the interface traps the intermediate states of the unfolding process, and STM has proved to be a powerful technique for investigating folding and unfolding of a foldamer at the molecular level, which are not accessible by other methods. The STM observations also revealed that varying the solvent and/or concentration results in different self-assemblies of foldamer 1 as a result of variations in molecular conformations. The solvent and concentration effects were attributed to the changes in existing states (extended or folded) of foldamers in solution, which in turn affect the distribution of adsorbed molecular conformations at the interface. This mechanism is quite different from other systems in which solvent and concentration effects were also observed.     

Steroids as organising elements in anion receptors

The steroid nucleus has proved useful in various areas of supramolecular chemistry, acting as a building-block for extended, well-defined molecular architectures, and a scaffold for preorganised arrays of functionality. This article discusses its applications in the area of anion recognition, where cholic acid (2) has been especially valuable. The three secondary hydroxyl groups on 2 are nicely arranged for H-bond donation to a single anion, and may be converted into stronger neutral or positively-charged H-bond donors. Macrocyclic and acyclic receptors derived from 2 have been used to bind inorganic anions, carboxylates and nucleic acids.     

Metal‐Coordination‐Assisted Folding and Guest Binding in Helical Aromatic Oligoamide Molecular Capsules

The development of foldamer‐based receptors is driven by the design of monomers with specific properties. Herein, we introduce a pyridazine‐pyridine‐pyridazine diacid monomer and its incorporation into helical aromatic oligoamide foldamer containers. This monomer codes for a wide helix diameter and can sequester metal ions on the inner wall of the helix cavity. Crystallographic studies and NMR titrations show that part of the metal coordination sphere remains available and may then promote the binding of a guest within the cavity. In addition to metal coordination, binding of the guest is assisted by cooperative interactions with the helix host, thereby resulting in significant enhancements depending on the foldamer sequence, and in slow guest capture and release on the NMR time scale. In the absence of metal ions, the pyridazine‐pyridine‐pyridazine monomer promotes an extended conformation of the foldamer that results in aggregation, including the formation of an intertwined duplex.     

A hybrid foldamer with unique architecture from conformationally constrained aliphatic-aromatic amino acid conjugate

In this paper, we describe the design and synthesis of a novel hybrid foldamer, derived from a conformationally constrained aliphatic-aromatic amino acid conjugate that adopts a well-defined, compact, three-dimensional structure, governed by a combined conformational restriction imposed by the individual amino acids from which the foldamer is composed. Conformational investigations confirmed the prevalence of a unique doubly bent conformation for the foldamer, in both solid and solution states, as evidenced from single crystal X-ray and 2D NOESY studies, respectively. The findings suggest that constrained aliphatic-aromatic amino acid conjugates offer new avenues for the de novo design of hybrid foldamers with distinctive structural architectures. Furthermore, the de novo design strategy disclosed herein has the potential for significantly augmenting the ‘tool-box’ of the modern day peptidomimetic chemist, as well as providing a novel approach to the field of rational design.     

Synthesis, characterization, and fluorescence behavior of twisted and planar B2N2-quaterphenyl analogues

A series of planar and twisted heteroaromatic quaterphenyl analogues containing BN ring linkages has been synthesized using primarily difunctional Lewis acidic diborabiphenyl moieties as molecular cores. Crystal structure analyses indicated the presence of large twist angles between adjacent aromatic rings in 1 and 3, which were also observed to possess nonfluorescent behavior due to a lack of molecular rigidity and insufficient B=N character in the excited state. In contrast, the incorporation of one or two bridging ethylene groups between the adjacent rings (installed via an ethynyl cycloisomerization) was found to afford planar phenanthrene or pyrene moieties, which resulted in weak fluorescence behavior (Phi F = 0.02-0.16) for the n-Bu and Ph derivatives 5-12. Emission colors ranged from green (lambda em = 521 nm) to red (lambda em = 630 nm) and depended primarily on the conformation (2,2'- vs 4,4'-), the extent of chromophore conjugation (phenanthrene vs pyrene), and the type of exocyclic substituent present (n-Bu vs Ph). Communication between the two phenanthrene or pyrene moieties was observed in some cases, which was characterized by bathochromically shifted emission bands relative to that of monomeric phenanthrene or pyrene species. Unique excited-state dimer (excimer) fluorescence was observed for the 2,2'-isomer 8, which was characterized by broad, low-energy emission bands bathochromically shifted from that of the corresponding monomer.     

分析化学的第二个春天

从研究分析化学的历史发展入手，以大量历史事实为根据，指出分析化学曾经历过两次重大变革。第一次变革(19世纪末至20世纪初)使分析化学从分析化学家的技艺发展为科学；第二次变革(20世纪70年代迄今)则使分析化学进入了分析化学家重新当家作主的、欣欣向荣的“第二个春天”。     

Molecular Recognition by Zn(II)-Capped Dynamic Foldamers

Two α-aminoisobutyric acid (Aib) foldamers bearing Zn(II)-chelating N-termini have been synthesized and compared with a reported Aib foldamer that has a bis(quinolinyl)/mono(pyridyl) cap (BQPA group). Replacement of the quinolinyl arms of the BQPA-capped foldamer with pyridyl gave a BPPA-capped foldamer, then further replacement of the linking pyridyl with a 1,2,3-triazole gave a BPTA-capped foldamer. Their ability to relay chiral information from carboxylate bound to Zn(II) at the N-terminus to a glycinamide-based NMR reporter of conformational preference at the C-terminus was measured. The importance of the quinolinyl arms became readily apparent, as the foldamers with pyridyl arms were unable to report on the presence of chiral carboxylate in acetonitrile. Low solubility, X-ray crystallography and ¹H NMR spectroscopy suggested that interfoldamer interactions inhibited carboxylate binding. However changing solvent to methanol revealed that the end-to-end relay of chiral information could be observed for the Zn(II) complex of the BPTA-capped foldamer at low temperature.     

Selective Host Molecules Obtained by Dynamic Adaptive Chemistry

Up till 20 years ago, in order to endow molecules with function there were two mainstream lines of thought. One was to rationally design the positioning of chemical functionalities within candidate molecules, followed by an iterative synthesis–optimization process. The second was the use of a “brutal force” approach of combinatorial chemistry coupled with advanced screening for function. Although both methods provided important results, “rational design” often resulted in time‐consuming efforts of modeling and synthesis only to find that the candidate molecule was not performing the designed job. “Combinatorial chemistry” suffered from a fundamental limitation related to the focusing of the libraries employed, often using lead compounds that limit its scope. Dynamic constitutional chemistry has developed as a combination of the two approaches above. Through the rational use of reversible chemical bonds together with a large plethora of precursor libraries, one is now able to build functional structures, ranging from quite simple molecules up to large polymeric structures. Thus, by introduction of the dynamic component within the molecular recognition processes, a new perspective of deciphering the world of the molecular events has aroused together with a new field of chemistry. Since its birth dynamic constitutional chemistry has continuously gained attention, in particular due to its ability to easily create from scratch outstanding molecular structures as well as the addition of adaptive features. The fundamental concepts defining the dynamic constitutional chemistry have been continuously extended to currently place it at the intersection between the supramolecular chemistry and newly defined adaptive chemistry, a pivotal feature towards evolutive chemistry.     

Polymer-supported synthesis of pyridone-focused libraries as inhibitors of anaplastic lymphoma kinase

The optimization of screening hits on a promising new target for therapy of certain cancers involving anaplastic lymphoma kinase (ALK) inspired the development of this efficient solid-phase chemistry. A series of novel pyridones have been recently discovered as inhibitors of ALK, which led to the design of focused libraries around the pyridone scaffold. A stepwise process involving iterative template modification based on both medicinal chemistry insights and computational ranking of virtual libraries was employed in the design. The unique solid-phase chemistry has addressed the need for rapid optimization of this "early lead" series. Herein the methodology and scope of the chemistry, as well as its application for library synthesis, are discussed.     

Biomimetic facially amphiphilic antibacterial oligomers with conformationally stiff backbones

A foldamer has been designed with a conformationally stiff backbone that is facially amphiphilic. The oligomer has excellent antimicrobial activity and was found to be 18 times more active toward bacterial cells than human red blood cells. The oligomer is built from arylamide bonds around a central 4,6-dicarboxy pyrimidine ring. The conformation was studied by X-ray crystallography and solution NMR spectroscopy. Density-functional (DFT) calculations were performed to guide the design. These calculations accurately predicted the overall conformation as well as NMR chemical shifts. Antibacterial activity was demonstrated against E. coli, a gram-negative strain, and B. subtilis, a gram-positive strain. The minimal inhibitory concentration is 0.8 microg/ml.     

De Novo Design of Xeno‐Metallo Coiled Coils

Bioinorganic chemists aspire to achieve the same exquisite and highly controlled inorganic chemistry featured in biology. An exciting mimetic approach involves the use of miniature artificial protein scaffolds designed de novo (often based on the coiled coil (CC) scaffold), for reproducing native metal ion sites and their function. Recently, there is increased interest, instead, in the design of xeno‐metal sites within CC assemblies. This involves incorporating either non‐biological metal ions, cofactors or non‐proteinogenic amino acid ligands for metal ion coordination, whilst retaining a minimal CC protein scaffold. Using this approach, one should be able to create functional designs with unique and unusual properties, which combine the advantages of both biology and ‘traditional’ non‐biological inorganic chemistry. It is the recent progress with respect to the design of xeno‐metallo CCs which will be discussed in this Focus Review.