AM1, PM3, and PM5 calculations of the absorption maxima of basic organic dyes

The absorption maxima, λ_max, of various organic dyes such as indigo, azobenzene, phenylamine, hydrazone, anthraquinone, naphthoquinone, and malachite green were calculated using the AM1, PM3, and PM5 semiempirical molecular orbital theories with the configuration interaction singles (CIS) and random phase approximation (RPA) approaches. The calculated λ_max were then compared with the values obtained by CNDO/S, INDO/S, ab initio CIS, and time-dependent density functional theory (TD-DFT). We found that the λ_max values calculated by AM1, PM3, and PM5 were in good correlation with the observed λ_max values. When B3LYP/cc-pVDZ optimized geometries were used, the square of the correlation coefficients between the calculated and observed λ_max, , at the AM1-RPA, PM3-RPA, and PM5-RPA levels were 0.891, 0.897, and 0.927, respectively. In particular, at PM5-RPA//B3LYP/cc-pVDZ was the largest among those obtained from all the other calculations including TD/B3LYP/cc-pVDZ//B3LYP/cc-pVDZ . Accordingly, the standard deviation of the difference between observed and calculated λ_max by the linear regression function at PM5-RPA//B3LYP/cc-pVDZ was the smallest. It was therefore concluded that this method was the most promising for the prediction of λ_max of various dyes among the computational methods studied here. When AM1 optimized geometries were used, at the AM1-RPA, PM3-RPA, and PM5-RPA levels were 0.822, 0.841, and 0.901, respectively, and they were also comparable to that at TD/B3LYP/cc-pVDZ//B3LYP/cc-pVDZ. Therefore, although some calibration efforts may be needed for AM1 geometries, PM5-RPA(CIS)//AM1 may be a second candidate available for the prediction of the absorption maxima of dyes, especially in the case of emphasizing computational cost.     

苯并噻二嗪F,Cl,Br和I取代衍生物电子性质的PM3研究

采用半经验PM3方法对1，2，4-苯并噻二嗪-1，1-二氧类化合物的4种衍生物进行了量子化学计算，从几何构型、电子结构、前线分子轨道等几方面探讨了取代后体系电子性质的规律性变化，，为药物合成提供理论基础和实验指导．     

AM1 and PM3 Study of Tautomerism of Hypoxanthine in the Gas and Aqueous Phases

Heats of formation, entropies, Gibbs free energies, relative tautomerisation energies, tautomeric equilibrium constants, dipole moments, and ionization potentials for the eight possible tautomers of hypoxanthine have been studied using semiempirical AM1 and PM3 quantum-chemical calculations at the SCF level in the gas and aqueous phases, with full geometry optimization. The COSMO solvation model was employed for aqueous solution calculations. The calculations show that the two keto tautomers H17 and H19 are the predominant species at room temperature in the gas and aqueous phase. However, the tautomer H17 is the more dominant species in gas phase, while the H19 tautomer is the more dominant species in the aqueous phase. Comparison with available experimental data provides support for the results derived from theoretical computations. The entropy effect on the Gibbs free energy of hypoxanthine is very small and there is little significance for the tautomeric equilibria of the base. The enthalpic term is dominant in the determination of the equilibrium constant.     

表征O－H解离能参数的AM1计算

对17种酚类化合物用半经验量子化学方法AM1计算了表征O－H解离能的参数△HOF值,即酚类化合物与其经抽氢反应产生的自由基生成热之差。经过与实验测定的17种酚类化合物的O－H解离能比较,评价了AM1方法在计算△HOF值方面的有效性。发现AM1计算的△HOF值与O－H解离能有很好的相关性(γ=0.9495),优于经验方法,比如加和规则对O－H解离能的预测。虽然AM1方法在计算间位取代对O－H解离能的贡献方面是无效的,但将用于计算解离能类的参数以预测抗氧化剂活性还是可行的。     

Comparative analysis of the applicability of AM1 and CNDO/2 methods for quantitative prediction of the35Cl NQR frequencies of RC-Cl compounds

The³⁵Cl NQR frequencies of a series of RC-Cl compounds were calculated by the AM1 and CNDO/2 methods in the Townes-Dailey approximation. It was shown that neither of these methods can be directly used for the quantitative prediction of NQR frequencies, and their use in the correlation approach is only possible in narrow series. The AM1 method gives better results for saturated compounds.Institute of Organic and Physical Chemistry, Kazan' Scientific Center, Russian Academy of Sciences, 420083 Kazan'. Translated from Izvestiya Akademii Nauk, Seriya Khimicheskaya, No. 5, pp. 1078–1082, May, 1992.     

A comparative study by AM1, PM3 and ab initio HF/3-21G methods on the structure and reactivity of monosubstituted carbanion 1,2,4-triazolium ylides

A full conformational analysis of six 1,2,4-monosubstituted carbanion 1,2,4-triazolium ylides 4 a–f was performed using AM1, PM3 and HF/3-21G methods. The C-type conformers were found as the most stable structures by these different methods. This study also includes a qualitative estimation of the chemical behavior of triazolium ylides 4 a–f as nucleophilic agents on the level of ylide carbon atoms. The ab initio 3-21G method seems to be the most suitable in the characterization of these molecular systems.     

Theoretical Study of the C_(60)O_3 Isomers

WiththepreparationandisolationofC,,O.'moreandmoreattentionwaspaidtotheirstructuresandpropertiest').WooddetectedC,,O.firstwhentheypreparedC,,byvaporizinggraphite").Fromthenon,thelaboratoriesallovertheworldhavepreparedC6,O.byvariousmethodssuchasPhotoxidationt2-4),Electrochemicaloxi-dation[si,Ozonizationt7.83andChemicaladditiont6'12-14iandsoon.Accordingtothefollow-uptheoreticalstudiesforC,,O.,itisindicatedthattherearetwoisomersofC,,O:eithertheoxygenatomislocatedoverthe6/6bondtogeneratethe6/…     

C70O2可能异构体的结构和电子光谱的理论研究

用AM1、PM3及INDO系列方法研究了C₇₀O₂可能异构体的结构和稳定性.在C₇₀O稳定构型的基础上,考察了C₇₀O₂的45种异构体.结果表明,两个O原子加在碳球极端处同一个六元环内不等价的6/6键上形成环氧结构的构型最稳定.在优化构型的基础上,进行电子光谱计算,并与C₇₀和C₇₀O进行了比较.     

Crystal Structure of 1,1-Dichloro-4-formyl-3-methyl-1a-phenyl-1a,2,3,4-tetrahydro-1H-azirino〔1,2-a〕〔1,5〕benzodiazepine(C_(18)H_(16)Cl_2N_2O)

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Generalized Prediction of Enthalpies of Formation Using DLPNO-CCSD(T) Ab Initio Calculations for Molecules Containing the Elements H,C, N,O, F,S, Cl,Br

The prediction of thermochemical properties such as enthalpies of formation is of crucial importance, both in research and industrial applications, especially for systems involving not well-characterized molecules, such as biomass systems (bio-oils), or systems involving new compounds (new-generation refrigerants). It is highly desirable to obtain an efficient method by which these values can be predicted. Ab initio-based calculations can be very accurate for predicting gas phase thermochemical properties and are usually more versatile than group contribution methods. In this work, we propose a general extension of the work of Paulechka and Kazakov, using very accurate and efficient domain-based local pair natural orbital-coupled cluster theory ab initio calculations, to determine the enthalpies of formation of a broad variety of molecules. New sets of regressed atomic contributions are proposed for a larger group of elements: H, C, N, O, F, S, Cl, and Br. Excellent predictions are obtained for the most studied compounds (bio-oil compounds and refrigerants). © 2019 Wiley Periodicals, Inc.     

Rotational isomerism of vinyl ethers of azines based on the data of IR spectroscopy and quantum-chemical AM1 calculations

The IR spectra of vinyl ethers of azines have two C=C stretching vibration bands of the vinyl group at 1620 and 1640 cm⁻¹, which correspond to thes-cis and nonplanars-trans conformers, respectively. According to the results of AM1 calculations, the hetaryl fragment and the vinyl group in thes-trans conformers of all the ethers under study are twisted out of the C−O−C plane by ∼30°. In thes-cis conformation, the angle of rotation of the heterocycle with respect to the vinyloxy group varies from 45 to 90°. The character of the change in the intensity of the v(C=C) absorption bands of the doublet under changes of the temperature indicates that thes-trans conformer is energetically favorable. The exception is 5-vinyloxyacridine for which thes-cis conformation is more favorable. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 12, pp. 2439–2442, December, 1998.     

Quantum-chemical Modeling of the Reaction of 3-Pyridinecarbaldehyde with 3-Cyano-4,5,5-trimethyl-2(5H)-furanone

The condensation of pyridinecarbaldehydes with 3-cyano-4,5,5-trimethyl-2(5H)-furanone and 3-cyano-4,6,6-trimethyl-5,6-dihydro-2(2H)-pyranone leads to the formation of the products of crotonic condensation and compounds of the Michael adduct type. A model investigation of the mechanism by the semiempirical AM1 quantum-chemical method for the case of the reaction of 3-pyridinecarbaldehyde with 3-cyano-4,5,5-trimethyl-2(5H)-furanone showed that the products can be formed in parallel from one and the same intermediate compound.     

B−Hb←:X (X= N,O, P,S, F,Cl, Br) interactions: A density functional study

Density functional theory calculation on B H_b←:X interaction (X= N, O, P, S, F, Cl, Br) is performed. HOMO energy predicts the feasibility of such complexation. Steric and electronic effects play significant role on geometry of the complexes. Interaction energy suggests that the interaction is moderately strong (< 5.00 kcal mol⁻¹) in nature and the complexes are stable in both gas and solvent phase. Electron donating group on: X facilitates the interaction whereas electron withdrawing group impedes the same. MP2 and CCSD(T) calculations further confirm the suitability of ωB97X‐D and M06‐2X functional for studying such interactions. Dispersive interaction is the primary mode of interaction in stabilizing the complexes. ¹H NMR and IR study are also performed. Thermochemical analysis advocates exothermic nature of complexation.     

Syntheses and Crystal Structures of Complexes [Cu(C14H8N3O4Br)](C4H9NO) and [Ni(C14H9N2O3Br)](C4H9NO)

The title compounds, Cu(L1)(C4H8NHO) and Ni(L2)(C4H8NHO) (H2L1 = 5-bro- mosalicylaldehyde-p-nitrobenzoylhydrazone, H2L2 = 5-bromosalicylaldehyde-p-hydroxybenzo- ylhydrazone), have been obtained and characterized by single-crystal X-ray diffraction. Complex 1 belongs to the triclinic system, space group P1 with a = 8.6960(2), b = 9.957(2), c = 11.878(2) , α = 73.36(3), β = 78.25(3), γ = 82.64(3)o, V = 962.1(3) 3, Mr = 512.81, Z = 2, F(000) = 514, Dc = 1.770 g/cm3, μ(MoKα) = 3.251, R = 0.0337 and wR = 0.0846. Complex 2 is of monoclinic, space group P21/c with a = 13.313(2), b = 8.2096(1), c = 21.890(3) , β = 125.737(3)o, V = 1941.9(4) 3, Mr = 478.97, Z = 4, F(000) = 968, Dc = 1.638 g/cm3, μ(MoKα) = 3.085, R = 0.0356 and wR = 0.0817. The ligands form a satisfactory N2O2 square plane around the metal centers in two compounds. Different patterns of hydrogen bonds are observed owing to the presence of different substituents on aromatic ring of the acylhydrazone Schiff bases. In complex 1, square-planar copper(II) complexes are linked by intermolecular hydrogen bonds leading to zigzag infinite chains. In complex 2, the metal complexes are linked via hydrogen bonds to form corrugated sheets in a staggered fashion; 3D channels along the b axis are constructed through other non-covalent interactions between the neighboring layers.     

Syntheses, Structures and Characterizations of Two New Vanadium(V) Complexes: [PyH][VⅤO2(C14H9N2O3Br)] and [VⅤO(C14H9N2O3Br)(OCH3)]

The new oxovanadium (Ⅴ) complex, [PyH][VO2(L)] 1 (salicyladehyde 5-bromo salicyloylhydrazone is abbreviated as H2L; Hpy is protonated pyridine) was obtained from a refluxed solution of VOSO4 and H2L in acetonitrile-methanol-pyridine. Similarly, another new complex, [VO(L)(OCH3)] 2 was synthesized by refluxing VOSO4 and H2L in methanol-pyridine. Crystal data for 1: C19H15N3O5BrV, Mr = 496.2, monoclinic, P21/n, a = 7.1885(3), b = 9.2718(3), c = 28.803(1) (A), ( = 96.185(1)(, Z = 4 and V = 1908.6(1) (A)3; for 2: C15H12N2O5BrV, Mr = 431.1, monoclinic, P21/n, a = 12.202(2), b = 8.045(2), c = 16.604(3)(A), ( = 101.29(3)(, Z = 4 and V = 1598.4(2)(A)3. The structures of 1 and 2 have been determined by X-ray analyses and reveal that the coordination environments of V atoms in both complexes are of square-based pyramid. Three of the four based donor atoms are from the tridentate "ONO" donor ligand while the fourth is one terminal oxygen atom with the V(1)–O(3) distance 1.646(4) (A) for 1 and one -OCH3 group with the V(1)-O(3) distance 1.753(3)(A) for 2. The V(1)-O(4) terminals occupy the axial sites in both cases. The complexes are also characterized by IR and 1H NMR spectroscopies.     

Crystal Structure of 1,1-Dichloro-3-Dichloromethyl-1a-3-Dipenyl-1a,2,3,4-Tetrahydro-1H-Azirino[1,2-a][1,5]benzodiazepine (C23H18Cl4N2)

The crystal structure of the title compound, 1,1-dichloro-3-dichloro-3-dichloromethyl-1a,3-diphenyl-1a,2,3,4-tetrahydro-1H-azirino[1,2-a][1,5]benzodiazepine (C23H18Cl4N2, Mr=464.22) was crystallizedin triclinic, space group P1, with cell dimensions a=9.621(7), b=9.694(9), c=12.669(6) , α=107.99(5)°, β=101.42(5)°, γ=69.94(6)°, V=1050.2(4)3, Z=2, Dc=1.468 g/cm3, CuKα(λ=1.5418). F(000)=1816, μ=2.44 mm-1. The structure was solved by direct methods and refined by full-matrix least-squares method, and the final crystallographic discrepancy factor is 0.063 for 2555observed reflections. The molecular backbone is a tricyclic system with the central seven-membered 1,5-diazepine ring in twisted boat-like conformation and cis-fused to both aziridine ring and benzene ring.     

Liquid chromatography–tandem mass spectrometry method for simultaneous determination of cyclosporine A and its three metabolites AM1, AM9 and AM4N in whole blood and isolated lymphocytes in renal transplant patients

A LC‐MS/MS method was developed and validated for the determination of cyclosporine A (CsA) and its three phase 1 metabolites AM1, AM9, and AM4N in whole blood and lymphocytes isolated on the Histopaque gradient. 200 μL of whole blood was precipitated with 10 mol/L zinc sulfate in acetonitrile/methanol (40:60, v/v) and lymphocytes isolated from 1.5 mL blood were extracted with acetonitrile/methanol (40:60, v/v). The analytes and internal standard cyclosporine D were separated on RP column BEH C18, 2.1×50 mm, 1.7 μm using gradient LC‐MS/MS analysis in positive electrospray mode. Time of analysis was 5 min. Linearity in blood was 5–2000 μg/L for CsA, AM1, and AM9; 2–500 μg/L for AM4N; and 2–500 μg/L for all substances in lymphocytes. Coefficient of variations was 1.8–9.8% and recovery was 92.0–110.0%. The method was used in early and chronic renal transplant patients for therapeutic drug monitoring of CsA to compare either its share in lymphocytes as target organ or binding to one lymphocyte. The same parameters were calculated for all metabolites tested.     

Crystal Structure of 1,1-Dichloro-3-Dichloromethyl-1a-3-Dipenyl-1a,2,3,4-Tetrahydro-1 H-Azirino〔1,2-a〕〔1,5〕benzodiazepine(C_(23)H_(18)Cl_4N_2)

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Highly accurate benchmark calculations of the interaction energies in the complexes C6H6···C6X6 (X = F,Cl, Br,and I)

Different from the case of the benzene dimer, the differences between the interaction energies are always less than 0.50 kcal/mol for face‐to‐face eclipsed, face‐to‐face staggered, and parallel‐displaced configurations of all investigated complexes C₆H₆···C₆X₆ (X = F, Cl, Br, and I). Hence, it is a great challenge for quantum chemists to accurately calculate the interaction energies for the three configurations of the complexes C₆H₆···C₆X₆. This work demonstrates that results obtained with the PBE0 density functional combined with the D3 dispersion correction (PBE0‐D3) and the basis set def2‐TZVPP are in excellent agreement with the estimates of the coupled‐cluster singles, doubles, and perturbative triples [CCSD(T)] complete basis set (CBS) limit. The other finding in this study is that, in comparison with the gold‐standard CCSD(T)/CBS benchmark, the spin‐component scaled (SCS) zeroth‐order symmetry‐adapted perturbation theory (SAPT0), when paired with the basis set aug‐cc‐pVDZ, performs also very well, and its performance is even better than that of the PBE0‐D3/def2‐TZVPP method or the conventional SAPT/aug‐cc‐pVQZ method. The findings of this study are very significant because both PBE0‐D3/def2‐TZVPP and SCS‐SAPT0/aug‐cc‐pVDZ can deal with the systems with more than 200 atoms.