The modern mass spectrometer—a complete chemical laboratory

Using nitrobenzene as an example, various ways in which a contemporary mass spectrometer can be utilized to yield a wealth of information about the compound studied are reviewed. Applying a variety of different techniques and procedures, in addition to the conventional low resolution mass spectrum, the following nitrobenzene spectra have been obtained: collision induced dissociation mass spectrum, mass analysed ion kinetic energy spectra, collision induced dissociation mass analysed ion kinetic energy spectra, spectra obtained at constant B/E, spectra obtained at constant B²/E, high voltage scans of metastable ion fragmentation processes, consecutive fragmentations in different field free regions, charge exchange mass spectra, charge stripping mass spectra, doubly charged ion mass spectra, chemical ionization mass spectra, negative ion mass spectra, negative ion mass analysed ion kinetic energy spectra, negative ion mass analysed ion kinetic energy collision induced dissociation spectra, charge inversion spectra, etc. The complementary types of information available from the above studies are discussed to show the unique versatility of mass spectrometry as a technique for the examination of organic compounds.     

Comparison of electron ionization mass spectra of some organic compounds (MW < 200 Da) recorded on mass spectrometers of various types

Low-resolution electron ionization mass spectra recorded on various types of mass spectrometers (time-of-flight, quadrupole, and three-dimensional ion trap) were compared. A model mixture of 10 organic compounds (MW < 200 Da) was analyzed by gas chromatography-mass spectrometry. Pure mass spectra of analytes were extracted using the AMDIS software. The best repeatability was achieved for the time-of-flight mass spectrometer. The mass spectra recorded by a quadrupole and a time-of-flight mass spectrometer were quite similar. In the case of these instruments, library search using a commercial mass spectral data base (NIST’05) gave satisfactory result for each analyte (rank 1 or 2 in the “hit list”; Match > 900). In some cases, the mass spectra of model compounds recorded by the ion trap mass spectrometer differed in intensity of certain mass spectral peaks (but not in the set of peaks) from the mass spectra presented in the library and from the experimental mass spectra recorded by the time-of-flight and quadrupole instruments.     

The mass spectrometry of polychlorinated dibenzo-p-dioxins

The negative ion chemical ionization mass spectra of polychlorinated dibenzo-p-dioxins using oxygen, methane and methane/oxygen are reported together with their methane positive ion chemical ionization mass spectra and conventional electron impact spectra. The methane/oxygen negative ion chemical ionization mass spectra proved to be the most useful of the negative ion spectra for structure determination.     

Electron impact and chemical ionization mass spectra of some unsaturated anomeric C-glycosides

Electron impact mass spectra at 70 eV electron energy and chemical ionization mass spectra with ammonia as the reagent gas are reported for certain unsaturated C-glycosides. Comparisons are made between the mass spectra of anomeric pairs of these glycosides.     

A comparison of electron ionization mass spectra obtained at 70 eV,low electron energies,and with cold EI and their NIST library identification probabilities

Electron ionization (EI) mass spectra of 46 compounds from several different compound classes were measured. Their molecular ion abundances were compared as obtained with 70‐eV EI, with low eV EI (such as 14 eV), and with EI mass spectra of vibrationally cold molecules in supersonic molecular beams (Cold EI). We further compared these mass spectra in their National Institute of Standards and Technology (NIST) library identification probabilities. We found that

1. Low eV EI is not a soft ionization method, and it has little or no influence on the molecular ion relative abundances for large molecules and those with weak or no molecular ions.
2. Low eV EI for compounds with abundant or dominant molecular ions in their 70 eV mass spectra results in the reduction of low mass fragment ions abundances thereby reducing their NIST library identification probabilities thus rarely justifies its use in real‐world applications.
3. Cold EI significantly enhances the relative abundance of the molecular ions particularly for large compounds; yet, it retains the low mass fragment ions; hence, Cold EI mass spectra can be effectively identified by the NIST library.
4. Different standard EI ion sources provide different 70 eV EI mass spectra. Among the Agilent technologies ion sources, the “Extractor” exhibits relatively abundant molecular ions compared with the “Inert” ion source, while the “High efficiency source” (HES) provides mass spectra with depleted molecular ions compared with the “Inert” ion source or NIST library mass spectra.

These conclusions are demonstrated and supported by experimental data in nine figures and two tables.     

Determining the time needed for the vortex method for preparing solvent-free MALDI samples of low molecular mass polymers

Matrix-assisted laser desorption/ionization (MALDI) mass spectrometry is an important technique to characterize many different materials, including synthetic polymers. MALDI mass spectral data is used to determine the polymer average molecular weights, repeat units, and end groups. The development of the vortex method of solvent-free sample preparation showed that remarkably short mixing times could prepare samples that yielded high quality MALDI mass spectra. In this paper, we use microscopy images and MALDI mass spectra to evaluate the mixing time required by the vortex method to produce mass spectra for low molecular mass polymer samples. Our results show that mixing times of as little as 10 s can generate homogeneous thin films that produce high quality mass spectra with S/N ∼ 100. In addition, ultrashort mixing times of only 2 s still produce samples with mostly smooth morphology and mass spectra with S/N ∼ 10.     

Low-energy mass spectra of some aliphatic ketones

The charge exchange mass spectra of a selection of C₅-C₇ ketones have been measured using [CS₂]⁺˙, [COS]⁺˙ and [N₂O]_+. as reagent ions. The low energy charge exchange with [CS₂]⁺˙ or [COS]⁺˙ provides simple primary ion mass spectra, which readily permit structure elucidation in contrast to metastable ion spectra. In several cases, isomer distinction is easier from the charge exchange mass spectra than from the electron impact mass spectra. The energy transfer from [N₂O]⁺˙ is sufficiently high for complex spectra resembling electron impact mass spectra to be obtained.     

Stereospecific fragmentation of starfish polyhydroxysteroids in electrospray ionization mass spectrometry

Electrospray ionization mass spectra and collision-induced dissociation mass spectra in positive and negative ion modes of five polyhydroxysteroid compounds from starfish were studied. Tandem mass spectra exhibit extensive fragmentation, including sequential neutral losses of H₂O molecules and cleavages in the tetracyclic nucleus and side chains. The relative intensity of some peaks in tandem mass spectra enables stereoisomers with the different orientations of the hydroxyl group at C15 in the tetracyclic nucleus to be distinguished. Some data on the fragmentation mechanisms were obtained by H–D exchange and mass spectrometry analysis.     

Charge-Reversal mass spectra of enolate ions of some open-chain and cyclic ketones for structure identification

The charge-reversal (CR) mass spectra of the enolate ions of heptanal and ten isomeric heptanones, of cyclohexanone, of cycloheptanone, of isomeric methylcyclohexanones, of isomeric ethylcyclohexanones and of the iso meric monoterpene ketones camphor, fenchone, pulegone and thujone were obtained by deprotonation using OH^? under chemical ionization conditions followed by collision of the [M ? H] ^? ions with helium in the second field-free region of a VG ZAB 2F mass spectrometer. The CR mass spectra were evaluated by similarity index (SI) values. Characteristic of the CR mass spectra of the open-chain enolates are fragment ions formed by α-cleavage. However, the CR mass spectra are dominated by peaks of small hydrocarbon ions, particularly in the case of cyclic and bicyclic enolates. The CR mass spectra of enolates of linear heptanones differing in the position of the carbonyl group can be easily correlated with the structure of the parent ketone. The CR mass spectra of enolates of isomeric heptan-2-ones differing only in the degree of branching of the alkyl group are similar, but can be distinguished by the SI values. The CR mass spectra of the enolates of the isomeric cyclic and bicyclic ketones studied are more or less identical and cannot be used for structural assignment.     

Mass spectra of geometrical isomers: The isomeric 3- and 7-cyclohexyl-2-norbornanols

The mass spectra of isomeric 3- and 7-cyclohexyl-2-norbornanols have been studied. The 3-substituted norbornanols give very similar mass spectra, whereas large differences were observed between the mass spectra of 7-syn and 7-anti isomers. While the mass spectra of these bicyclic alcohols show extensive rearrangements to give rise to many odd-electron ions, the Wagner-Meerwein rearrangement of the molecular ion prior to fragmentation or during the process of dehydration is not important. The origins and the mechanisms for the formation of some major ions are discussed in terms of low voltage spectra, defocused metastables and their relative abundances, and ionization or appearance potentials of the ions of interest.     

Mass spectra of π-cyclopentadienyl-diene cobalt complexes

Many reports on the mass spectra of organotransition-metal complexes have appeared in recent years,¹ whilst there have only been a few reports on the mass spectra of transition metal olefin complexes, some metal carbonyl olefin complexes²³⁴ and π-cyclooctenyl-π-cyclooctadienyl cobalt.⁵ Recently fragmentation paths of π-cyclopentadienyl-cyclooctadiene rhodium were elucidated by King.⁶ The present authors found metastable ions in the mass spectra of π-cyclopentadienyl-diene cobalt complexes as well as in the mass spectra of π-cyclopentadienyl-diene rhodium complexes.⁷. In the present paper the authors wish to report the mass spectra of several π-cyclopentadienyl diene cobalt complexes.     

Mass spectrometric separation and quantitation of overlapping isotopologues. Deuterium containing hydrides of As,Sb, Bi,Sn, and Ge

Mass spectra of fully and partially deuterated As, Sb, Bi, Ge, and Sn hydrides have been obtained using several mathematical approaches aimed at signal extraction and reconstruction. Study of such hydride mixtures is important for the elucidation of hydride generation mechanisms. In this approach, mass spectra of partially deuterated isotopomers, i.e., AsH₂D and AsHD₂, are extracted using the weighted two-band target entropy minimization method. Alternatively, these mass spectra were constructed from the mass spectra of fully deuterated and hydrogenated hydrides using the statistical approach in fragmentation pathways. Concentration profiles of all deuterated hydrides were obtained from their overlapping mixture mass spectra using least-squares deconvolution.     

Basic rules for the interpretation of atmospheric pressure ionization mass spectra of small molecules

This review summarizes the basic rules for the interpretation of atmospheric pressure ionization (API) mass spectra of small molecules written with the style primarily intended for beginners and low-experienced researchers with the mass spectra interpretation. The first and basic step in any interpretation of mass spectra is always the determination of molecular weight, which is relatively easy in case of soft ionization techniques due to the limited extend of fragmentation and the prevailing presence of (de)protonated molecules in the full scan mass spectra. These [M+H]⁺ and [M−H]⁻ ions are often accompanied by low abundant molecular adducts, which can be used as the supplementary information for the unambiguous determination of molecular weights. In certain cases, adduct ions may dominate the spectra. The subsequent interpretation of full scan and tandem mass spectra is more complicated due to a high number of possible functional groups, structural subunits and their combinations resulting in numerous competitive fragmentation pathways. Typical neutral losses and the effect of individual functional groups on the fragmentation are discussed in detail and illustrated with selected examples. Modern mass analyzers have powerful features for the structural elucidation, for example high resolving power, high mass accuracy, multistage tandem mass spectrometry, dedicated softwares for the interpretation of mass spectra and prediction of their fragmentation. Background information on differences among individual ionization techniques suitable for the HPLC–MS coupling and basic types of mass analyzers with consequences for the data interpretation is briefly discussed as well. Selected examples illustrate that the right optimization of chromatographic separation and the use of other than mass spectrometric detectors can bring valuable complementary information.     

Mass spectral behavior of n-alkynes

The 70 e V-electron impact mass spectra of the C₇–C₁₀ n-alkynes have been determined as well as the metastable ion spectra of the molecular ions and the [CS₂]⁺ and [N₂O]⁺ charge exchange mass spectra of the C₇-C₉ n-alkynes. The metastable ion mass spectra provide only a limited opportunity to distinguish between isomers; however, the 70-eV EI mass spectra of isomeric compounds permit a ready distinction between isomers. The [CS₂]⁺ charge exchange mass spectra of isomeric compounds also show substantial differences. The [N₂O]⁺ charge exchange mass spectra do not show the enhancement of β-fission fragments observed in field ionization experiments, despite representing ions of similar internal energy, and it is concluded that field dissociation is responsible for the β-fission fragments in the field ionization experiments.     

Use of fast atom bombardment mass spectrometry for the characterization of nitroaromatic isomers

Positive and negative ion fast atom bombardment (FAB) mass spectra of some monosubstituted nitroaromatic isomers are reported. Generally ions carresponding to [M + H]⁺ and M⁺ are observed in the positive ion FAB spectra; ions such as [M ? H] ^? and M^?˙ are observed in the negative ion FAB spectra. The use of FAB mass spectra to distinguish the isomers is discussed. Comparisons of FAB, chemical ionization and electron impact mass spectra of the same isomers (wherever possible) are reported. The structural information obtained in the negative ion FAB spectra complement those obtained in the positive ion FAB spectra.     

Unexpected mass spectral skeletal rearrangements in aromatic thioamides

Interesting skeletal rearrangements, resulting in the formation of unexpected fragments, have been noticed in the mass spectra of aromatic thioamides of cyclic amines such as piperidine, morpholine and pyrrolidine. Suitable mechanisms, based on mass analysed ion kinetic energy spectra, high voltage scan spectra and high resolution data, have been proposed for the formation of [M? SH]⁺ ions and the fragment at m/z (103+R) in the mass spectra of these compounds. The mass spectra of the thioamides of non-cyclic amines and the thioamides of aliphatic acids contain peaks corresponding to a four-centred skeletal rearrangement followed by the elimination of either the thioalkoxy or the thiophenoxy radical from the molecular ions.     

Effect of electrospray ionization conditions on low-energy tandem mass spectra of peptides

The effect of electrospray ionization (ESI) conditions on low-energy tandem mass spectra of peptides in the relative molecular mass range 400–1200 was examined. For singly charged peptide ions the source skimmer potential (which determines the degree of acceleration of the ions through the intermediate pressure region in the source) can strongly influence the extent of fragmentation observed in tandem mass spectra, especially at low collision energies. For each peptide there is an optimum skimmer potential which represents a balance between generating ions with sufficient internal energy for subsequent tandem mass spectrometric experiments and inducing the onset of other processes such as source fragmentation. The fragmentation which can be achieved in tandem mass spectra with high skimmer potentials differs from ESI source fragmentation for the same peptides. We have found that fragmentation in ESI mass spectra depends both on skimmer potential and on solvent pH, presumably because the latter determines the proportion of doubly charged species generated from a given peptide. Low-energy tandem mass spectra of peptides following ESI are equally as sensitive to peptide structure and the type of adduct studied (e.g. [M + H]⁺ vs. [M + NH₄]⁺) as tandem mass spectra obtained following older ionization methods such as fast atom bombardment.     

Electron impact and chemical ionization mass spectra of aryl ureas

The electron impact and chemical ionization mass spectra of a series of N,N′, -diaryl ureas have been compared. The electron impact mass spectra indicate rearrangements leading to two pairs of aromatic amines and isocyanates, either as ions or molecules. The chemical ionization mass spectra showed the formation of protonated amines and isocyanates via rearrangement.     

The mass spectra and ionization potentials of the neutral fragments produced during the electron bombardment of aromatic compounds

A mass spectrometer equipped with a dual ionization chamber ion source has been used to characterize directly the neutral species produced in the dissociative ionization of gases by electron impact. Neutral fragment mass spectra have been obtained for the electron ionization and fragmentation of benzene, toluene, o-xylene, m-xylene, p-xylene, mesitylene and isotopically labeled toluene. The neutral fragment mass spectra correlate well with the structures of the molecules. The abundant species in the neutral fragment mass spectra also correlate reasonably well with the abundant complementary positive ions of the normal mass spectra. Ionization potentials have been determined for the abundant neutral species produced. Where comparisons with values reported elsewhere are possible, the agreement is usually within ±0.2 eV or less.     

Electron-impact studies—LXXIV: A survey of rearrangement processes in the ‘doubly-charged ion’ mass spectra of aromatic compounds

The technique of Beynon² has been used to determine the ‘doubly-charged ion’ mass spectra of a variety of aromatic compounds which contain pronounced rearrangement peaks in their conventional mass spectra. Many, but not all, of the ‘doubly-charged ion’ spectra contain similar rearrangement peaks to those observed in conventional spectra.