Negative-ion photoelectron spectroscopy, gas-phase acidity, and thermochemistry of the peroxyl radicals CH(3)OO and CH(3)CH(2)OO

Methyl, methyl-d(3), and ethyl hydroperoxide anions (CH(3)OO(-), CD(3)OO(-), and CH(3)CH(2)OO(-)) have been prepared by deprotonation of their respective hydroperoxides in a stream of helium buffer gas. Photodetachment with 364 nm (3.408 eV) radiation was used to measure the adiabatic electron affinities: EA[CH(3)OO, X(2)A' '] = 1.161 +/- 0.005 eV, EA[CD(3)OO, X(2)A' '] = 1.154 +/- 0.004 eV, and EA[CH(3)CH(2)OO, X(2)A' '] = 1.186 +/- 0.004 eV. The photoelectron spectra yield values for the term energies: Delta E(X(2)A' '-A (2)A')[CH(3)OO] = 0.914 +/- 0.005 eV, Delta E(X(2)A' '-A (2)A')[CD(3)OO] = 0.913 +/- 0.004 eV, and Delta E(X(2)A' '-A (2)A')[CH(3)CH(2)OO] = 0.938 +/- 0.004 eV. A localized RO-O stretching mode was observed near 1100 cm(-1) for the ground state of all three radicals, and low-frequency R-O-O bending modes are also reported. Proton-transfer kinetics of the hydroperoxides have been measured in a tandem flowing afterglow-selected ion flow tube (FA-SIFT) to determine the gas-phase acidity of the parent hydroperoxides: Delta(acid)G(298)(CH(3)OOH) = 367.6 +/- 0.7 kcal mol(-1), Delta(acid)G(298)(CD(3)OOH) = 367.9 +/- 0.9 kcal mol(-1), and Delta(acid)G(298)(CH(3)CH(2)OOH) = 363.9 +/- 2.0 kcal mol(-1). From these acidities we have derived the enthalpies of deprotonation: Delta(acid)H(298)(CH(3)OOH) = 374.6 +/- 1.0 kcal mol(-1), Delta(acid)H(298)(CD(3)OOH) = 374.9 +/- 1.1 kcal mol(-1), and Delta(acid)H(298)(CH(3)CH(2)OOH) = 371.0 +/- 2.2 kcal mol(-1). Use of the negative-ion acidity/EA cycle provides the ROO-H bond enthalpies: DH(298)(CH(3)OO-H) = 87.8 +/- 1.0 kcal mol(-1), DH(298)(CD(3)OO-H) = 87.9 +/- 1.1 kcal mol(-1), and DH(298)(CH(3)CH(2)OO-H) = 84.8 +/- 2.2 kcal mol(-1). We review the thermochemistry of the peroxyl radicals, CH(3)OO and CH(3)CH(2)OO. Using experimental bond enthalpies, DH(298)(ROO-H), and CBS/APNO ab initio electronic structure calculations for the energies of the corresponding hydroperoxides, we derive the heats of formation of the peroxyl radicals. The "electron affinity/acidity/CBS" cycle yields Delta(f)H(298)[CH(3)OO] = 4.8 +/- 1.2 kcal mol(-1) and Delta(f)H(298)[CH(3)CH(2)OO] = -6.8 +/- 2.3 kcal mol(-1).     

Dihydrogen trioxide clusters, (HOOOH)n (n = 2-4), and the hydrogen-bonded complexes of HOOOH with acetone and dimethyl ether: implications for the decomposition of HOOOH

Hydrogen-bonded gas-phase molecular clusters of dihydrogen trioxide (HOOOH) have been investigated using DFT (B3LYP/6-311++G(3df,3pd)) and MP2/6-311++G(3df,3pd) methods. The binding energies, vibrational frequencies, and dipole moments for the various dimer, trimer, and tetramer structures, in which HOOOH acts as a proton donor as well as an acceptor, are reported. The stronger binding interaction in the HOOOH dimer, as compared to that in the analogous cyclic structure of the HOOH dimer, indicates that dihydrogen trioxide is a stronger acid than hydrogen peroxide. A new decomposition pathway for HOOOH was explored. Decomposition occurs via an eight-membered ring transition state for the intermolecular (slightly asynchronous) transfer of two protons between the HOOOH molecules, which form a cyclic dimer, to produce water and singlet oxygen (Delta (1)O 2). This autocatalytic decomposition appears to explain a relatively fast decomposition (Delta H a(298K) = 19.9 kcal/mol, B3LYP/6-311+G(d,p)) of HOOOH in nonpolar (inert) solvents, which might even compete with the water-assisted decomposition of this simplest of polyoxides (Delta H a(298K) = 18.8 kcal/mol for (H 2O) 2-assisted decomposition) in more polar solvents. The formation of relatively strongly hydrogen-bonded complexes between HOOOH and organic oxygen bases, HOOOH-B (B = acetone and dimethyl ether), strongly retards the decomposition in these bases as solvents, most likely by preventing such a proton transfer.     

On the nature of the unusually long OO bond in HO(3) and HO(4) radicals

The HO(3) and HO(4) polyoxide radicals have attracted some attention due to their potential role in ozone chemistry. Experimentally, the geometrical structure of HO(3) is known whereas that of HO(4) is not. Moreover, the existence of the latter radical has been questioned. Theoretical calculations on the two species have been reported before, showing important structural differences depending on the computational level. Both radicals present an unusually long OO bond (around 1.7-1.8 A) that can be associated with an intricate interaction between HO, or HO(2), with O(2). The nature of such interaction is investigated in detail using large scale ab initio methods (CASSCF, CASPT2, MRCI, QCISD, CCSD(T)) and density functional techniques (B3LYP) in connection with extended basis sets. Stabilization enthalpies at 298 K with respect to HO (or HO(2)) and O(2) have been computed amounting to -3.21 kcal mol(-1) for HO(3) (trans conformation) and 11.33 kcal mol(-1) for HO(4) (cis conformation). The corresponding formation enthalpies are 6.12 and 11.83 kcal mol(-1). The trans conformation of HO(4) is less stable than the cis one by 6.17 kcal mol(-1). Transition states for HO(4) dissociation and for cis/trans conversion are also described.     

Cheletropic decomposition of cyclic nitrosoamines revisited: the nature of the transition states and a critical role of the ring strain

The cheletropic decompositions of 1-nitrosoaziridine (1), 1-nitroso-Delta(3)-pyrroline (2), 7-nitroso-7-azabicyclo[2.2. 1]hepta-2,5-diene (3), and 6-nitroso-6-azabicyclo[2.1.1]hexa-4-ene (4) have been studied theoretically using high level ab initio computations. Activation parameters of the decomposition of nitrosoaziridine 1 were obtained experimentally in heptane (DeltaH()(298) = 18.6 kcal mol(-)(1), DeltaS()(298) = -7.6 cal mol(-)(1) K(-)(1)) and methanol (20.3 kcal mol(-)(1), 0.3 cal mol(-)(1) K(-)(1)). Among employed theoretical methods (B3LYP, MP2, CCD, CCSD(T)//CCD), the B3LYP method in conjunction with 6-31+G, 6-311+G, and 6-311++G(3df,2pd) basis sets gives the best agreement with experimental data. It was found that typical N-nitrosoheterocycles 2-4 which have high N-N bond rotation barriers (>16 kcal mol(-)(1)) extrude nitrous oxide via a highly asynchronous transition state with a planar ring nitrogen atom. Nitrosoaziridine 1, with a low rotation barrier (<9 kcal mol(-)(1)) represents a special case. This compound can eliminate N(2)O via a low energy linear synperiplanar transition state (DeltaH()(298) = 20.6 kcal mol(-)(1), DeltaS()(298) = 2.5 cal mol(-)(1) K(-)(1)). Two higher energy transition states are also available. The B3LYP activation barriers of the cheletropic fragmentation of nitrosoheterocycles 2-4 decrease in the series: 2 (58 kcal mol(-)(1)) > 3 (18 kcal mol(-)(1)) > 4 (12) kcal mol(-)(1). The relative strain energies increase in the same order: 2 (0 kcal mol(-)(1)) < 3 (39 kcal mol(-)(1)) < 4 (52 kcal mol(-)(1)). Comparison of the relative energies of 2-4 and their transition states on a common scale where the energy of nitrosopyrroline 2 is assumed as reference indicates that the thermal stability of the cyclic nitrosoamines toward cheletropic decomposition is almost entirely determined by the ring strain.     

Reaction mechanism between carbonyl oxide and hydroxyl radical: a theoretical study

The reaction mechanism of carbonyl oxide with hydroxyl radical was investigated by using CASSCF, B3LYP, QCISD, CASPT2, and CCSD(T) theoretical approaches with the 6-311+G(d,p), 6-311+G(2df, 2p), and aug-cc-pVTZ basis sets. This reaction involves the formation of H2CO + HO2 radical in a process that is computed to be exothermic by 57 kcal/mol. However, the reaction mechanism is very complex and begins with the formation of a pre-reactive hydrogen-bonded complex and follows by the addition of HO radical to the carbon atom of H2COO, forming the intermediate peroxy-radical H2C(OO)OH before producing formaldehyde and hydroperoxy radical. Our calculations predict that both the pre-reactive hydrogen-bonded complex and the transition state of the addition process lie energetically below the enthalpy of the separate reactants (DeltaH(298K) = -6.1 and -2.5 kcal/mol, respectively) and the formation of the H2C(OO)OH adduct is exothermic by about 74 kcal/mol. Beyond this addition process, further reaction mechanisms have also been investigated, which involve the abstraction of a hydrogen of carbonyl oxide by HO radical, but the computed activation barriers suggest that they will not contribute to the gas-phase reaction of H2COO + HO.     

Thermochemistry of the hypobromous and hypochlorous acids, HOBr and HOCl

The enthalpies of formation of HOBr and HOCl have been estimated by employing coupled cluster theory in conjunction with the correlation consistent basis sets and corrections for core-valence, relativistic, and anharmonic effects. We have employed three different reactions to estimate the DeltaH(o)(f,298)(HOBr), namely, the atomization reaction and two homodesmic reactions. Our best estimation is DeltaH(o)(f,298) (HOBr) = -15.3 +/- 0.6 kcal/mol and is very likely to lie toward the more negative values. The present value is 1.4 kcal/mol lower than the widely used experimental determination of Ruscic and Berkowitz (J. Chem. Phys. 1994, 101, 7795), DeltaH(o)(f,298)(HOBr) > -13.93 +/- 0.42 kcal/mol. However, it is closer to the more recent measurement of Lock et al. (J. Phys. Chem. 1996, 100, 7972), DeltaH(o)(f,298)(HOBr) = -14.8 +/- 1 kcal/mol. In the case of HOCl we have determined DeltaH(o)(f,298)(HOCl) = -18.1 +/- 0.3 kcal/mol, just in the middle of the two experimental values proposed, -17.8 +/- 0.5 kcal/mol (JANAF), obtained from equilibrium constant measurements, and -18.36 +/- 0.03 kcal/mol (Joens, J. A. J. Phys. Chem. A 2001, 105, 11041), determined from the measurements of the Cl-OH bond energy. If our conclusions are correct, several enthalpies of formation that have been determined by experimental chemists, Orlando and Burholder (J. Phys. Chem. 1995, 99, 1143), and theoretical chemists, Lee (J. Phys. Chem. 1995, 99, 15074), need to be revised, since a larger value was used for DeltaH(o)(f,298)(HOBr). Employing the results obtained by Orlando and Burkholder for Br(2)O we propose DeltaH(o)(f,298)(Br(2)O) = 24.9 +/- 0.6 kcal/mol, and employing Lee's enthalpies of reaction we propose the following DeltaH(o)(f,298): for BrBrO, HBrO, ClOBr, ClBrO, BrClO, BrCN, BrNC, BrNO, BrON, FOBr, and FBrO, 39.5 +/- 1, 41.0 +/- 1, 22.7 +/- 1.5, 34.2 +/- 1.5, 40.9 +/- 1.5, 43.7 +/- 1.5, 80.1 +/- 1.5, 22.3 +/- 1, 46.2 +/- 1, 17.3 +/- 1.5, and 6.3 +/- 1.5 kcal/mol, respectively. We expect that this work will stimulate new experimental measurements of the thermodynamic properties of HOBr and HOCl.     

Heats of formation of triplet ethylene, ethylidene, and acetylene

Heats of formation of the lowest triplet state of ethylene and the ground triplet state of ethylidene have been predicted by high level electronic structure calculations. Total atomization energies obtained from coupled-cluster CCSD(T) energies extrapolated to the complete basis set limit using correlation consistent basis sets (CBS), plus additional corrections predict the following heats of formation in kcal/mol: DeltaH0r(C2H4,3A1) = 80.1 at 0 K and 78.5 at 298 K, and DeltaH0t(CH3CH,3A' ') = 86.8 at 0 K and 85.1 at 298 K, with an error of less than +/-1.0 kcal/mol. The vertical and adiabatic singlet-triplet separation energies of ethylene were calculated as DeltaES-T,vert = 104.1 and DeltaES-T,adia = 65.8 kcal/mol. These results are in excellent agreement with recent quantum Monte Carlo (DMC) values of 103.5 +/- 0.3 and 66.4 +/- 0.3 kcal/mol. Both sets of computational values differ from the experimental estimate of 58 +/- 3 kcal/mol for the adiabatic splitting. The computed singlet-triplet gap at 0 K for acetylene is DeltaES-T,adia(C2H2) = 90.5 kcal/mol, which is in notable disagreement with the experimental value of 82.6 kcal/mol. The heat of formation of the triplet is DeltaH0tC2H2,3B2) = 145.3 kcal/mol. There is a systematic underestimation of the singlet-triplet gaps in recent photodecomposition experiments by approximately 7 to 8 kcal/mol. For vinylidene, we predict DeltaH0t(H2CC,1A1) = 98.8 kcal/mol at 298 K (exptl. 100.3 +/- 4.0), DeltaH0t(H2CC,3B2) = 146.2 at 298 K, and an energy gap DeltaES-T-adia(H2CC) = 47.7 kcal/mol.     

Active Thermochemical Tables: accurate enthalpy of formation of hydroperoxyl radical, HO2

Through the use of the Active Thermochemical Tables approach, the best currently available enthalpy of formation of HO2 has been obtained as delta(f)H(o)298 (HO2) = 2.94 +/- 0.06 kcal mol(-1) (3.64 +/- 0.06 kcal mol(-1) at 0 K). The related enthalpy of formation of the positive ion, HO2+, within the stationary electron convention is delta(f)H(o)298 (HO2+) = 264.71 +/- 0.14 kcal mol(-1) (265.41 +/- 0.14 kcal mol(-1) at 0 K), while that for the negative ion, HO2- (within the same convention), is delta(f)H(o)298 (HO2-) = -21.86 +/- 0.11 kcal mol(-1) (-21.22 +/- 0.11 kcal mol(-1) at 0 K). The related proton affinity of molecular oxygen is PA298(O2) = 100.98 +/- 0.14 kcal mol(-1) (99.81 +/- 0.14 kcal mol(-1) at 0 K), while the gas-phase acidity of H2O2 is delta(acid)G(o)298 (H2O2) = 369.08 +/- 0.11 kcal mol(-1), with the corresponding enthalpy of deprotonation of H2O2 of delta(acid)H(o)298 (H2O2) = 376.27 +/- 0.11 kcal mol(-1) (375.02 +/- 0.11 kcal mol(-1) at 0 K). In addition, a further improved enthalpy of formation of OH is briefly outlined, delta(f)H(o)298 (OH) = 8.93 +/- 0.03 kcal mol(-1) (8.87 +/- 0.03 kcal mol(-1) at 0 K), together with new and more accurate enthalpies of formation of NO, delta(f)H(o)298 (NO) = 21.76 +/- 0.02 kcal mol(-1) (21.64 +/- 0.02 kcal mol(-1) at 0 K) and NO2, delta(f)H(o)298 (NO2) = 8.12 +/- 0.02 kcal mol(-1) (8.79 +/- 0.02 kcal mol(-1) at 0 K), as well as H(2)O(2) in the gas phase, delta(f)H(o)298 (H2O2) = -32.45 +/- 0.04 kcal mol(-1) (-31.01 +/- 0.04 kcal mol(-1) at 0 K). The new thermochemistry of HO2, together with other arguments given in the present work, suggests that the previous equilibrium constant for NO + HO2 --> OH + NO2 was underestimated by a factor of approximately 2, implicating that the OH + NO2 rate was overestimated by the same factor. This point is experimentally explored in the companion paper of Srinivasan et al. (next paper in this issue).     

The ozonolysis of acetylene--a quantum chemical investigation.

The ozonolysis of acetylene was investigated using CCSD(T), CASPT2, and B3LYP-DFT in connection with a 6-311+G(2d,2p) basis set. The reaction is initiated by the formation of a van der Waals complex followed by a [4pi + 2pi] cycloaddition between ozone and acetylene (activation enthalpy DeltaH(a)(298) = 9.6 kcal/mol; experiment, 10.2 kcal/mol), yielding 1,2,3-trioxolene, which rapidly opens to alpha-ketocarbonyl oxide 5. Alternatively, an O atom can be transferred from ozone to acetylene (DeltaH(a)(298) = 15.6 kcal/mol), thus leading to formyl carbene, which can rearrange to oxirene or ketene. The key compound in the ozonolysis of acetylene is 5 because it is the starting point for the isomerization to the corresponding dioxirane 19 (DeltaH(a)(298) = 16.9 kcal/mol), for the cyclization to trioxabicyclo[2.1.0]pentane 10 (DeltaH(a)(298) = 19.5 kcal/mol), for the formation of hydroperoxy ketene 15 (DeltaH(a)(298) = 20.6 kcal/mol), and for the rearrangement to dioxetanone 9 (DeltaH(a)(298) = 23.6 kcal/mol). Compounds 19, 10, 15, and 9 rearrange or decompose with barriers between 13 and 16 kcal/mol to yield as major products formanhydride, glyoxal, formaldehyde, formic acid, and (to a minor extent) glyoxylic acid. Hence, the ozonolysis of acetylene possesses a very complicated reaction mechanism that deserves intensive experimental studies.     

Equilibrium thermodynamic studies in water: reactions of dihydrogen with rhodium(III) porphyrins relevant to Rh-Rh, Rh-H, and Rh-OH bond energetics

Aqueous solutions of rhodium(III) tetra p-sulfonatophenyl porphyrin ((TSPP)Rh(III)) complexes react with dihydrogen to produce equilibrium distributions between six rhodium species including rhodium hydride, rhodium(I), and rhodium(II) dimer complexes. Equilibrium thermodynamic studies (298 K) for this system establish the quantitative relationships that define the distribution of species in aqueous solution as a function of the dihydrogen and hydrogen ion concentrations through direct measurement of five equilibrium constants along with dissociation energies of D(2)O and dihydrogen in water. The hydride complex ([(TSPP)Rh-D(D(2)O)](-4)) is a weak acid (K(a)(298 K) = (8.0 +/- 0.5) x 10(-8)). Equilibrium constants and free energy changes for a series of reactions that could not be directly determined including homolysis reactions of the Rh(II)-Rh(II) dimer with water (D(2)O) and dihydrogen (D(2)) are derived from the directly measured equilibria. The rhodium hydride (Rh-D)(aq) and rhodium hydroxide (Rh-OD)(aq) bond dissociation free energies for [(TSPP)Rh-D(D(2)O)](-4) and [(TSPP)Rh-OD(D(2)O)](-4) in water are nearly equal (Rh-D = 60 +/- 3 kcal mol(-1), Rh-OD = 62 +/- 3 kcal mol(-1)). Free energy changes in aqueous media are reported for reactions that substitute hydroxide (OD(-)) (-11.9 +/- 0.1 kcal mol(-1)), hydride (D(-)) (-54.9 kcal mol(-1)), and (TSPP)Rh(I): (-7.3 +/- 0.1 kcal mol(-1)) for a water in [(TSPP)Rh(III)(D(2)O)(2)](-3) and for the rhodium hydride [(TSPP)Rh-D(D(2)O)](-4) to dissociate to produce a proton (9.7 +/- 0.1 kcal mol(-1)), a hydrogen atom (approximately 60 +/- 3 kcal mol(-1)), and a hydride (D(-)) (54.9 kcal mol(-1)) in water.     

Is benzene oxide homoaromatic? A microcalorimetric study

Rate constants and heats of reaction for the aromatization of benzene oxide (1) and the acid-catalyzed aromatization of benzene hydrate (2) in highly aqueous solution giving phenol and benzene, respectively, have been measured by heat-flow microcalorimetry. The measured heat of reaction of benzene oxide, DeltaH = -57.0 kcal mol(-1), is much larger than that of benzene hydrate, DeltaH = -38.7 kcal mol(-1), despite an unusually low reactivity of benzene oxide, rate ratio 0.08. The measured enthalpies agree with those calculated using the B3LYP hybrid functional corrected with solvation energies derived from semiempirical AM1/SM2 calculations. Comparison with the measured enthalpies of the corresponding reactions of the structurally related 1,3-cyclohexadiene oxide (3) and 2-cyclohexenol (4) of DeltaH = -24.9 kcal mol(-1) (includes a small calculated correction of -1.2 kcal mol(-1)) and DeltaH approximately 0 kcal mol(-1), respectively, gives a smaller aromatization energy for the benzene oxide than for the benzene hydrate reaction (DeltaDeltaDeltaH = 6.6 kcal mol(-1)). This suggests that benzene oxide is unusually stabilized by a significant amount of homoaromatization as has been proposed previously (J. Am. Chem. Soc. 1993, 115, 5458). This unusual stability accounts for more than half of the approximately 10(7) times lower than expected reactivity of benzene oxide toward acid-catalyzed isomerization. The rest is suggested to originate from an unusually high energy of the carbocation-forming transition state.     

Hemiortho esters and hydrotrioxides as the primary products in the low-temperature ozonation of cyclic acetals: an experimental and theoretical investigation

Low-temperature ozonation (-78 degrees C) of 1,3-dioxolanes 1a-1f and 1,3-dioxanes 1g and h in acetone-d6, methyl acetate, and tert-butyl methyl ether produced both the corresponding hemiortho esters (2a-h, ROH) and acetal hydrotrioxides (3a-h, ROOOH) in molar ratios ROH/ROOOH ranging from 0.5 to 23. Both types of intermediates were fully characterized by 1H, 13C, and 17O NMR spectroscopy. DFT calculations suggest that ozone abstracts a hydride ion from 1 to form an ion pair, R+ -OOOH, which subsequently collapses to either the corresponding hemiortho ester (ROH) or the acetal hydrotrioxide (ROOOH). Hemiortho esters decomposed quantitatively into the corresponding hydroxy esters. Experimentally obtained activation parameters for the decomposition of 2a (E(a) = 13.5 +/- 1.0 kcal/mol, log A = 8.3 +/- 1.0) are in accord with a highly oriented transition state involving, according to B3LYP calculations (deltaH(a)(298) = 13.2 kcal/mol), two molecules of water as a bifunctional catalyst. This mechanism is also supported by the magnitude of the solvent isotope effect for the decomposition of 2e, i.e., k(H2O)/k(D2O) = 4.6 +/- 1.2. Besides the hydroxy esters and oxygen (3O2/1O2), dihydrogen trioxide (HOOOH) was formed in the decomposition of most of the acetal hydrotrioxides (ROOOH) investigated. The activation parameters for the decomposition of the hydrotrioxides 3a-e in various solvents were E(a) = 20 +/- 2 kcal/mol, log A = 13.5 +/- 1.5. Several mechanistic possibilities for the decomposition of ROOOH were tested by experiment and theory. The formation of the hydroxy esters and oxygen could be explained by the intramolecular transfer of the proton to form the hydroxy ester. The assistance of water in the decomposition of ROOOH to form the hydroxy esters, either directly or via hemiortho esters, was also investigated. According to DFT calculations, the formation of a hydroxy ester via hemiortho ester is energetically more favorable (deltaH(a)(298) = 14.5 kcal/mol), again due to the catalytic effect of two water molecules. HOOOH generation requires the involvement of water in the decomposition of ROOOH where the direct formation out of ROOOH is energetically preferred. The energy for a reaction between two molecules of water and singlet oxygen (delta1O2) is too high to occur in solution.     

Does Silica Surface Catalyse Peptide Bond Formation? New Insights from First‐Principles Calculations

The role that silica surface could have played in prebiotic chemistry as a catalyst for peptide bond formation has been addressed at the B3LYP/6-31+G(d,p) level for a model reaction involving glycine and ammonia on a silica cluster mimicking an isolated terminal silanol group present at the silica surface. Hydrogen-bond complexation between glycine and the silanol is followed by the formation of the mixed surface anhydride Si(surf)-O-C(=O)-R, which has been suggested in the literature to activate the C=O bond towards nucleophilic attack by a second glycine molecule, here simulated by the simpler NH3 molecule. However, B3LYP/6-31+G(d,p) calculations show that formation of the surface mixed anhydride Si(surf)-O-C(=O)-R is disfavoured (delta(r)G298 approximately 6 kcal mol(-1)), and that the surface bond only moderately lowers the free-energy barrier of the nucleophilic attack responsible for peptide bond formation (deltaG298(double dagger) approximately 48 kcal mol(-1)) in comparison with the uncatalysed reaction (deltaG298(double dagger) approximately 52 kcal mol(-1)). A further decrease of the free-energy barrier of peptide bond formation (deltaG298(double dagger) approximately 41 kcal mol(-1)) is achieved by a single water molecule close to the reaction centre acting as a proton-transfer helper in the activated complex. A possible role of strained silica surface defects on the formation of the surface mixed anhydride Si(surf)-O-C(=O)-R has also been addressed.     

The OH* + CH3SH reaction: support for an addition-elimination mechanism from ab initio calculations

Several intermediates for the CH(3)SH + OH(*) --> CH(3)S(*) + H(2)O reaction were identified using MP2(full) 6-311+g(2df,p) ab initio calculations. An adduct, CH(3)S(H)OH(*), I, with electronic energy 13.63 kJ mol(-1) lower than the reactants, and a transition state, II(double dagger), located 5.14 kJ mol(-1) above I, are identified as the entrance channel for an addition-elimination reaction mechanism. After adding zero-point and thermal energies, DeltaH(r,298) ( degrees )(reactants --> I) = -4.85 kJ mol(-1) and DeltaH(298) (double dagger)(I --> II(double dagger)) = +0.10 kJ mol(-1), which indicates that the potential energy surface is broad and flat near the transition state. The calculated imaginary vibrational frequency of the transition state, 62i cm(-1), is also consistent with an addition-elimination mechanism. These calculations are consistent with experimental observations of the OH(*) + CH(3)SH reaction that favored an addition-elimination mechanism rather than direct hydrogen atom abstraction. An alternative reaction, CH(3)SH + OH(*) --> CH(3)SOH + H(*), with DeltaH(r,298) ( degrees ) = +56.94 kJ mol(-1) was also studied, leading to a determination of DeltaH(f,298) ( degrees )(CH(3)SOH) = -149.8 kJ mol(-1).     

Gas-phase thermochemical properties of pyrimidine nucleobases

The gas-phase acidity and proton affinity of thymine, cytosine, and 1-methyl cytosine have been examined using both theoretical (B3LYP/6-31+G*) and experimental (bracketing, Cooks kinetic) methods. This paper represents a comprehensive examination of multiple acidic sites of thymine and cytosine and of the acidity and proton affinity of thymine, cytosine, and 1-methyl cytosine. Thymine exists as the most stable "canonical" tautomer in the gas phase, with a DeltaH(acid) of 335 +/- 4 kcal mol(-1) (DeltaG(acid) = 328 +/- 4 kcal mol(-1)) for the more acidic N1-H. The acidity of the less acidic N3-H site has not, heretofore, been measured; we bracket a DeltaH(acid) value of 346 +/- 3 kcal mol(-1) (DeltaG(acid) = 339 +/- 3 kcal mol(-1)). The proton affinity (PA = DeltaH) of thymine is measured to be 211 +/- 3 kcal mol(-1) (GB = DeltaG = 203 +/- 3 kcal mol(-1)). Cytosine is known to have several stable tautomers in the gas phase in contrast to in solution, where the canonical tautomer predominates. Using bracketing methods in an FTMS, we measure a DeltaH(acid) for the more acidic site of 342 +/- 3 kcal mol(-1) (DeltaG(acid) = 335 +/- 3 kcal mol(-1)). The DeltaH(acid) of the less acidic site, previously unknown, is 352 +/- 4 kcal mol(-1) (345 +/- 4 kcal mol(-1)). The proton affinity is 228 +/- 3 kcal mol(-1) (GB = 220 +/- 3 kcal mol(-1)). Comparison of these values to calculations indicates that we most likely have a mixture of the canonical tautomer and two enol tautomers and possibly an imine tautomer under our conditions in the gas phase. We also measure the acidity and proton affinity of cytosine using the extended Cooks kinetic method. We form the proton-bound dimers via electrospray of an aqueous solution, which favors cytosine in the canonical form. The acidity of cytosine using this method is DeltaH(acid) = 343 +/- 3 kcal mol(-1), PA = 227 +/- 3 kcal mol(-1). We also examined 1-methyl cytosine, which has fewer accessible tautomers than cytosine. We measure a DeltaH(acid) of 349 +/- 3 kcal mol(-1) (DeltaG(acid) = 342 +/- 3 kcal mol(-1)) and a PA of 230 +/- 3 kcal mol(-1) (GB = 223 +/- 3 kcal mol(-1)). Our ultimate goal is to understand the intrinsic reactivity of nucleobases; gas-phase acidic and basic properties are of interest for chemical reasons and also possibly for biological purposes because biological media can be quite nonpolar.     

Mechanism of HCS + O2 reaction: hydrogen- or oxygen-transfer?

In spite of the potential importance of the HCS radical in both combustion and interstellar processes, its chemical reactivity has not been tackled previously. In the present paper, the oxidation reaction of the HCS radical is theoretically investigated for the first time at the CCSD(T)/6-311++G(3df,2p)//BH&HLYP/6-311++G(d,p)+ZPVE and Gaussian-3//B3LYP/6-31G(d) levels. It is shown that the most feasible pathway is the O2 addition to the HCS radical forming the intermediate SC(H)OO which can undergo a subsequent O-extrusion leading to SC(H)O + 3O. This features an indirect O-transfer mechanism with the overall barrier of 4.4 and 3.5 kcal mol(-1), respectively, at the two levels. However, formation of the H-transfer product CS + HO2 is kinetically much less feasible, i.e., the direct mechanism has barriers of 14.3 and 8.7 kcal mol(-1), whereas the indirect mechanism has barriers of 12.6 and 10.7 kcal mol(-1), respectively. This result is in sharp contrast to the analogous HCO + O2 reaction, where the direct (with a barrier of 2.98 kcal mol(-1)) and indirect (2.26 kcal mol(-1)) H-transfer processes are highly competitive over the indirect O-transfer process (the least endothermicity is 19.9 kcal mol(-1)). The possible explanations and implications of the present results are provided.     

Thermochemical studies of N-methylpyrazole and N-methylimidazole

The 351.1 nm photoelectron spectra of the N-methyl-5-pyrazolide anion and the N-methyl-5-imidazolide anion are reported. The photoelectron spectra of both isomers display extended vibrational progressions in the X2A' ground states of the corresponding radicals that are well reproduced by Franck-Condon simulations, based on the results of B3LYP/6-311++G(d,p) calculations. The electron affinities of the N-methyl-5-pyrazolyl radical and the N-methyl-5-imidazolyl radical are 2.054 +/- 0.006 eV and 1.987 +/- 0.008 eV, respectively. Broad vibronic features of the A(2)A' ' states are also observed in the spectra. The gas-phase acidities of N-methylpyrazole and N-methylimidazole are determined from measurements of proton-transfer rate constants using a flowing afterglow-selected ion flow tube instrument. The acidity of N-methylpyrazole is measured to be Delta(acid)G(298) = 376.9 +/- 0.7 kcal mol(-1) and Delta(acid)H(298) = 384.0 +/- 0.7 kcal mol(-1), whereas the acidity of N-methylimidazole is determined to be Delta(acid)G(298) = 380.2 +/- 1.0 kcal mol(-1) and Delta(acid)H(298)= 388.1 +/- 1.0 kcal mol(-1). The gas-phase acidities are combined with the electron affinities in a negative ion thermochemical cycle to determine the C5-H bond dissociation energies, D(0)(C5-H, N-methylpyrazole) = 116.4 +/- 0.7 kcal mol(-1) and D(0)(C5-H, N-methylimidazole) = 119.0 +/- 1.0 kcal mol(-1). The bond strengths reported here are consistent with previously reported bond strengths of pyrazole and imidazole; however, the error bars are significantly reduced.     

Water exchange in fluoroaluminate complexes in aqueous solution: a variable temperature multinuclear NMR study

An 17O, 19F, and 27Al NMR study of fluoroaluminate complexes (AlFn(H2O)6-n((3-n)+), n = 0, 1, and 2) in aqueous solution supports the idea that for each substitution of a bound water molecule by a fluoride anion, the exchange rate of bound water with free water increases by about 2 orders of magnitude. New rate coefficients for exchange of inner-sphere water molecules in AlF(H2O)5(2+) are kex(298) = 230(+/-20) s(-1), DeltaH(dagger) = 65(+/-3) kJ mol(-1), and DeltaS(dagger) = 19(+/-10) J mol(-1) K(-1). The corresponding new values for the AlF2(H2O)4(+) complex are: kex(298) = 17 100(+/-500) s(-1), DeltaH(dagger) = 66(+/-2) kJ mol(-1), and DeltaS(dagger) = 57(+/-8) J mol(-1) K(-1). When these new results are combined with those of our previous study,(4) we find no dependence of the solvent exchange rate, in either AlF(H2O)5(2+) or AlF2(H2O)4(+), on the concentration of fluoride or protons over the range of SigmaF = 0.06-0.50 M and [H(+)] = 0.01-0.44 M. A paramagnetic shift of 27Al resonances results from addition of Mn(II) to the aqueous solution as a relaxation agent for bulk waters. This shift allows resolution of the AlFn(H2O)6-n((3-n)+) species in 27Al NMR spectra and comparison of the speciation determined via thermodynamic calculations with that determined by 27Al, 19F, and 17O NMR.     

B(C6F5)3- vs Al(C6F5)3-derived metallocenium ion pairs. Structural, thermochemical, and structural dynamic divergences

The thermodynamic and structural characteristics of Al(C6F(5)3-derived vs B(C6F5)3-derived group 4 metallocenium ion pairs are quantified. Reaction of 1.0 equiv of B(C6F5)3 or 1.0 or 2.0 equiv of Al(C6F5)3 with rac-C2H4(eta5-Ind)2Zr(CH3)2 (rac-(EBI)Zr(CH3)2) yields rac-(EBI)Zr(CH3)(+)H3CB(C6)F5)(3)(-) (1a), rac-(EBI)Zr(CH3)+H3CAl(C6F5)(3)(-) (1b), and rac-(EBI)Zr2+[H3CAl(C6F5)3](-)(2) (1c), respectively. X-ray crystallographic analysis of 1b indicates the H3CAl(C6F5)(3)(-) anion coordinates to the metal center via a bridging methyl in a manner similar to B(C6F5)3-derived metallocenium ion pairs. However, the Zr-(CH3)(bridging) and Al-(CH3)(bridging) bond lengths of 1b (2.505(4) A and 2.026(4) A, respectively) indicate the methyl group is less completely abstracted in 1b than in typical B(C6F5)3-derived ion pairs. Ion pair formation enthalpies (DeltaH(ipf)) determined by isoperibol solution calorimetry in toluene from the neutral precursors are -21.9(6) kcal mol(-1) (1a), -14.0(15) kcal mol(-1) (1b), and -2.1(1) kcal mol(-1) (1b-->1c), indicating Al(C6F5)3 to have significantly less methide affinity than B(C6F5)3. Analogous experiments with Me2Si(eta5-Me4C5)(t-BuN)Ti(CH3)2 indicate a similar trend. Furthermore, kinetic parameters for ion pair epimerization by cocatalyst exchange (ce) and anion exchange (ae), determined by line-broadening in VT NMR spectra over the range 25-75 degrees C, are DeltaH++(ce) = 22(1) kcal mol(-1), DeltaS++(ce) = 8.2(4) eu, DeltaH++(ae) = 14(2) kcal mol(-1), and DeltaS++(ae) = -15(2) eu for 1a. Line broadening for 1b is not detectable until just below the temperature where decomposition becomes significant ( approximately 75-80 degrees C), but estimation of the activation parameters at 72 degrees C gives DeltaH++(ce) approximately 22 kcal mol(-1)and DeltaH++(ae) approximately 16 kcal mol(-1), consistent with the bridging methide being more strongly bound to the zirconocenium center than in 1a.