The influence of alkyl chain substitution pattern on the two- and three-dimensional self-assembly of truxenone discogens

The synthesis of new discotic liquid crystals and the study of self-assembly behaviours are important for the supramolecular chemistry and organic electronics. Six new truxenone discogens 7a–f with different alkyl chain substitution patterns were synthesised and all exhibited only one three-dimensional ordered hexagonal columnar mesophase with wide temperature ranges including room temperature, which were characterised with polarising optical microscopy, differential scanning calorimetry and X-ray diffraction. The self-assembly behaviours in solutions were studied by using concentration-variation ¹H NMR and scanning electron microscopy. The two-dimensional ordered self-assembly of 7c and 7f on the liquid–solid interface of highly oriented pyrolytical graphite were imaged by scanning tunnelling microscopy, and the results showed that the two-dimensional monolayer self-assembled structures on the atomically flat surfaces can be controlled by the peripheral alkyl chain substitution patterns.     

A two-dimensional molecular network structure of trimesic acid prepared by adsorption-induced self-organization

A two-dimensional molecular network of trimesic acid on Au(111) was visualized by in situ scanning tunneling microscopy with submolecular resolution. The supramolecular structures including an 'order to order' phase transition were constructed by precise potential-controlled adsorption based on adsorption-induced self-organization.     

Structural Transformation of 2,7-Dibromopyrene on Au(111) Mediated by Halogen-Bonding Motifs

Fundamental understanding of the bonding motifs that elaborately mediate the formation of supramolecular nanostructures is essential for the rational design of stable artificial organic architectures. Herein, the structural transformation of the adsorption complex of 2, 7-dibromopyrene (Br₂Py) on the Au(111) surface has been investigated by scanning tunnelling microscopy combined with X-ray photoemission spectroscopy and density function theory calculations. In the initial stage of self-assembly, well ordered patterns are formed in the manner of extended supramolecular structures balanced by intermolecular halogen bonding motifs, whilst the Au(111) reconstruction is still fairly visible. Subsequent thermal annealing promotes the dehalogenation and on-surface Ullmann coupling, and polymerized oligomers are consequently constructed. Interestingly, such polymerized chains are still stably mediated by the halogen bonding motif via dissociated Br atoms which are revealed to be absorbed on the bridge site of Au(111), while the number of halogen bonds increases significantly from self-assembly to Ullmann coupling polymerization, indicating that the halogen bonding motif contributes significantly to the extended one-dimensional polymers.     

Polymorphic porous supramolecular networks mediated by halogen bonds on Ag(111)

Intermolecular structures of porous two-dimensional supramolecular networks are studied using scanning tunnelling microscopy combined with density functional theory calculations. The local configurations of halogen bonds in polymorphic porous supramolecular networks are directly visualized in support of previous bulk crystal studies.     

On-Surface Assembly of Au-Dicyanoanthracene Coordination Structures on Au(111)

On-surface metal-organic coordination provides a promising way for synthesizing different two-dimensional lattice structures that have been predicted to possess exotic electronic properties. Using scanning tunneling microscopy (STM) and spectroscopy (STS), we studied the supramolecular self-assembly of 9,10-dicyanoanthracene (DCA) molecules on the Au(111) surface. Close-packed islands of DCA molecules and Au-DCA metal-organic coordination structures coexist on the Au(111) surface. Ordered DCA₃Au₂ metal-organic networks have a structure combining a honeycomb lattice of Au atoms with a kagome lattice of DCA molecules. Low-temperature STS experiments demonstrate the presence of a delocalized electronic state containing contributions from both the gold atom states and the lowest unoccupied molecular orbital of the DCA molecules. These findings are important for the future search of topological phases in metal-organic networks combining honeycomb and kagome lattices with strong spin-orbit coupling in heavy metal atoms.     

Cyclotrimerization‐Induced Chiral Supramolecular Structures of 4‐Ethynyltriphenylamine on Au(111) Surface

Cyclotrimerization‐induced chiral supramolecular structures of 4‐ethynyltriphenylamine (ETPA) have been synthesized on the Au(111) surface through alkyne‐based reactions. Whereas the ETPA molecules adsorbed on the Au(111) surface remain inert and form a close‐packed self‐assembled structure at room temperature, the combination of scanning tunneling microscopy observations and theoretical calculations unambiguously reveal that the ETPA molecules cyclotrimerize to form new trimer‐like species—1,3,5‐tris[4‐(diphenylamino)phenyl]benzene (TPAPB)—after annealing at 323 K. Further annealing drives these cyclotrimerized TPAPB molecules to form chiral hexagonal supramolecular structures with an extraordinary self‐healing ability.     

Self-organization of a self-assembled supramolecular rectangle, square, and three-dimensional cage on Au111 surfaces

The structure and conformation of three self-assembled supramolecular species, a rectangle, a square, and a three-dimensional cage, on Au111 surfaces were investigated by scanning tunneling microscopy. These supramolecular assemblies adsorb on Au111 surfaces and self-organize to form highly ordered adlayers with distinct conformations that are consistent with their chemical structures. The faces of the supramolecular rectangle and square lie flat on the surface, preserving their rectangle and square conformations, respectively. The three-dimensional cage also forms well-ordered adlayers on the gold surface, forming regular molecular rows of assemblies. When the rectangle and cage were mixed together, the assemblies separated into individual domains, and no mixed adlayers were observed. These results provide direct evidence of the noncrystalline solid-state structures of these assemblies and information about how they self-organize on Au111 surfaces, which is of importance in the potential manufacturing of functional nanostructures and devices.     

Novel self-assembled monolayers of disulfides with bicyclo[2.2.2]octane moieties of Au(111)

A series of disulfides containing bicyclo[2.2.2]octane moieties have been synthesised and their self-assembled monolayers (SAMs) on Au(111) have been characterized using scanning tunnelling microscopy (STM).     

Chiral structures of 6,12-dibromochrysene on Au(111) and Cu(111) surfaces

Nanoscale low-dimensional chiral architectures are increasingly receiving scientific interest, because of their potential applications in many fields such as chiral recognition, separation and transformation. Using 6,12-dibromochrysene (DBCh), we successfully constructed and characterized the large-area two-dimensional chiral networks on Au(111) and one-dimensional metal-liganded chiral chains on Cu(111) respectively. The reasons and processes of chiral transformation of chiral networks on Au(111) were analyzed. We used scanning tunneling spectroscopy (STS) to analyze the electronic state information of this chiral structure. This work combines scanning tunneling microscopy (STM) with non-contact atomic force microscopy (nc-AFM) techniques to achieve ultra-high-resolution characterization of chiral structures on low-dimensional surfaces, which may be applied to the bond analysis of functional nanofilms. Density functional theory (DFT) was used to simulate the adsorption behavior of the molecular and energy analysis in order to verify the experimental results.     

Structural comparison of self-organized adlayers of ligands and their metal-coordinated complexes on a Au(111) surface: an STM study

Scanning tunneling microscopy (STM) was employed to investigate the adsorption of the linear-spacer-bridged ligands bis(pyrrol-2-yl-methyleneamine) (BPMB and BPMmB), and their Zn(II)-coordinated complexes, BPMB/Zn(II) and BPMmB/Zn(II), onto a Au(111) surface in 0.1 M HClO(4) solution. Both the ligands, with different spacer bridges, and their Zn(II) complexes adsorb onto the Au(111) surface and self-organize into highly ordered two-dimensional arrays. The complexes BPMB/Zn(II) and BPMmB/Zn(II) appear in helical and triangular conformations, respectively, consistent with their chemical structures. Although the metal complexes include ligands, the assembled structures and adlayer symmetries of the ligands and complexes are totally different. The structures and intramolecular features obtained by high-resolution STM imaging are discussed. The results should be important in fabricating surface supramolecular structures.     

Adsorption and desorption processes of self-assembled monolayers studied by surface-sensitive microscopy and spectroscopy

Adsorption and desorption processes of self-assembled monolayers (SAMs) have been studied on an Au(111) surface by scanning tunnelling microscopy (STM), atomic force microscopy (AFM), X-ray photo-electron spectroscopy (XPS) and thermal desorption spectroscopy (TDS). At the initial growth stage, the ordered nucleation of SAM located at the herringbone turns of the Au(111) − (22 × √3) surface reconstruction and diffusion-controlled domain formation have been imaged by STM and AFM. Details of the oxidation process in UV desorption were also investigated by XPS. In addition, the dimerization reaction during desorption was confirmed by TDS for the first time in the alkanethiol SAM system.     

The interfaces of Au(111) and Au(100) in a hexaalkyl-substituted guanidinium ionic liquid: an electrochemical and in situ STM study

Five hexaalkylguanidinium-based ionic liquids have been synthesised, and based on their cyclic voltammograms the most suited one, N,N-dibutyl-N',N'-diethyl-N',N'-dimethylguanidinium bis(trifluoromethylsulfonyl)imide, has been chosen for electrochemical studies. The surface interaction of this room-temperature ionic liquid with single crystalline gold surfaces (Au(100) and Au(111)) has been investigated using cyclic voltammetry, impedance spectroscopy and in situ scanning tunnelling microscopy (STM). The interfacial capacitance was found to be very low; STM measurements revealed the hex-reconstruction and herringbone reconstruction for Au(100) and for Au(111), respectively, at negative potentials; that is, at these potentials no hints for ad-structures of the cation could be found.     

Electrochemistry of complex molecular and biomolecular scale entities

Structural mapping of intermediate size and large molecules and biomolecules at ultra-high resolution using single-crystal electrodes and in situ scanning tunnelling microscopy continues to disclose surprising findings. In situ scanning tunnelling spectroscopy has also recently disclosed new electrochemical conductivity features at the level of the single molecule. We overview briefly elements of this development over the last few years, with focus on three recent discoveries: (1) a new packing mode of a core monolayer target thiol, the amino acid cysteine (Cys) on Au(100)-electrodes, quite different from Cys packing on Au(111)- and Au(110)-electrodes; (2) transition of a core ferrocene in situ scanning tunnelling spectroscopy probe from stochastic single-molecule to macroscopic behaviour, a concept at the heart of nanoscience; and (3) unexpected behaviour of the large molybdenum enzyme sulfite oxidase, when going from macroscopic to single-molecule electrochemistry. We compare these studies with other recent discoveries of single-molecule protein conductivity and molecular scale inorganic nanostructures.     

Chiral recognition at one-dimensional metal-organic coordination networks initiates the ordering of prochiral catalytic reagent methylacetoacetate on Au{111}

A scanning tunnelling microscopy investigation is reported of the adsorption of methylacetoacetate on Au{111} surfaces templated by the growth of 1-D chains of nickel pyroglutamate. The symmetry of the Au{111}-herringbone reconstruction and the chirality of the pyroglutamate species influence the preferred growth directions of pyroglutamate chains. The interaction of methylacetoacetate with the various chain types reveals details of the symmetry and conformation of the chains. In addition, the docking of methylacetoacetate initiates the growth of ordered domains of methylacetoacetate not observed on either Au{111} or Ni/Au{111} surfaces. The possibilities to utilize such chiral recognition and amplification effects in the design of enantioselective heterogeneous catalysts are discussed.     

On-Surface Assembly of Hydrogen- and Halogen-Bonded Supramolecular Graphyne-Like Networks

Demonstrated here is a supramolecular approach to fabricate highly ordered monolayered hydrogen- and halogen-bonded graphyne-like two-dimensional (2D) materials from triethynyltriazine derivatives on Au(111) and Ag(111). The 2D networks are stabilized by N⋅⋅⋅H−C(sp) bonds and N⋅⋅⋅Br−C(sp) bonds to the triazine core. The structural properties and the binding energies of the supramolecular graphynes have been investigated by scanning tunneling microscopy in combination with density-functional theory calculations. It is revealed that the N⋅⋅⋅Br−C(sp) bonds lead to significantly stronger bonded networks compared to the hydrogen-bonded networks. A systematic analysis of the binding energies of triethynyltriazine and triethynylbenzene derivatives further demonstrates that the X₃-synthon, which is commonly observed for bromobenzene derivatives, is weaker than the X₆-synthon for our bromotriethynyl derivatives.     

On-Surface Synthesis of Iron Phthalocyanine Using Metal-Organic Coordination Templates

On-surface synthesis provides a convenient route to many kinds of conjugated molecular nanostructures, but it has remained challenging to precisely control the reaction pathway for using multicomponent precursors. Herein, we demonstrate a two-step strategy to synthesize iron phthalocyanine (FePc) molecules using metal-organic coordination for templating by using high-resolution scanning tunnelling microscopy and non-contact atomic force microscopy. In a first step, 1,2,4,5-tetracyanobenzene (TCNB) precursors and Fe atoms self-assembly into Fe(TCNB)₄ coordination complexes on a clean Au(111) surface. The Fe(TCNB)₄ complexes further undergo cyclic tetramerization upon thermal annealing, forming single FePc molecules. We expect that our demonstrated synthetic strategy may shed light on the design and synthesis of two-dimensional extended conjugated systems.     

Orientational ordering of the second layer of C60 molecules on Au(111)

We have studied the orientational ordering of the second layer of C(60) molecules on Au(111) using scanning tunnelling microscopy (STM) at 77 K. The orientation of individual molecules within the second layer follows a regular pattern, giving rise to a 2 × 2 superlattice. The long-range order of the 2 × 2 lattice depends on the structure of the first molecular layer with the best ordering found inside the R14° domain. The second layer formed on top of the contrast-disordered R30° domain consists of patches of bright and dim molecules. The contrast between bright and dim patches shows a clear dependence on the sample bias. This bias-dependent contrast is explained by considering the contributions to tunnel current from HOMO and LUMO mediated electron transfer processes. Scanning tunnelling spectroscopic measurement reveals the narrowing of the HOMO-LUMO gap for the layer of molecules in direct contact with the Au(111) substrate.     

Addressing metal centres in supramolecular assemblies

Supramolecular metal ion assemblies are deposited from their solutions onto highly orientated pyrolytic graphite (HOPG) substrates to be imaged by scanning tunnelling microscopy (STM). Since the structural and electronic information of STM measurements are strongly entangled, the spectroscopic interpretation and analysis of the images of such molecular assemblies has proven to be challenging. This tutorial review focuses on a general room temperature scanning tunnelling spectroscopy (STS) protocol, current induced tunnelling spectroscopy (CITS), applied to free-standing 1D and 2D arrangements of supramolecular metal ion assemblies rendering local tunnelling probabilities with submolecular resolution. The size of the investigated molecular assemblies was confirmed by comparison with X-ray crystallographic data, while the consistency of the spectroscopic investigations and of the determined positions of the metal ions within the assemblies was checked by DFT calculations. Due to the genuine level structure of coordinated metal centers, it was possible to map exclusively the position of the coordination bonds in supramolecular transition metal assemblies with submolecular spatial resolution using the CITS technique. CITS might thus constitute an important tool to achieve directed bottom-up construction and controlled manipulation of fully electronically functional, two-dimensional molecular designs.     

Supramolecular pattern of fullerene on 2D bimolecular "chessboard" consisting of bottom-up assembly of porphyrin and phthalocyanine molecules

Two-component adlayers consisting of zinc(II) phthalocyanine (ZnPc) and a metalloporphyrin, such as zinc(II) octaethylporphyrin (ZnOEP) or zinc(II) tetraphenylporphyrin (ZnTPP), were prepared by immersing either an Au(111) or Au(100) substrate in a benzene solution containing those molecules. The bimolecular adlayers thus prepared were investigated in 0.1 M HClO4 by cyclic voltammetry (CV) and electrochemical scanning tunneling microscopy (EC-STM). A supramolecularly organized "chessboard" structure was formed for the ZnPc and ZnOEP bimolecular array on Au(111), while characteristic nanohexagons were found in the ZnTPP and ZnOEP bimolecular adlayer. EC-STM revealed that the surface mobility and the molecular re-organization of ZnPc and ZnOEP on Au(111) were tunable by manipulating the electrode potential, whereas the ZnTPP and ZnOEP bimolecular array was independent of the electrode potential. A "bottom-up" hybrid assembly of fullerene molecules was formed successfully on an alternate array of bimolecular ZnPc and ZnOEP molecules. The bimolecular "chessboard" served as a template to form the supramolecular assembly of C60 by selective trapping in the open spaces. A supramolecular organization of ZnPc and ZnOEP was also found on the reconstructed Au(100)-(hex) surface. A highly ordered, compositionally disordered but alternate array of ZnPc and ZnOEP was formed on the reconstructed Au(100)-(hex) surface, indicating that the bimolecular adlayer structure is dependent on the atomic arrangement of underlying Au in the formation of supramolecular nanostructures composed of those molecules. On the bimolecular array consisting of ZnPc and ZnOEP on the Au(100)-(hex), no highly ordered supramolecular assembly of C60 was found, suggesting that the supramolecular assembly of C60 molecules is strongly dependent upon the bimolecular packing arrangement of ZnPc and ZnOEP.     

ECSTM针尖诱导构筑Au表面有序Pd纳米粒子阵列

利用电化学扫描隧道显微镜(ECSTM)在温和的电化学和隧道偏压的条件下诱导电极表面发生特定的局域电化学反应, 在Au(111)单晶电极表面构筑了Pd纳米粒子的阵列. 研究了两种不同的溶液体系(PdCl2和PdSO4)构筑纳米粒子所需设定的不同参数, 同时探讨了选择不同参数的原因.