HPLC–MS determination of the oxidation products of the reaction between α- and β-pinene and OH radicals

Biogenic non-methane hydrocarbons such as isoprene, alpha-pinene, and beta-pinene, are emitted by forests in very large quantities. To evaluate the role of alpha- and beta-pinene and their contribution to the global production of trace gases and especially aerosol precursors, a study of the oxidation mechanism of alpha- and beta-pinene with hydroxyl radicals must be conducted.The degradation products of both monoterpenes with hydroxyl radicals were identified and quantified in a fast-flow reactor. The products were collected on a liquid-nitrogen trap coated with a 2,4-DNPH solution to which two internal standards (benzaldehyde-2,4-DNPH and tolualdehyde-2,4-DNPH) had been added. The collection method was based on the in situ conversion of aldehyde and/or ketone compounds to their 2,4-dinitrophenylhydrazone derivatives. The derivatives were analyzed by HPLC-MS using APCI(-). TIC chromatograms and mass spectral data for the various oxidation products are presented.For alpha-pinene, pinonaldehyde is the most important degradation product, with smaller amounts of acetone, formaldehyde, campholenealdehyde, and acetaldehyde. For beta-pinene, nopinone and formaldehyde are the most abundant products, of almost equal importance, whereas acetone and acetaldehyde are minor compounds.     

Antitumor mechanism of VP-16: A pulse radiolysis study

The antitumor mechanism of etoposide (VP-16) is investigated using pulse radiolysis technology. The oxidizing mechanism of VP-16 is studied by sodium persulfate, and the reaction rate constant is 4.04× 109 L· mol-1 · s-1. The electron-transfer between VP-16 and tyrosine is observed and the reaction rate constant is 1.1 - 108 L · mol-1· s-1.     

Kinetics and mechanism of thermal gas-phase elimination of α- and β- (N-arylamino)propanoic acid: experimental and theoretical analysis

2-(N-Phenylamino)propanoic acid 1a and 3-(N-phenylamino)-propanoic acid 2a together with four of their aryl analogues were pyrolysed in the gas-phase. The reactions were homogeneous and free from catalytic and radical pathways. Analysis of the pyrolysate of 1 showed the elimination products to be carbon monoxide, acetaldehyde and aniline, while the pyrolysate of 2 reveals the formation of acrylic acid in addition to aniline. Theoretical study of the pyrolysis of 2 using an ab initio SCF method lend support to a reaction pathway involving a 4-membered cyclic transition state.     

Reexamination of the π-bond strengths within H2C=XHn systems: a theoretical study

The accurate determination of π-bond energies, D(π), in doubly-bonded species has been an important issue in theoretical chemistry. The procedure using the divalent state stabilization energy defined by Walsh has been suggested, and the procedure seems to be conceptually reasonable and applicable to all kinds of doubly-bonded species. Therefore, the aim of this study was to examine whether the procedure could be a reliable methodology for estimating the D(π) values for a variety of H(2)C=XH(n) species. To achieve a higher accuracy, the D(π) values were estimated at QCISD(T)/6-311++G(3df,2p) level of theory combined with isogyric correction. The D(π) values estimated in this work were in excellent agreement with the extant literature values. On the other hand, in determining accurate D(π) values for doubly bonded species, especially in species with lone-pair electrons such as H(2)C=O, it has been found that consideration of highly sophisticated electron correlation effects could be important. However, sufficiently accurate D(π) values have been obtainable at QCISD(T) or CCSD(T) levels with a 6-311++G(3df,2p) basis set on geometries at relatively inferior correlated levels such as MP2 and B3LYP levels with a 6-31+G(d) basis set.     

Aerobic oxidation of β-isophorone catalyzed by N-hydroxyphthalimide: the key features and mechanism elucidated

Due to the insufficient understanding of the selective oxidation mechanism of α/β-isophorones (α/β-IP) to ketoisophorone (KIP), the key features in the β-IP oxidation catalyzed by N-hydroxyphthalimide (NHPI) have been explored via theoretical calculations. β-IP is more favourable to being activated by phthalimide-N-oxyl radical (PINO˙) and peroxyl radical (ROO˙) than α-IP owing to the different C-H strengths at their reactive sites, thereby exhibiting selective product distributions. It was found that NHPI accelerates β-IP activation due to the higher reactivity of PINO˙ than ROO˙ and the equilibrium reaction between them, yielding considerable hydroperoxide (ROOH) and ROO˙. In addition, the ROOH decomposition is more favourable viaα-H abstraction by radicals than its self-dehydration and thermal dissociation. The strong exothermicity of this α-H abstraction, along with that from H-abstraction by co-yielded hot HO˙, is in favor of the straightforward formation of KIP, simultaneously leading to the isomerization of a few β-IP to α-IP and production of 4-hydroxyisophorone (HIP) and water. The proposed mechanisms, consistent with the experimental observations, allow for the deeper understanding and effective design of oxidation systems involving similar substrates or NHPI analogues that are of industrial importance.     

A theoretical study of the XP and NEXAFS spectra of alanine: gas phase molecule, crystal, and adsorbate at the ZnO(10 ̅10) surface

The adsorption of alanine on the mixed-terminated ZnO(10 ?10) surface is studied by means of quantum-chemical ab initio calculations. Using a finite cluster model and the adsorption geometry as obtained both by periodic CPMD and embedded cluster calculations, the C1s, N1s and O1s X-ray photoelectron spectra (XPS) and near-edge X-ray absorption fine structure (NEXAFS) spectra are calculated for single alanine molecules on ZnO(10 ?10). These spectra are compared with the spectra calculated for alanine in the gas phase and in its crystalline form and with experimental XPS and NEXAFS data for the isolated alanine molecule and for alanine adsorbed on ZnO(10 ?10) at multilayer and monolayer coverage. The excellent agreement between the experimental and calculated XP and NEXAFS spectra confirms the calculated adsorption geometry: A single alanine molecule is bound to ZnO(10 ?10) in a dissociated bidentate form with the two O atoms of the acid group bound to two Zn atoms of the surface and the proton transferred to one O atom of the surface. Other possible structures, such as adsorption of alanine in one of its neutral or zwitterionic forms in which the proton of the -COOH group remains at this group or is transferred to the amino group, can be excluded since they would give rise to quite different XP spectra. In the multilayer coverage regime, on the other hand, alanine is in its crystalline form as is also shown by the analysis of the XP spectra.     

Is the hypothiocyanite anion (OSCN)- the major product in the peroxidase catalyzed oxidation of the thiocyanate anion (SCN)-? A joint experimental and theoretical study

The hypothiocyanate anion (OSCN)(-) is reported to be a major product of the lactoperoxidase/H(2)O(2)/(SCN)(-) system, and this anion is proposed to have significant antimicrobial properties. The collision induced (CID) negative ion mass spectrum of "(OSCN)(-)" has been reported: there is a pronounced parent anion at m/z 74, together with fragment anions at m/z 58 (SCN)(-) and 26 (CN)(-). These fragment anions are consistent with structure (OSCN)(-). However there is also a lesser peak at m/z 42 (OCN(-) or CNO(-)) in this spectrum which is either formed by rearrangement of (OSCN)(-) or from an isomer of this anion. The current theoretical investigation of (OSCN)(-) and related isomers, together with the study of possible rearrangements of these anions, indicates that ground-state singlet (OSCN)(-) is a stable species and that isomerization is unlikely. The three anions (OSCN)(-), (SCNO)(-), and (SNCO)(-) have been synthesized (in the ion source of a mass spectrometer) by unequivocal routes, and their structures have been confirmed by a consideration of their collision induced (negative ion) and charge reversal (positive ion) mass spectra. The CID mass spectrum of (SCNO)(-) shows formation of m/z 42 (CNO(-)), but the corresponding spectra of (OSCN)(-) or (SNCO)(-) lack peaks at m/z 42. Combined theoretical and experimental data support earlier evidence that the hypothiocyanite anion is a major oxidation product of the H(2)O(2)/(SCN)(-) system. However, the formation of m/z 42 in the reported CID spectrum of "(OSCN)(-)" does not originate from (OSCN)(-) but from another isomer, possibly (SCNO)(-).     

The first C(O)NHP(O)-based phosphoric triamide structure with an N‒H···π hydrogen bonding: A combination of X-ray crystallography and theoretical study to evaluate the strength of hydrogen bonds

The hydrogen bond pattern of N-(4-methoxybenzoyl)-N′,N″-bis(4-methylbenzyl)-phosphoric triamide, C₂₄H₂₈N₃O₃P, (I), was investigated. In the crystal structure, the molecules are aggregated through N_CP―H···O═P and N_P―H···O═C hydrogen bonds in a one-dimensional arrangement parallel to the c axis (N_CP is the nitrogen atom in the C(O)NHP(O) segment and N_P stands for the two other nitrogen atoms bonded to the P atom). There is also a novel N_P?H···π hydrogen bond in the crystal which extends the aggregation of the molecules to a two-dimensional array parallel to the bc plane. A Cambridge Structural Database (CSD, version 5.37, Feb 2016) analysis shows that the N―H···π hydrogen bond was not observed in any of 156 [RC(O)NH]P(O)[NR¹R² Allen, F. H.; Taylor, R. Chem. Soc. Rev. 2004, 33, 463-475.[Crossref], [PubMed], [Web of Science ®] , [Google Scholar]]₂ (R¹ ≠ H, R² = H or ≠ H) phosphoric triamide structures reported so far. The theoretical calculations at the B3LYP/6-311G^** level of theory (DFT, AIM, and NBO) were performed to evaluate the strengths of N_CP―H···O═P, N_P―H···O═C and N_P―H···π hydrogen bonds, considering two-aggregate molecular assemblies containing these hydrogen bonds. The calculations on the title compound suggest that the intermolecular N_CP―H···O═P hydrogen bond is stronger than N_P―H···O═C and N_P―H···π interactions. The hydrogen bond strength was investigated by NBO, topological analysis, geometry calculation, Hirshfeld surface analysis and experimental spectroscopic results, which are in agreement with each other.     

A theoretical study of beta-sheet models: is the formation of hydrogen-bond networks cooperative?

The cooperativity in terms of enthalpy contribution for beta-sheet formation of polyglycine models in a vacuum has been studied theoretically by using a repeating unit approach. No cooperativity is found in the parallel direction for both the parallel and antiparallel beta-sheets. Cooperativity in the perpendicular direction is dependent upon the residue number (m) in each beta-strand. While there is large cooperativity in the acetamide hydrogen-bond chain (m = 0), the cooperativity is not large in beta-sheet networks (m > 0). SCIPCM solvent model calculations also significantly reduce the cooperativity in hydrogen-bond chains. It is concluded that cooperativity is mainly due to long-range electrostatic interactions and not due to the resonance effect.     

A study of the mechanism of rhodium/phosphine-catalyzed hydroformylation: use of 1,1′-bis(diarylphosphino)ferrocene ligands

Rhodium/phosphine-catalyzed hydroformylation was studied using 1,1′-bis(diphenylphosphino)ferrocene and several derivatives containing substituents on the phenyl groups (p-Cl, m-F, and p-CF₃). The results with these disphosphine ligands suggest that the operative mechanism differs in several ways from the accepted mechanism for hydroformylation catalyzed by Rh/Ph₃P. The most important difference is that the most selective catalyst has three phosphorus atoms bound to each rhodium atom and is postulated to be a dirhodium complex. Using these ligands, selectivities to products were correlated by a Hammett σ-ϱ plot, with electron-withdrawing groups (less basic ligands) affording higher rates and higher linear : branched aldehyde ratios. This confirms previous work which qualitatively indicated that the linear : branched ratio increases as ligand basicity decreases.     

A second generation pyranose-based approach to the F ring (C38–C45) of altohyrtin A

A second generation approach to the F ring, fragment C38–C45, of altohyrtin A (1) is described herein. The C43–C44 C-glycosidic linkage was prepared and subsequently functionalised with a thioketal moiety.     

Formation of C4H4(•+) from the pyridine radical cation: a theoretical mechanistic and kinetic study

The potential energy surface (PES) for the formation of C(4)H(4)(?+) from the pyridine radical cation by loss of HCN was determined from quantum chemical calculations using the G3//B3LYP method. The complete reaction pathways for the formation of the low-energy C(4)H(4)(?+) isomers, radical cations of methylenecyclopropene (MCP(?+)), vinylacteylene (VA(?+)), cyclobutadiene, and butatriene were obtained. Based on the PESs, a Rice-Ramsperger-Kassel-Marcus model calculation was performed to investigate the dissociation kinetics. The calculated dissociation rate constants agreed with the previous experimental data. It was predicted that a mixture of MCP(?+) and VA(?+) was formed by loss of HCN. The formation of MCP(?+) was more favored near the dissociation threshold and at high energies, whereas the formation of VA(?+) was more favored at the low energies corresponding to the ion lifetime of microseconds.     

Computational study on the reaction mechanism of the gas-phase atom-negative ion of S?+?NO2 ?: comparative study of mechanism with S?+?O3 reaction as isoelectronic and isostructure systems

The reaction mechanism of sulfur vapor (S) with nitrite ion (NO₂ ⁻) has been investigated theoretically on the triplet and singlet potential energy surfaces (PESs). All stationary points for the title reaction have been optimized at the B3LYP/6-311+G(3df) level. The energetic data have been obtained at the CCSD(T)//B3LYP level employing the 6-311+G(3df) basis set. Five stable collision complexes, ³IN1 (S–ONO⁻), ³IN2 (cyclic SONO⁻), ¹IN1 (cis S–ONO⁻), ¹IN2 (S–NO₂ ⁻), and ¹IN3 (trans S–ONO⁻), have been considered on the triplet and singlet PESs through barrier-less and exothermic processes. By starting from these complexes, a simple mechanism has been obtained on the triplet PES while a complex mechanism has been considered on the singlet PES. The calculated results show that there are no favorable paths for the reaction of S with NO₂ ⁻ on the singlet PES. Therefore, the S + NO₂ ⁻ reaction proceeds only on the triplet PES to produce ³SO + ³NO⁻ as main products. The results from the comparative study of S + NO₂ ⁻ reaction mechanism with S + O₃ (as isoelectronic and isostructure reactions) on the singlet PES show similarities in the overall trend of reaction mechanism and atom connectivity and differences in the stability of intermediates and the energy barriers of transition states.     

A DFT investigation of the retro-ene reactions of β-hydroxyacetylenes: concerted or stepwise mechanism

Structural Chemistry - The retro-ene reactions of β-hydroxyacetylene and its 10 derivatives have been investigated theoretically at the B3LYP/6-31+G(d) level. The reactions are found to...     

A theoretical insight into the deactivating reactions of triplet excited state C60 by β-carotene

By means of quantum chemical calculations, the deactivating reactions of triplet excited state C₆₀ by β-carotene were explored from the thermodynamic point of view. The solvent effect on the deactivating mechanisms was also discussed. Primarily, the energy transfer from triplet excited state C₆₀ to β-carotene is feasible both in benzene and water. Secondly, β-carotene may also deactivate triplet excited state C₆₀ through electron transfer from ground state β-carotene to triplet excited state C₆₀ or from triplet excited state β-carotene to triplet excited state C₆₀ in water, while only the latter pathway is thermodynamically favorable in benzene.     

Kinetics and mechanism of the oxidation of DL-methionine bybis(2,2′-bipyridyl)copper(II) permanganate

Summary The oxidation ofDL-methionine (MT) bybis(2,2-bipyridyl)copper(II) permanganate (BBCP) to the corresponding sulphoxide is first order in BBCP. Michaelis-Menten-type kinetics were observed with respect to MT. The formation constant of the intermediate complex and the rate constant for its decomposition were evaluated. The thermodynamic and activation parameters were also evaluated. The reaction is catalysed by H⁺ but 2,2-bipyridine does not affect the reaction rate. A mechanism is proposed.     

Complexes of α-, β-, and γ-cyclodextrins with nitrophenols: A theoretical study of the structure and energy

Detailed quantum mechanical calculations of the interaction of cyclodextrin (α-, β-, and γ-CD) with 4-nitrophenol (I), 4-nitro-2,6-dimethylphenol (II), 4-nitro-3,5-dimethylphenol (III), and their anions (IVVI) with the formation of intercalation complexes are carried out for the first time. The calculations of the compounds are performed within the density functional theory by the hybrid Becke–Lee–Yang–Parr (B3LYP) method with LanL2DZ basis sets. For the α-CD+III and α-CD+VI complexes it is shown that a nitrophenol molecule of III and a nitrophenolate anion of VI are not contained in the α-CD torus, which agrees with the experimental equilibrium constants. It is found that the calculated equilibrium constants of the formation of guest–host complexes with phenolate anions are much larger than those of neutral molecules. The most stable CD complexes with nitrophenols and their anions should be expected for γ-CD. The β-CD complexes when the guest enters into the host cavity are formed only with compounds I, V, and VI.     

A kinetic study of the aqueous phase oxidation of di-μ-oxo-bis(L-cysteine)-oxomolybdenum(V) by molecular oxygen

The molecular oxygen-mediated decomposition of the binuclear complex, prepared from oxomolybdate(V) and L-(+)-cysteine, was studied spectrophotometrically at pH 3.5–5.6. The formation of MoVI was detected. The effects of pH and [O2] on the decomposition kinetics are given by the equation: