Substituent effects in the benzene dimer are due to direct interactions of the substituents with the unsubstituted benzene

The prevailing views of substituent effects in the sandwich configuration of the benzene dimer are flawed. For example, in the polar/pi model of Cozzi and co-workers (J. Am. Chem. Soc. 1992, 114, 5729), electron-withdrawing substituents enhance binding in the benzene dimer by withdrawing electron density from the pi-cloud of the substituted ring, reducing the repulsive electrostatic interaction with the nonsubstituted benzene. Conversely, electron-donating substituents donate excess electrons into the pi-system and diminish the pi-stacking interaction. We present computed interaction energies for the sandwich configuration of the benzene dimer and 24 substituted dimers, as well as sandwich complexes of substituted benzenes with perfluorobenzene. While the computed interaction energies correlate well with sigmam values for the substituents, interaction energies for related model systems demonstrate that this trend is independent of the substituted ring. Instead, the observed trends are consistent with direct electrostatic and dispersive interactions of the substituents with the unsubstituted ring.     

Macroscopic and mesoscopic patterns observed in thin films formed due to polymerization of aniline at the air-water interface

We report two-dimensional mesoscopic and macroscopic patterns observed in thin films formed due to polymerization of aniline at the air-water interface. The polymerization at the interface was coupled to a reaction in the bulk medium that was either an iron (ferroin)-catalyzed Belousov-Zhabotinsky (BZ) reaction or another reaction condition where the ferroin component of BZ reaction was replaced by FeSO(4) or Mohr's salt [(NH(4))(2)SO(4).FeSO(4).6H(2)O]. Also, a simple mixture of KBrO(3) and KBr in aqueous acidic solution produced patterned polymers at the interface, observed with aniline introduced from both the vapor phase and the bulk phase (by dissolving in H(2)SO(4)). Observation under an optical microscope revealed that the macroscopic patterns consisted of mesoscopic patterns of various geometrical shapes. In one case, regular circular mesoscopic patterned polymer growth was observed when the reaction was carried out in the presence of 2.02 mM sodium dodecyl sulfate. On the other hand, when the film was grown in an ultrasonicator bath there were no observable mesoscopic or macroscopic patterns in the film.     

Spectroscopic analysis of bacterial biological warfare simulants and the effects of environmental conditioning on a bacterial spectrum

The ability to distinguish bacteria from mixed samples is of great interest, especially in the medical and defence arenas. This paper reports a step towards the aim of differentiating pathogenic endospores in situ, to aid any required response for hazard management using infrared spectroscopy combined with multivariate analysis. We describe a proof-of-principle study aimed at discriminating biological warfare simulants from common environmental bacteria. We also report an evaluation of multiple pre-processing techniques and subsequent differences in cross-validation of two pattern recognition models (Support Vector Machines and Principal Component–Linear Discriminant Analysis) for a six-class classification (bacterial classification). These classifications were possible with an average sensitivity of 88.0 and 86.9?%, and an average specificity of 97.6 and 97.5?% for the SVM and the PC-LDA models, respectively. Most spectroscopic models are built upon spectra from bacteria that have been specifically prepared for analysis by a particular method; this paper will comment upon the differences in the bacterial spectrum that occur between specific preparations when the bacteria have spent 30?days in the simulated weather conditions of a hot dry climate.

Acetone adsorption on ice surfaces in the temperature range T = 190-220 K: evidence for aging effects due to crystallographic changes of the adsorption sites

The rate and thermodynamics of the adsorption of acetone on ice surfaces have been studied in the temperature range T = 190-220 K using a coated-wall flow tube reactor (CWFT) coupled with QMS detection. Ice films of 75 +/- 25 microm thickness were prepared by coating the reactor using a calibrated flow of water vapor. The rate coefficients for adsorption and desorption as well as adsorption isotherms have been derived from temporal profiles of the gas phase concentration at the exit of the flow reactor together with a kinetic model that has recently been developed in our group to simulate reversible adsorption in CWFTs (Behr, P.; Terziyski, A.; Zellner, R. Z. Phys. Chem. 2004, 218, 1307-1327). It is found that acetone adsorption is entirely reversible; the adsorption capacity, however, depends on temperature and decreases with the age of the ice film. The aging effect is most pronounced at low acetone gas-phase concentrations (< or = 2.0 x 10(11) molecules/cm(3)) and at low temperatures. Under these conditions, acetone is initially adsorbed with a high rate and high surface coverage that, upon aging, both become lower. This effect is explained by the existence of initially two adsorption sites (1) and (2), which differ in nature and number density and for which the relative fractions change with time. Using two-site dynamic modeling, the rate coefficients for adsorption (k(ads)) and desorption (k(des)) as well as the Langmuir constant (K(L)) and the maximum number of adsorption sites (c(s,max)), as obtained for the adsorption of acetone on sites of types (1) and (2) in the respective temperature range, are k(ads)(1) = 3.8 x 10(-14) T(0.5) cm(3) s(-1), k(des)(1) = 4.0 x 10(11) exp(-5773/T) s(-1), K(L) (1) = 6.3 x 10(-25) exp(5893/T) cm(3), c(s,max)(1) < or = 10(14) cm(-2) and k(ads)(2) = 2.9 x 10(-15) T(0.5) cm(3) s(-1), k(des)(2) = 1.5 x 10(7) exp(-3488/T) s(-1), K(L)(2) = 5.0 x 10(-22) exp(3849/T) cm(3), c(s,max)(2) = 6.0 x 10(14) cm(-2), respectively. On the basis of these results, the adsorption of acetone on aged ice occurs exclusively on sites of type (2). Among the possible explanations for the time-dependent two-site adsorption behavior, i.e., crystallographic differences, molecular or engraved microstructures, or a mixture of the two, we tentatively accept the former, i.e., that the two adsorption sites correspond to cubic (1, I(c)) and hexagonal (2, I(h)) sites. The temporal change of I(c) to I(h) and, hence, the time constants of aging are consistent with independent information in the literature on these phase changes.     

An NQR study of the effects on the torsional oscillations of a molecular crystal due to uniaxial pressures

This work reports the experimental results of the uniaxial pressure dependence at various temperatures of the spin-lattice relaxation time, T₁, in paradichlorobenzene single crystals.The directionality of the pressure dependence, together the temperature dependence ot T₁ near room temperature, give us some information about the dependence of the molecular torsional frequencies and lifetimes of the oscillations ground levels with the intermolecular crystalline potential.     

Electrical effects on the vibrational transitions of hydrogen fluoride due to hydrogen bonding and applied fields

Derivative Hartree-Fock (DHF) theory has been used to study the transition dipole moment of hydrogen fluoride in several hydrogen-bonded complexes and in the presence of applied fields. DHF is an open-ended, analytical means for finding energy derivatives with respect to any number of parameters, and large basis set calculations going through the seventh dipole hyperpolarizability (ninth derivative) are reported. Using multipole moments, multipole polarizabilities and hyperpolarizabilities, the intermolecular electrical influence on vibrational transitions is analyzed.     

Sequential formation of yellow, red, and orange 1-phenyl-3,3-biphenylene-allene dimers prior to blue tetracene formation: Helicity reversal in trans-3,4-diphenyl-1,2-bis(fluorenylidene)cyclobutane

1-Phenyl-3,3-biphenyleneallene (2), the base-catalyzed rearrangement product of 9-phenylethynylfluorene (1) yields a yellow, head-to-tail dimer 6 that, upon gentle warming, is converted to the red tail-to-tail isomer trans-3,4-diphenyl-1,2-bis(fluorenylidene)cyclobutane (7), in which the two fluorenylidene moieties severely overlap. The helical sense of the fluorenylidene moieties in 7 matches that of the phenyl substituents, and the interplanar angle between the fluorenylidene moieties is 41 degrees . At 80 degrees C, 6 isomerizes to orange cis-3,4-diphenyl-1,2-bis(fluorenylidene)cyclobutane (8), which at 110 degrees C is converted to orange trans diastereomer 9, whereby the helicity of the overlapping fluorenylidene moieties is reversed from that in 7 such that they are aligned with the ring hydrogen atoms, and the interplanar angle between the fluorenylidene moieties is now 60 degrees . At 180 degrees C, 6 rearranges to dispirodihydrotetracene 3 and blue, electroluminescent diindenotetracene 4, which is readily oxidized to peroxide 5. In the solid state, both 3 and 4 adopt structures with Ci symmetry (only an inversion center) such that the central polycyclic framework is nonplanar. Deprotonation of yellow head-to-tail allene dimer 6 with tBuOK in DMSO and reprotonation with HOAc yields the [1,3]-hydrogen migration product 10, in which the proton originally on the cyclobutane ring is now sited at C9 on the exocyclic fluorenyl substituent. Analogously, deprotonation and reprotonation of orange dimer 9 furnishes [1,3]-hydrogen migration product 11. Side product 17, formed during the synthesis of 1 from 9-phenylethynylfluoren-9-ol, BF3 and Et3SiH, was shown to be a silyl-indene spiro-linked to C9 of fluorene. All products were characterized by NMR spectroscopy and X-ray crystallography, and the mechanisms of these interconversions are discussed.     

The effects of energy sites on adsorption of Lennard-Jones fluids and phase transition in carbon slit pore of finite length a computer simulation study

A Monte Carlo simulation method is used to study the effects of adsorption strength and topology of sites on adsorption of simple Lennard-Jones fluids in a carbon slit pore of finite length. Argon is used as a model adsorbate, while the adsorbent is modeled as a finite carbon slit pore whose two walls composed of three graphene layers with carbon atoms arranged in a hexagonal pattern. Impurities having well depth of interaction greater than that of carbon atom are assumed to be grafted onto the surface. Different topologies of the impurities; corner, centre, shell and random topologies are studied. Adsorption isotherms of argon at 87.3 K are obtained for pore having widths of 1, 1.5 and 3 nm using a Grand Canonical Monte Carlo simulation (GCMC). These results are compared with isotherms obtained for infinite pores. It is shown that the surface heterogeneity affects significantly the overall adsorption isotherm, particularly the phase transition. Basically it shifts the onset of adsorption to lower pressure and the adsorption isotherms for these four impurity models are generally greater than that for finite pore. The positions of impurities on solid surface also affect the shape of the adsorption isotherm and the phase transition. We have found that the impurities allocated at the centre of pore walls provide the greatest isotherm at low pressures. However when the pressure increases the impurities allocated along the edges of the graphene layers show the most significant effect on the adsorption isotherm. We have investigated the effect of surface heterogeneity on adsorption hysteresis loops of three models of impurity topology, it shows that the adsorption branches of these isotherms are different, while the desorption branches are quite close to each other. This suggests that the desorption branch is either the thermodynamic equilibrium branch or closer to it than the adsorption branch.     

Aliphatic polyurethane as a matrix for pH sensors: effects of native sites and added proton carrier on electrical and potentiometric properties

The potentiometric and impedance characteristics of polymeric membranes, based on aliphatic polyurethane (Tecoflex) as a matrix, are described and interpreted by theory and experiments for H(+) and alkali metal ion-sensitive sensors. Both dummy plasticized membranes and proton carrier-loaded membranes can show pH response. The pH response of dummy membranes is due to protonated natural negative sites in the polyurethane matrix. The electrodes with added proton carrier show improved rejection of Li(+), Na(+), and K(+) responses and give useful analytical responses. Optimal performance requires control of negative site concentration by addition of lipophilic salt (e.g. tetraphenylborate derivatives). Impedance analyses show surface-rate semicircles and, depending on the bathing electrolyte solution, appearance of a diffusional Warburg impedance. In addition to these time-dependence surface region effects, changes in the bulk membrane resistance with soaking time can be well correlated with equilibrium water content of plasticized membranes.     

A new type of palladium(0) complex having both electron-withdrawing and -donating sites in a ligand: 5,8-dihydro- and 5,8,9,10-tetrahydro-1,4-naphthoquinone complexes

A new type of palladium(0) complex, (5,8-dihydro-1,4-naphthoquinone)Pd(PPh₃)₂ and (5,8,9,10-tetrahydro-1,4-naphthoquinone)Pd(PPh₃)₂, having both olefin and quinone or dihydro-quinone sites in a ligand molecule was prepared. IR and ¹H NMR spectroscopic studies of these complexes suggested that it is the quinone or dihydro-quinone CC bond which is complexed to Pd. Ligand exchange reactions showed that the stability order of the olefinic quinone complexes was as follows: (1,4-naphthoquinone)Pd(PPh₃)₂ > (5,8-dihydro-1,4-naphthoquinone) Pd(PPh₃)₂>(5,8,9,10-tetrahydro-1,4-naphthoquinone)Pd(PPh₃)₂.     

Use of TOF-SIMS to study adsorption and loading behavior of methylene blue and papain in a nano-porous silicon layer

TOF-SIMS was applied to study the cross-sectional distribution of methylene blue and papain in porous silicon layers. Elemental and molecular information were used to study their distributions in the porous region and the chemistry of their adsorption. Methylene blue (MW = 284 Da) penetrated to the base to the pores. Positive ions (SiCH₃⁺) suggest methylene blue binds to the substrate via its methyl groups. Negative fragments (SiOSH₃⁻ and SiO₂SCH⁻) also suggested chemisorption via O bridging of the substrate Si and methylene blue S. The larger Papain molecule (23,406 Da) distributed itself in a similar manner to methylene blue demonstrating larger molecules can be effectively incorporated into such pore structures.     

Binding affinity of a small molecule to an amorphous polymer in a solvent. Part 2: preferential binding to local sites on a surface

Crystallization, a separation and purification process, is commonly used to produce a wide range of materials in various industries, and it usually begins with heterogeneous nucleation on a foreign surface in industrial practice and most other circumstances. Recent studies show that amorphous polymeric substrates are useful in controlling crystallization and selectively producing pharmaceutical polymorphs. In our previous publication, we investigated the possible correlation of the binding affinity of one molecule to key binding sites (local binding), and the possibility of using this binding affinity to guide the selection of polymers promoting heterogeneous nucleation. The studied systems were aspirin binding to four nonporous cross-linked polymers in ethanol-water 38 v% mixture. Cross-linked with divinylbenzene (DVB), these polymers were poly(4-acryloylmorpholine) (PAM), poly(2-carboxyethyl acrylate) (PCEA), poly(4-hydroxylbutyl acrylate) (PHBA), and polystyrene (PS). We discovered that the trend of the magnitudes of the average free energies of binding to the best sites is very similar to that of heterogeneous nucleation activities. This Article aims to investigate whether or not local binding to key sites is the important variable to describe heterogeneous nucleation as opposed to the overall/average binding affinity of molecules to a surface, and to investigate the possibility of using the overall binding affinity to guide the selection of polymers. We used the polymer surfaces generated from our previous study to calculate the overall binding affinity of aspirin molecules to the surface as measured by the preferential interaction coefficients of aspirin (1 m) to these polymers. We discovered that the trend of the average preferential interaction coefficients does not correlate as well to that of heterogeneous nucleation activities as the free energies of binding to the best sites. We also computed the average numbers of aspirin molecules associated with the areas of the surfaces' best binding sites and found that they correlate better to heterogeneous nucleation activities than the average preferential interaction coefficients. These results further support that local binding is indicative of heterogeneous nucleation. Moreover, we found a weak trend of the distance order parameters of the aspirin molecules to be similar that of heterogeneous nucleation activities. Our results from the two-part study suggest the importance of local binding to heterogeneous nucleation as well as the possibility of using the binding affinity to the local area (the free energy of binding to the best site and the number of nucleating molecules associated with the area of the best binding site) and the distance order parameters to guide the selection of polymers.     

Rupture of thin stagnant films on a solid surface due to random thermal and mechanical perturbations

A generalized formalism for the rupture of a nondraining thin film on a solid support due to imposed random thermal and mechanical perturbations, modeled as a Gaussian white noise, is presented. The evolution of amplitude of perturbation is described by a stochastic differential equation. The average film rupture time is the average time for the amplitude of perturbation to equal to the film thickness and is calculated by employing a first passage time analysis for different amplitudes of imposed perturbations, wavenumbers, film thickness, van der Waals and electrostatic interactions and surface tensions. The results indicate the existence of an optimum wavenumber at which the rupture time is minimum. A critical film thickness is identified based on the sign of the disjoining pressure gradient, below which the film is unstable in that the rupture time is very small. The calculated values of rupture time as well as the optimum wavenumber in the present analysis agree well with the results of linear stability analysis for immobile as well as completely mobile gas-liquid film interfaces. For stable films, the rupture time is found to increase dramatically with film thickness near the critical film thickness. As expected, the average rupture time was found to be higher for smaller amplitudes of imposed perturbations, larger surface potentials, larger surface tensions and smaller Hamaker constants.     

Shell closings and geometric structure effects. A systematic approach to the interpretation of abundance distributions observed in photoionisation mass spectra for alkali cluster beams

Recent mass spectroscopic studies of continuous cluster beams resulting from supersonic expansions of alkali metal vapor have led to the postulation of islands of enhanced thermodynamic stability among the clusters produced. We discuss the various assumptions being made in converting ion abundances measured in these mass spectra into information about neutral stabilities. In this connection a number of experiments are described which allow insight into unimolecular dissociation of alkali cluster ions and into neutral cluster growth.     

Light-induced dephosphorylation of a 33 kDa protein in the wild-type strain of Neurospora crassa: the regulatory mutants wc-1 and wc-2 are abnormal

Light induces the dephosphorylation of a 33 kdalton protein within 8 min in the wild-type strain of Neurospora crassa. The regulatory mutants, wc-1 and wc-2, have an altered pattern of phosphoproteins in darkness and also after irradiation. Because the wc genes have previously been implicated in photodifferentiation (F. Degli Innocenti and V. E. A. Russo, Genetic analysis of blue light-induced responses in Neurospora crassa, in H. Senger (ed.), Blue Light Effects in Biological Systems, Springer-Verlag, Berlin, Heidelberg, 1984, pp. 213-219), we suggest that protein dephosphorylation may constitute a necessary step in the light-transduction chain of Neurospora crassa.