Absorbed dose distributions in a tissue-equivalent absorber for bremsstrahlung produced at the beamlines of the European Synchrotron Radiation Facility

The absorbed-dose distributions for bremsstrahlung, incident on a tissue-equivalent phantom, were measured with LiF : Mg,Ti thermoluminescent dosimeters at two insertion device beamlines of the European Synchrotron Radiation Facility (ESRF). The measurements were carried out for two different electron beam energies of 4 and 6 GeV. The corresponding bremsstrahlung spectra and power were measured using a high-resolution lead glass total absorption calorimeter. The results are compared with similar measurements carried out at other facilities. The normalized bremsstrahlung absorbed dose in a cross-sectional area of 100 mm², at a depth of 150 mm of the phantom, was measured as 6.1 and 3.6 kGy h⁻¹ W⁻¹ for the corresponding bremsstrahlung spectra of 4  and 6 GeV.     

On the creation of high energy bremsstrahlung and intensity by a multitarget and repeated focusing of the scattered electrons by small-angle backscatter at the wall of a cone and magnetic fields—A possible way to improve linear accelerators in radiotherapy and to verify Heisenberg-Euler scatter

The yield of bremsstrahlung from collisions of fast electrons (energy at least 6 MeV) with a Tungsten target can be significantly improved by exploitation of Tungsten wall scatter in a multi-layered target. The Tungsten wall can serve to refocuse small angle scattered electrons. It is necessary that the thickness of one Tungsten layer does not exceed 0.02 mm. Further repeated focusing of electrons results from suitable magnetic fields with field strength between 0.5 T and 6 T (if the cone with multi-layered targets is rather narrow). Linear accelerators in radiation therapy only need repeated focusing by wall scatter without further magnetic fields (standard case: ca. 100-000 plates with 0.01 mm thickness and 1 mm distance between the plates). The construction of a very narrow bremsstrahlung beam with extremely high photon intensity requires an additional strong magnetic field (order 1-6 T), which provides the possibility to check Heisenberg-Euler scatter of high energy photons.     

Hapten synthesis and antibody production for the development of a melamine immunoassay

The incorporation of melamine into food products is banned but its misuse has been widely reported in both animal feeds and food. The development of a rapid screening immunoassay for monitoring of the substance is an urgent requirement. Two haptens of melamine were synthesized by introducing spacer arms of different lengths and structures on the triazine ring of the analyte molecular structure. 6-Aminocaproic acid and 3-mercaptopropionic acid were reacted with 2-chloro-4,6-diamino-1,3,5-triazine (CAAT) to produce hapten 1 [3-(4,6-diamino-1,6-dihydro-1,3,5-triazin-2-ylamino) hexanoic acid] and hapten 2 [3-(4,6-diamino-1,6-dihydro-1,3,5-triazin-2-ylthio) propanoic acid], respectively. The molecular structures of the two haptens were identified by ¹H nuclear magnetic resonance spectrometry, mass spectrometry and infrared spectrometry. An immunogen was prepared by coupling hapten 1 to bovine serum albumin (BSA). Two plate coating antigens were prepared by coupling both haptens to egg ovalbumin (OVA). A competitive indirect enzyme-linked immunosorbent assay (ciELISA) was developed to evaluate homogeneous and heterogeneous assay formats. The results showed that polyclonal antibodies with high titers were obtained, and the heterogeneous immunoassay format demonstrated a better performance with an IC₅₀ of 70.6 ng mL⁻¹, a LOD of 2.6 ng mL⁻¹ and a LOQ of 7.6 ng mL⁻¹. Except for cyromazine, no obvious cross-reactivity to common compounds was found. The data showed that the hapten synthesis was successful and the resultant antisera could be used in an immunoassay for the rapid and sensitive detection of this banned chemical.     

The Effect of Chain Architecture on the Dynamics of Copolymers in a Homopolymer Matrix: Lattice Monte Carlo Simulations using the Bond‐Fluctuation Model

Summary: The effects of copolymer sequence distribution on the dynamics of a copolymer in a homopolymer matrix are studied using computer simulations within the framework of the bond‐fluctuation model on blends containing low concentrations (10%) of copolymers dispersed in a homopolymer matrix. The sequence distribution of the two copolymer components was changed while maintaining the overall copolymer composition at 50/50. Our results indicate that copolymers with disordered sequence distributions exhibit dynamics that are faster than that of a homopolymer melt, while those with ordered sequence distributions exhibit a tendency to form aggregates that lead to slower dynamics as well as phase separation. Analysis of the structure suggests that copolymers with an alternating sequence distribution form large aggregates that are short‐lived, while diblocks form permanent micelle‐like structures. Analysis of the local composition around a copolymer molecule indicates that aggregation between copolymer chains has a direct impact on the local composition. This in turn has a significant impact on system dynamics. Our results indicate that the dynamics of random, random‐blocky, and alternating copolymers are nearly identical and are faster than that of a homopolymer melt. However, alternating copolymers form aggregates and hence are not uniformly distributed throughout the matrix phase. Thus, alternating copolymers are at a disadvantage in their ability to be effective compatibilizers. From a dynamic perspective, copolymers with random and random‐blocky copolymers seem to be ideal compatibilizers since they are distributed uniformly throughout the system and move rapidly through the matrix phase.

Snapshots of aggregates of alternating copolymer chains. Dark and bright spheres represent A and B monomers, respectively.     

New concept for the preparation of potassium sodides: the use of hexane as a non-polar solvent

NaK alloy in contact with 15-crown-5 hexane solution became potassium sodide K⁺(15-crown-5)₂Na⁻. After the evaporation of hexane the crystalline solid product was analyzed by X-ray diffraction and the lattice parameters were calculated. The potassium sodide thus obtained could be easily dissolved in tetrahydrofuran. A deep blue solution containing sodium anions and complexed potassium cations was formed with a very low concentration of solvated electrons, i.e. of the order of 10⁻⁷ M. Potassium anions were not detected in this case. A new crystalline potassium sodide K⁺(DCH-24-crown-8)₂Na⁻ was obtained using NaK alloy and dicyclohexano-24-crown-8 hexane solution.     

Process development for production of medium chain triglycerides using immobilized lipase in a solvent-free system

The synthesis of tricaprylin, tricaprin, trilaurin, and trimyristin in a solvent-free system was conducted by mixing a commercial immobilized lipase with the organic reagents (glycerol and fatty acid) in a 20-mL batch reactor with constant stirring. The effects of temperature, fatty acid/glycerol molar ratio, and enzyme concentration on the reaction conversion were determined. The reactions were carried out for 26 h and the nonpolar phase was analyzed by gas chromatography. Appreciable levels of medium chain triglycerides were achieved, except for tricaprylin. The higher selectivity values for the production of triglycerides were attained under the following conditions: a fatty acid/glycerol molar ratio of 5; enzyme concentration of 5 or 9% (w/w); and temperatures of 70°C (tricaprin), 80°C (trilaurin), and 90°C (trimyristin). After completion of the esterification reaction under these conditions, the recovery of the triglyceride and fatty acids, and the reusability of the enzyme were studied. The unreacted fatty acid and the produced triglyceride were satisfactorily recovered. The commercial immobilized lipase was used in 10 consecutive batch reactions at 80°C, with 100% selectivity in the trilaurin and trimyristin synthesis. The possibility of enzyme reuse and the recovery of residual fatty acid are relevant results that contribute to increasing the viability of the process.     

Incorporation of deMon2k as a new parallel quantum mechanical code for the PUPIL system

The PUPIL system is a combination of software and protocols for the systematic linkage and interoperation of molecular dynamics and quantum mechanics codes to perform QM/MD (sometimes called QM/MM) calculations. The Gaussian03 and Amber packages were added to the PUPIL suite recently. However, efficient parallel QM codes are critical because calculation of the QM forces is the overwhelming majority of the computational load. Here we report details of incorporation of the deMon2k density functional suite as a new parallel QM code. An additional motivation is to add a highly optimized, purely DFT code. We illustrate with a demonstration study of the influence of perchlorate as a dopant ion of the poly(3,4‐ethylenedioxythiophene) conducting polymer in explicit acetonitrile solvent using Amber and deMon2k. We discuss unanticipated requirements for use of a scheme for semi‐empirical correction of Kohn‐Sham eigenvalues to give physically meaningful one‐electron gap energies. We provide comparison of both geometric parameters and electronic properties for nondoped and doped systems. We also present results comparing deMon2k and Gaussian03 calculation of forces for a short sequence of steps. We discuss briefly some difficult problems of quantum zone SCF convergence for the anionically doped system. The difficulties seem to be caused by well‐know deficiencies in simple approximate exchange‐correlation functionals. © 2010 Wiley Periodicals, Inc. J Comput Chem, 2010     

Comment on “a minimal implementation of the AMBER–GAUSSIAN interface for Ab Initio QM/MM‐MD simulation”

We comment upon the recent critique of use of the Program for User Package Interfacing and Linking (PUPIL) system for linking AMBER and GAUSSIAN in a multiscale quantum mechanical/molecular mechanics (QM/MM) simulation (Okamoto et al., J. Comput. Chem. 2011 , 32, 932). Specifically, their method for computing forces on the MM particles from the QM region via the GAUSSIAN‐03 electrical field was already implemented in PUPIL version 1.3, publicly available beginning December 2009. Some other doubtful characterizations of PUPIL are discussed briefly in the context of current awareness of open‐source codes more generally. © 2012 Wiley Periodicals, Inc.     

Size-dependent phase stability of a molecular nanocrystal: a proxy for investigating the early stages of crystallization

We make the link between the size-dependent phase stability of a nanocrystal and the phase-transition behavior of emerging crystallites during the earliest stages of crystallization, by using the former as a proxy for the latter. We outline an extension of the classical nucleation theory to describe crystal nucleation and subsequent transformations of competing polymorphic phases that characterize Ostwald's rule of stages. The theoretical framework reveals that the relative stability of the competing phases is a function of cluster size, which in turn varies with time, and therefore explains the complex transformation behavior observed for some systems. We investigated the stability of a nanocrystal of dl-norleucine by means of molecular simulation as a proxy for post-nucleation phase-transformation behavior in emerging crystallites. The simulations reveal that, for nanocrystals, the surface energy of the transition state of a transformation can dominate the barrier to phase change, thus causing metastable phases to be stabilized, not because they are thermodynamically stable, but rather due to kinetic hindering. Therefore, in the context of the earliest stages of crystal growth, not only does phase stability vary as a function of cluster size, and hence time, but thermodynamically feasible transformations are also prone to kinetic hindering.     

Computer Study of the Association Behavior of Gradient Copolymers: Analysis of Simulation Results Based on a New Algorithm for Recognition and Classification of Aggregates

We present a computer study of the association behavior of copolymer chains with a gradient part and soluble tail of variable length. As a simulation method we use dynamic Monte Carlo simulation on a simple cubic lattice with pair interaction parameters. The solvent quality and selectivity is modeled by the variation of pair interaction parameters between nearest neighbors on the lattice. The role of the length of soluble part in the self‐assembly and its effect on the structure of aggregates was the main goal of this work. The size and structure of aggregates were analyzed using an improved topological classification method which has been developed and tested in the present study. The structure and association numbers of aggregates were compared with those of linear diblock copolymers.

     

The use of liquid scintillation spectrometry as a very sensitive radioanalytical tool for the determination of alpha,beta and monochromatic electron emitting impurities in radiopharmaceutical compounds

Summary Many labeled compounds are used as radiopharmaceuticals (RP), for emission imaging and metabolic radiotherapy and contain as labeling agents γ, β^-, β⁺, monochromatic e^- and α emitting radionuclides (RN). These labeled compounds very often contain unexpected radionuclidic impurities. Some long-lived isotopic and non-isotopic impurities lead to undesirable radiation doses to the patient and his relatives, as well as to medical/paramedical personnel, other than the general population, due to rad-waste of contaminated specimen and excretion of biological fluids. Use was made of liquid scintillation counting/spectrometry (LSCS) for the detection of tiny amounts of charged particle emitting impurities in RPs labeled with ⁶⁴Cu, ⁶⁷Ga, ⁹⁰Y, ⁹⁰Sr/⁹⁰Y, ¹²³I, ¹⁵³Sm, ¹⁷⁷Lu and ²⁰¹Tl.     

Simulation of mesogenic diruthenium tetracarboxylates: Development of a force field for coordination polymers of the MMX type

A classical molecular mechanics force field, able to simulate coordination polymers (CP) based on ruthenium carboxylates (Ru₂(O₂CR_eq)₄L_ax) (eq = equatorial group containing aliphatic chains, L_ax= axial ligand), has been developed. New parameters extracted from experimental data and quantum calculations on short aliphatic chains model systems were included in the generalized AMBER force field. The proposed parametrization was evaluated using model systems with known structure, containing either short or long aliphatic chains; experimental results were reproduced satisfactorily. This modified force field, although in a preliminary stage, could then be applied to long chain liquid crystalline compounds. The resulting atomistic simulations allowed assessing the relative influence of the factors determining the CP conformation, determinant for the physical properties of these materials. © 2013 Wiley Periodicals, Inc.     

The development of miniSTRs as a method for high-speed direct PCR

There are situations in which it would be very valuable to have a DNA profile within a short time; for example, in mass disasters or airport security. In previous work, we have promoted reduced size STR amplicons for the analysis of degraded DNA. We also noticed that shorter amplicons are more robust during amplification, making them inhibition resistant, and potentially applicable to high-speed direct PCR. Here, we describe a set of miniSTRs capable of rapid direct PCR amplification. The selected markers are a subset of the Combined DNA Index System (CODIS) loci modified to permit high-speed amplification. Using the proposed protocol, the amplification of eight loci plus amelogenin directly from a saliva sample can be completed in 7 min and 38 s using a two-step PCR with 30 cycles of 98°C for 2 s and 62°C for 7 s on a Streck Philisa thermocycler. Selection of DNA polymerase, optimization of the two-step PCR cycling conditions, the primer concentrations, and the dilution of saliva is described. This method shows great potential as a quick screening method to obtain a presumptive DNA profile when time is limited, particularly when combined with high-speed separation and detection methods.     

Study on the Structure of a Mixed KCl and K2SO4 Aqueous Solution Using a Modified X-ray Scattering Device,Raman Spectroscopy,and Molecular Dynamics Simulation

The microstructure of a mixed KCl and K₂SO₄ aqueous solution was studied using X-ray scattering (XRS), Raman spectroscopy, and molecular dynamics simulation (MD). Reduced structure functions [F(Q)], reduced pair distribution functions [G(r)], Raman spectrum, and pair distribution functions (PDF) were obtained. The XRS results show that the main peak (r = 2.81 Å) of G(r) shifted to the right of the axis (r = 3.15 Å) with increased KCl and decreased K₂SO₄. The main peak was at r = 3.15 Å when the KCl concentration was 26.00% and the K₂SO₄ concentration was 0.00%. It is speculated that this phenomenon was caused by the main interaction changing, from K-O_W (r = 2.80 Å) and O_W-O_W (r = 2.80 Å), to Cl⁻-O_W (r = 3.14 Å) and K⁺-Cl⁻ (r = 3.15 Å). According to the trend of the hydrogen bond structure in the Raman spectrum, when the concentration of KCl was high and K₂SO₄ was low, the destruction of the tetrahedral hydrogen bond network in the solution was more serious. This shows that the destruction strength of the anion to the hydrogen bond network structure in solution was Cl⁻ > SO₄²⁻. In the MD simulations, the coordination number of O_W-O_W decreased with increasing KCl concentration, indicating that the tetrahedral hydrogen bond network was severely disrupted, which confirmed the results of the Raman spectroscopy. The hydration radius and coordination number of SO₄²⁻ in the mixed solution were larger than Cl⁻, thus revealing the reason why the solubility of KCl in water was greater than that of K₂SO₄ at room temperature.     

The development of a sampler-sensor using a vanadium-oxinate-polymer film for the selective and direct determination of atmospheric ethanol

The development of a sensor for the direct and selective determination of atmospheric ethanol is in the initial stages. The sensor takes advantage of the selective chemical reaction between ethanol and vanadium oxinate. This reaction occurs in an organic medium where a red colored complex is the product. This reaction is determined spectrophotometrically where the absorbance maxima is 475 nm. The focus of this paper is to discuss the parameters necessary to develop a solid sorbent sampling-sensor which can be used to determine atmospheric ethanol.     

The development of a novel smart mid-infrared sensing methodology for residual solvents

The potential of a novel polymer modified mid-infrared technique as a ‘smart’ sensing methodology is demonstrated. Diffusion of a penetrant (analyte molecule) was monitored into a Teflon® AF2400 membrane through observation of one of its infrared absorption bands. During the diffusion of select analytes, mid-IR polymer bands were observed to experience a red shift (reduction in absorption frequency). The rate of appearance of these bands matched that of analyte diffusion. As these bands are specific to certain analytes, and their intensity is analyte-dependent, monitoring of these shifted bands forms the basis of a ‘smart’ sensing regime. The suitability of this smart sensing methodology for the enhanced detection of several residual solvents is presented. A fivefold increase in sensitivity through the monitoring of these bands was realized for the detection of ethylbenzene. One of the aims of this work was to determine whether the cause of the polymer band shifting is chemical or optical in nature. Result data presented support the hypothesis that polymer/diffusant interactions cause this band shifting. This is demonstrated by the fact that a penetrant (tetrahydrofuran), which affected a band shift in the polymer, displayed a blue shift (increase in absorption frequency) in its own spectrum. Ethanol did not cause a polymer band shift and displayed no band shifts in its absorbance spectrum. The relative absorbance of the shifted polymer bands is compared between analytes and does not demonstrate a correlation to analyte refractive indices supporting a polymer/diffusant interaction hypothesis.     

Stereoselective synthesis of chiral β-amino trifluoromethyl alcohol: development of a manufacturing process for a key intermediate in the production of a novel elastase inhibitor,AE-3763

We have successfully synthesized chiral β-amino trifluoromethyl alcohol (2S,3S)-7a, which is a key intermediate in the production of AE-3763, by stereoselective reduction of N-Cbz-protected 5-hydroxy-5-(trifluoromethyl)-1,3-oxazolidine 4 prepared from L-valine in 3 steps followed by alkaline hydrolysis. This new method can be applied to the industrial-scale synthesis of AE-3763.     

W2466.48 Opens a Gate for a Continuous Intrinsic Water Pathway during Activation of the Adenosine A2A Receptor

The question how G‐protein‐coupled receptors transduce an extracellular signal by a sequence of transmembrane conformational transitions into an intracellular response remains to be solved at molecular detail. Herein, we use molecular dynamics simulations to reveal distinct conformational transitions of the adenosine A_2A receptor, and we found that the conserved W246^6.48 residue in transmembrane helix TM6 performs a key rotamer toggle switch. Agonist binding induces the sidechain of W246^6.48 to fluctuate between two distinct conformations enabling the diffusion of water molecules from the bulk into the center of the receptor. After passing the W246^6.48 gate, the internal water molecules induce another conserved residue, Y288^7.53, to switch to a distinct rotamer conformation establishing a continuous transmembrane water pathway. Further, structural changes of TM6 and TM7 induce local structural changes of the adjacent lipid bilayer.