H/D isotopic recognition in hydrogen-bonded systems: strong dynamical coupling effects in the polarized IR spectra of 3-methylthioacetanilide and 4-methylthioacetanilide crystals

This paper presents the investigation results of the polarized IR spectra of the hydrogen bond in crystals of 3- and 4-methylthioacetanilide. The spectra were measured at 293 and 77 K by a transmission method, with the use of polarized light. The main spectral properties of the crystals can be interpreted satisfactorily in terms of the "strong-coupling" theory, on the basis of the hydrogen bond centrosymmetric dimer model. The spectra revealed that the strongest vibrational exciton coupling involved the closely spaced hydrogen bonds, each belonging to a different chain of associated 3- and 4-methylthioacetanilide molecules. A weaker exciton coupling involved the adjacent hydrogen bonds in each individual chain. It was proven that a nonrandom distribution of the protons and deuterons took place in the lattices of isotopically diluted crystalline samples of 3- and 4-methylthioacetanilide. In each case, the H/D isotopic "self-organization" mechanism involved all four hydrogen bonds from each unit cell.     

Effects of dynamical couplings in IR spectra of the hydrogen bond in N-phenylacrylamide crystals

This article presents the investigation results of the polarized IR spectra of the hydrogen bond in N-phenylacrylamide crystals measured in the frequency range of the proton and deuteron, ν(N-H) and ν(N-D), stretching vibration bands. The basic spectral properties of the crystals were interpreted quantitatively in terms of the "strong-coupling" theory. The proposed model of the centrosymmetric dimer of hydrogen bonds facilitated the explanation of the well-developed, two-branch structure of the ν(N-H) and ν(N-D) bands as well as the isotopic dilution effects in the spectra. The vibronic mechanism of the generation of the long-wave branch of the ν(N-H) band ascribed to the excitation of the totally symmetric proton vibration was elucidated. The complex fine structure pattern of ν(N-H) and ν(N-D) bands in N-phenylacrylamide spectra in comparison with the spectra of other secondary amide crystals (e.g., N-methylacetamide and acetanilide) can be accounted for in terms of the vibronic model for the forbidden transition breaking in the dimers. On the basis of the linear dichroic and temperature effects in the polarized IR spectra of N-phenylacrylamide crystals, the H/D isotopic "self-organization" effects were revealed.     

Polarization IR spectra of hydrogen bonded pyrazole crystals: self-organization effects in proton and deuteron mixture systems. Long-range H/D isotopic effects

This paper deals with experimental studies of the polarization IR spectra of solid-state pyrazole H1345, as well as of its H1D345, D1H345 and D1345 deuterium derivatives. Spectra were measured for the vN-H and vN-D band frequency ranges at temperatures of 298 and 77 K. The spectra were found to strongly change their intensity distribution and their polarization properties with the decrease of temperature. These effects were ascribed to some temperature-induced conformational changes in the hydrogen bond lattices. The studies reported allowed the finding of new kind of isotopic effects H/D in the open-chain hydrogen bond systems, i.e. the self-organization effects. It was found that the spectrally active aggregates of hydrogen bonds remain unchanged despite the growing isotope H/D exchange rate. This statement was supported by analysis of the residual polarized vN-H and vN-D band properties, measured for the isotopically diluted crystalline samples. Analysis of the band shapes of the four hydrogen isotope derivative crystals proved the existence of another kind of H/D isotopic effect, i.e. the long-range isotopic effect. It depends on an influence of the pyrazole ring hydrogen atoms onto the vN-H and vN-D band widths and onto the band fine structures.     

1H/2H NMR studies of geometric H/D isotope effects on the coupled hydrogen bonds in porphycene derivatives

The 1H and 2H NMR spectra of porphycene (1), 2,3,6,7,12,13,16,17-octaethylporphycene (2), 2,7,12,17-tetra-n-propylporphycene (3), and 2,7,12,17-tetra-(tert-butyl)-3,6-13,16-dibenzo[cde;mno]porphycene (4) partially deuterated in the mobile proton sites are reported. These compounds exhibit two intramolecular NHN hydrogen bonds of increasing strength representing models of the concerted HH transfer in the parent compound, porphycene. The 1H chemical shifts of the mobile protons are correlated with the difference of the energies of the amino- and imino-N1s orbitals reported by Ghosh A.; Moulder J.; Br?ring M.; Vogel E. Angew. Chem., Int. Ed. 2001, 113, 445-448. The chemical shifts of 4 indicate a reduced contribution of the aromatic ring current as compared to the other compounds which is associated to the nonplanarity of this molecule. The primary H/D isotope effects on the chemical shifts give information about the primary, secondary, and vicinal geometric isotope effects of the two inner hydrogen bonds of porphycenes. The vicinal effects indicate a cooperative coupling of the two hydrogen bonds which may favor a concerted double proton-transfer mechanism.     

Systematic ab initio study of 15N-15N and 15N-1H spin-spin coupling constants across N-H+-N hydrogen bonds: predicting N-N and N-H coupling constants and relating them to hydrogen bond type

A systematic ab initio EOM-CCSD study of 15N-15N and 15N-1H spin-spin coupling constants has been carried out for a series of complexes formed from 11 nitrogen bases with experimentally measured proton affinities. When these complexes are arranged in order of increasing proton affinity of the proton-acceptor base and, for each proton acceptor, increasing order of proton affinity of the protonated N-H donor, trends in distances and signs of coupling constants are evident that are indicative of the nature of the hydrogen bond. All two-bond spin-spin coupling constants (2hJ(N-N)) are positive and decrease as the N-N distance increases. All one-bond N-H coupling constants (1J(N-H)) are negative (1K(N-H) are positive). 1J(N-H) is related to the N-H distance and the hybridization of the donor N atom. One-bond H...N coupling constants (1hJ(H-N)) are positive (1hK(H-N) are negative) for traditional hydrogen bonds, but 1hJ(H-N) becomes negative when the hydrogen bond acquires sufficient proton-shared character. The N-N and H...N distances at which 1hJ(H-N) changes sign are approximately 2.71 and 1.62 A, respectively. Predictions are made of the values of 2hJ(N-N) and 1J(N-H), and the signs of 1hJ(H-N), for those complexes that are too large for EOM-CCSD calculations.     

Polarization IR spectra of the hydrogen bond in phenylacetic acid crystals: H/D isotopic effects temperature and polarization effects

This paper deals with experimental studies and with quantitative interpretation of the polarized IR crystalline spectra of phenylacetic acid and of its deuterium isotopomers d2 and d7. The spectra were measured in the v(O-H) and in the v(O-D) band frequency ranges at temperatures of 298 and 77 K. The intensity distribution in the bands was quantitatively reproduced on the basis of the strong-coupling model, when assuming that the isolated (COOH)2 and (COOD)2 cycles were the source of the spectral properties of the crystals. Such approach appeared to be sufficient for explaining most of the isotopic and the temperature effects in the spectra. A vibronic mechanism, promoting the symmetry forbidden transition in the IR for the totally symmetric proton stretching vibrations in centrosymmetric hydrogen bond dimers, was found to be of a considerably minor importance, when compared with analogous properties of arylcarboxylic acid crystals. The spectra of phenylacetic acid crystals, unlike the spectra of arylacetic acid crystals do not exhibit the so-called H/D long-range isotopic effects, depending on an influence of the aromatic ring hydrogen atoms on the v(O-H) band fine structure patterns. Also no Fermi resonance impact on the v(O-H) band shape was identified in the phenylacetic acid crystal spectra. These effects were ascribed to weakening of electronic couplings between the hydrogen bonds and the phenyl rings, due to the separation of these groups in phenylacetic acid molecules by methylene groups.     

Polarized IR spectra of the hydrogen bond in acetic acid crystals

The paper presents the results of our investigations of the polarized IR spectra of the hydrogen bond in crystals of acetic acid, CH₃COOH, as well as in crystals of three deuterium isotopomers of the compound: CH₃COOD, CD₃COOH and CD₃COOD. The spectra were measured at 283 K and at 77 K by a transmission method using polarized light. Theoretical analysis of the results concerned the linear dichroic effects, together with the H/D isotopic and temperature effects observed in the solid-state IR spectra of the hydrogen and of the deuterium bond at the frequency ranges of the ν_O–H and the ν_O–D bands, respectively. Basic spectral properties of the crystals can be interpreted satisfactorily in terms of one of the quantitative theories of the IR spectra of the hydrogen bond, i.e. the “strong-coupling” theory or the “relaxation” theory when a hydrogen bond dimer model is used. From the spectra obtained it resulted that the strongest exciton coupling involved the closely spaced hydrogen bonds, belonging to different chains of associated acetic acid molecules. These results contradict the former explanation of the spectra within a model, which assumed a strong vibrational exciton coupling between four hydrogen bonds in a unit cell. On analyzing the spectra of isotopically diluted crystalline samples of acetic acid it has been proved that a non-random distribution of the protons and deuterons takes place in the hydrogen bond lattices. This non-conventional isotopic effect is a result of dynamical co-operative interactions involving hydrogen bonds in the system. Simultaneously it has been also found that in an individual hydrogen bonded chain in the crystals, distribution of the hydrogen isotope atoms H and D was fully random. The H/D isotopic “self-organization” mechanism most probably involves a pair of hydrogen bonds from each unit cell where each hydrogen bond belongs to a different chain.     

'Self-organization' processes in proton and deuteron mixtures in open-chain hydrogen bond systems: polarization IR spectra of 4-mercaptopyridine crystals.

This paper is devoted to IR spectroscopic studies in polarized light of 4-mercaptopyridine (4-MPD) hydrogen-bonded crystals. These studies were preceded by determination of the 4-mercaptopyridine X-ray structure. Polarization spectra of 4-mercaptopyridine crystals were measured in the frequency ranges of V(N-H) and V(N-D) bands at room temperature, and also at the temperature of liquid nitrogen, for the two different crystalline faces: 'bc' and 'ac'. When investigating 'residual' v(N-H) band shapes for crystals that were diluted by deuterium, strong dichroic effects in the spectra were still observed, providing evidence for the existence in the hydrogen bond chains of domains containing exclusively protons or deuterons. This phenomenon proves the existence of a new kind of H/D isotopic effects in open chain hydrogen bond systems, namely 'self-organization' effects. Such effects, however, were not observed for other open chain hydrogen bond systems, e.g. alcohol crystals. Solid-state spectra of 4-mercaptopyridine were quantitatively interpreted, along with the strong polarization and the isotopic effects, when based on the 'strong-coupling' theory for linearly arranged hydrogen bond dimers.     

H/D isotopic exchange between water molecules at ice surfaces

H/D isotopic exchange between H(2)O and D(2)O molecules was studied at the surface of ice films at 90-140 K by the technique of Cs(+) reactive ion scattering. Ice films were deposited on a Ru(0001) substrate in different compositions of H(2)O and D(2)O and in various structures to study the kinetics of isotopic exchange. H/D exchange was very slow on an ice film at 95-100 K, even when H(2)O and D(2)O were uniformly mixed in the film. At 140 K, H/D exchange occurred in a time scale of several minutes on the uniform mixture film. Kinetic measurement gave the rate coefficient for the exchange reaction, k(140 K)=1.6(+/-0.3) x 10(-19) cm(2) molecule(-1) s(-1) and k(100 K)< or =5.7(+/-0.5) x 10(-21) cm(2) molecule(-1) s(-1) and the Arrhenius activation energy, E(a)> or =9.8 kJ mol(-1). Addition of HCl on the film to provide excess protons greatly accelerated the isotopic exchange reaction such that it went to completion very quickly at the surface. The rapid reaction, however, was confined within the first bilayer (BL) of the surface and did not readily propagate to the underlying sublayer. The isotopic exchange in the vertical direction was almost completely blocked at 95 K, and it slowly occurred only to a depth of 3 BLs from the surface at 140 K. Thus, the proton transfer was highly directional. The lateral proton transfer at the surface was attributed to the increased mobility of protonic defects at the molecularly disordered and activated surface. The slow, vertical proton transfer was probably assisted by self-diffusion of water molecules.     

Low-temperature FTIR spectra and hydrogen bonds in polycrystalline adenosine and uridine

FTIR spectra of polycrystalline samples of adenosine and uridine, pure and containing small (<10%) quantity of N(O)H or N(O)D groups, were measured in KBr pellets from 4000 to 400 cm(-1) at temperatures from 300 to 20 K. For the first time, the bands of narrow isotopically decoupled proton stretching vibration nu1 mode of NH- and OH- groups were found and assigned to ordered hydrogen bonds according to crystal structural data for both nucleosides. The FTIR adenosine spectra in the out-of-plane bending proton nu4 mode range (lower than 1000 cm(-1)) of N(O)H groups revealed at low temperature at least twice more bands, than in the nu1 range, which are influenced by isotopic exchange and (or) cooling. Almost all of them have their counterparts in the N(O)D substance spectrum with an isotopic frequency ratio of 1.30-1.40. These bands were assigned to the differently H-bound disordered NH and OH protons, which could not be seen with crystal structural methods. The energy and length of different H-bonds were estimated from peak positions of both mode bands (as the red shift of nu1 or blue shift of nu4 relatively free molecules) with well-established empirical correlations between spectral, thermodynamic and structural parameters of hydrogen bonds. The results were compared with independent experimental data.     

Theoretical investigation of hydrogen bonds between CO and HNF2, H2NF, and HNO

Ab initio quantum mechanics methods were applied to investigate the hydrogen bonds between CO and HNF2, H2NF, and HNO. We use the Hartree-Fock, MP2, and MP4(SDQ) theories with three basis sets 6-311++G(d,p), 6-311++G(2df,2p), and AUG-cc-pVDZ, and both the standard gradient and counterpoise-corrected gradient techniques to optimize the geometries in order to explore the effects of the theories, basis sets, and different optimization methods on this type of H bond. Eight complexes are obtained, including the two types of C...H-N and O...H-N hydrogen bonds: OC...HNF2(C(s)), OC...H2NF(C(s) and C1), and OC...HNO(C(s)), and CO...HNF2(C(s)), CO...H2NF(C(s) and C1), and CO...HNO(C(s)). The vibrational analysis shows that they have no imaginary frequencies and are minima in potential energy surfaces. The N-H bonds exhibit a small decrease with a concomitant blue shift of the N-H stretch frequency on complexation, except for OC...HNF2 and OC...H2NF(C1), which are red-shifting at high levels of theory and with large basis sets. The O...H-N hydrogen bonds are very weak, with 0 K dissociation energies of only 0.2-2.5 kJ/mol, but the C...H-N hydrogen bonds are stronger with dissociation energies of 2.7-7.0 kJ/mol at the MP2/AUG-cc-pVDZ level. It is notable that the IR intensity of the N-H stretch vibration decreases on complexation for the proton donor HNO but increases for HNF2 and H2NF. A calculation investigation of the dipole moment derivative leads to the conclusion that a negative permanent dipole moment derivative of the proton donor is not a necessary condition for the formation of the blue-shifting hydrogen bond. Natural bond orbital analysis shows that for the C...H-N hydrogen bonds a large electron density is transferred from CO to the donors, but for the O...H-N hydrogen bonds a small electron density transfer exists from the proton donor to the acceptor CO, which is unusual except for CO...H2NF(C(s)). From the fact that the bent hydrogen bonds in OC(CO)...H2NF(C(s)) are quite different from those in the others, we conclude that a greatly bent H-bond configuration shall inhibit both hyperconjugation and rehybridization.     

Polarized IR spectra of the hydrogen bond in 2-thiopheneacetic acid and 2-thiopheneacrylic acid crystals: H/D isotopic and temperature effects

Polarized IR spectra of 2-thiopheneacetic acid and of 2-thiopheneacrylic acid crystals were measured at 293 and 77 K in the υ(O-H) and υ(O-D) band frequency ranges. The corresponding spectra of the two individual systems strongly differ, one from the other, by the corresponding band shapes as well as by the temperature effect characterizing the bands. The crystal spectral properties remain in close relation with the electronic structure of the two different molecular systems. We show that a vibronic coupling mechanism involving the hydrogen bond protons and the electrons on the π- electronic systems in the molecules determines the way in which the vibrational exciton coupling between the hydrogen bonds in the carboxylic acid dimers occurs. Strong coupling in 2-thiopheneacrylic acid dimers prefers a "tail-to-head"-type Davydov coupling widespread by the π- electrons. A weak through-space coupling in 2-thiopheneacetic acid dimers, of a van der Waals type, is responsible for a "side-to-side"-type coupling. The relative contribution of each exciton coupling mechanism in the dimer spectra generation is temperature and the molecular electronic structure dependent. This explains the observed difference in the temperature- induced evolution of the compared spectra.     

Comparative analysis of hydrogen bonding with participation of the nitrogen, oxygen and sulfur atoms in the 2(2'-heteroaryl)pyrroles and their trifluoroacetyl derivatives based on the 1H, 13C, 15N spectroscopy and DFT calculations

The N-H...X (X = N,O,S) intramolecular hydrogen bond in the series of 2(2'-heteroaryl)pyrroles and their trifluoroacetyl derivatives is examined by the (1)H, (13)C, (15)N spectroscopy and density functional theory (DFT) calculations. The influence of the hydrogen bond on coupling and shielding constants is considered. It is shown that the N-H...N intramolecular hydrogen bond causes a larger increase in the absolute size of the (1)J(N,H) coupling constant and a larger deshielding of the bridge proton than the N-H...O hydrogen bond. The effect of the N-H...S interaction on the (1)J(N,H) coupling constant and the shielding of the bridge proton is small. The NMR parameter changes in the series of the 2(2'-heteroaryl)pyrroles due to N-H...X hydrogen bond and the series of the 1-vinyl-2-(2'-heteroaryl)-pyrroles due to C-H...X hydrogen bond have the same order. The proximity of the nitrogen, oxygen or sulfur lone pair to the F...H hydrogen bridge quenches the trans-hydrogen bond spin-spin couplings (1h)J(F,H-1) and (2h)J(F,N).     

An H/D isotopic substitution study of the H5O2+.Ar vibrational predissociation spectra: exploring the putative role of Fermi resonances in the bridging proton fundamentals

To clarify the nature of the motions contributing to the observed multiplet structures in the low-energy (900-1800 cm-1) vibrational spectrum of the H5O2+ "Zundel" ion, we report the evolution of its vibrational fingerprint with sequential H/D isotopic substitution in a predissociation study of the Ar complexes. Of particular interest is the D4HO2+ complex, which displays a single intense band in the vicinity of the asymmetric OHO stretch of the bridging proton, in contrast to the more complex multiplet observed for both H5O2+ and D5O2+ isotopologues. These intensity patterns are consistent with the recent assignment of the bridging proton band's doublet in the H5O2+.Ne spectrum to a 2 x 2 Fermi resonance interaction between the shared proton stretch and a complex background level primarily derived from the O-O stretch together with two quanta of the wagging vibration involving the pyramidal deformations of the flanking H2O groups (Vendrell, O.; Gatti, F.; Meyer, H.-D. Angew. Chem., Int. Ed. 2007, 46, 6918). In addition, the observed trends rule out assignment of the approximately 1800 cm-1 feature in H5O2+ to a combination band of the bridging proton vibration with the O-O stretch, providing a secure foundation for the previously reported scheme that attributes this band to the out-of-phase intramolecular bending fundamental. The observed feature occurs at an unusually high energy for typical HOH bends, however, and we explore the participation of the bridging proton in these eigenstates by following how the calculated harmonic spectrum evolves when artificially large masses are assigned to the proton. The empirical assignments are supported by anharmonic estimates of the isotope shifts evaluated by the diffusion Monte Carlo method.     

Ab initio EOM-CCSD spin-spin coupling constants for hydrogen-bonded formamide complexes: bridging complexes with NH3, (NH3)2, H2O, (H2O)2, FH, and (FH)2

EOM-CCSD spin-spin coupling constants across hydrogen bonds have been computed for complexes in which NH3, H2O, and FH molecules and their hydrogen-bonded dimers form bridging complexes in the amide region of formamide. The formamide one-bond N-H coupling constant [(1)J(N-H)] across N-H...X hydrogen bonds increases in absolute value upon complexation. The signs of the one-bond coupling constants (1h)J(H-X) indicate that these complexes are stabilized by traditional hydrogen bonds. The two-bond coupling constants for hydrogen bonds with N-H as the donor [(2h)J(N-X)] and the carbonyl oxygen as the acceptor [(2h)J(X-O)] increase in absolute value in the formamide/dimer relative to the corresponding formamide/monomer complex as the hydrogen bonds acquire increased proton-shared character. The largest changes in coupling constants are found for complexes of formamide with FH and (FH)2, suggesting that bridging FH monomers and dimers in particular could be useful NMR spectroscopic probes of amide hydrogen bonding.     

Theoretical model of infrared spectra of hydrogen bonds in molecular crystals and its application to interpretation of infrared spectra of 1-methylthymine

A theoretical model for vibrational interactions in the hydrogen bonds in molecular crystals with four molecules forming two centrosymmetric dimers in the unit cell is presented. The model takes into account anharmonic-type couplings between the high-frequency N-H(D) and the low-frequency N...O stretching vibrations in each hydrogen bond, resonance interactions (Davydov coupling) between equivalent hydrogen bonds in each dimer, resonance interdimer interactions within a unit cell, and Fermi resonance between the N-H(D) stretching fundamental and the first overtone of the N-H(D) in-plane bending vibrations. The vibrational Hamiltonian, selection rules, and expressions for the integral properties of an absorption spectrum are derived. The model is used for theoretical simulation of the NH stretching bands of 1-methylthymine and its ND derivative at 300 K. The effect of deuteration is successfully reproduced by our model. Infrared, far-infrared, Raman, and low-frequency Raman spectra of 1-methylthymine and its deuterated derivative have been measured. Experimental geometry and frequencies are compared with the results of density functional theory calculations performed at the B3LYP6-311++G**, B3LYP/cc-pVTZ, B3PW916-311++G**, and B3PW91/cc-pVTZ levels.     

Low temperature FTIR spectra and hydrogen bonds in polycrystalline cytidine

FTIR spectra of polycrystalline samples of cytidine, pure and containing a small quantity of N(O)H or N(O)D groups (<20%), were measured in KBr pellets from 4000 to 400 cm(-1) at temperatures from 300 to 20K. For the first time the bands of the narrow isotopically decoupled proton stretching vibration mode (nu(1)) of OH- and NH- groups were found; their number corresponds to the number of H-bonds in crystal according to structural data. The FTIR spectra at low temperature in the out-of-plane bending nu(4) proton mode range (lower than 1000 cm(-1)) of N(O)H groups revealed narrow bands, which correspond to nu(1) bands together with several "extra" bands, which are influenced by the isotopic exchange and (or) cooling. All of them have their counterparts in the N(O)D-substance spectrum with an isotopic frequency ratio of 1.30-1.40. The "extra" bands are assigned to the H-bound OH and NH protons, which are disordered and cannot be seen with X-ray crystal structure analysis. The peak positions of both mode bands (expressed as the red shift of nu(1) or blue shift of nu(4) modes relatively free molecules) were used for the estimation of the energy of different H-bonds using previously established empirical correlations between spectral and thermodynamic parameters of hydrogen bonds. The correlation of the red shift and H-bond length is also confirmed for all five H-bonds of cytidine.     

Study of polarized IR spectra of the hydrogen bond system in crystals of styrylacetic acid

We have investigated the polarized IR spectra of the hydrogen bond system in crystals of trans-styrylacetic acid C(6)H(5)CHCHCH(2)COOH, and also in crystals of the following three deuterium isotopomers of the compound: C(6)H(5)CHCHCH(2)COOD, C(6)H(5)CHCHCD(2)COOH and C(6)H(5)CHCHCD(2)COOD. The spectra were measured at room temperature and at 77K by a transmission method. The spectral studies were preceded by determination of the X-ray crystal structure. Theoretical analysis of the results concerned linear dichroic effects, the H/D isotopic and temperature effects, observed in the solid-state IR spectra of the hydrogen and of the deuterium bond, at the frequency ranges of the nu(OH) and the nu(OD) bands, respectively. Basic spectral properties of the crystals can be interpreted satisfactorily in terms of the "strong-coupling" theory, when based on a hydrogen bond dimer model. This model sufficiently explained not only a two-branch structure of the nu(OH) and the nu(OD) bands, and temperature-induced evolution of the crystalline spectra, but also the linear dichroic effects observed in the band frequency ranges. A vibronic mechanism was analyzed, responsible for promotion of the symmetry-forbidden transition in the IR for the totally symmetric proton stretching vibrations in centrosymmetric hydrogen bond dimers. It was found to be of minor importance, when compared with analogous spectral properties of arylcarboxylic acid, or of cinnamic acid crystals. These effects were ascribed to a substantial weakening of electronic couplings between the hydrogen bonds of the associated carboxyl groups and the styryl radicals, associated with the separation of these groups in styrylacetic acid molecules by methylene groups in the molecules.     

Polarized IR spectra of the hydrogen bond in two different oxindole polymorphs with cyclic dimers in their lattices

This article focuses on the problem of remarkably strong changes in the fine structure patterns of the ν(N-H) and ν(N-D) bands attributed to the hydrogen and deuterium bonds accompanying the phase transition, which occurs between two polymorphic forms of oxindole. The lattices of these two different crystals contain hydrogen-bonded cyclic dimers differ in their geometry parameters. The source of these differences in the polymorph spectral properties results from the geometry relations concerning the dimers constituting the lattice structural units. In the case of the "alpha" phase, the hydrogen bond lengths of the dimers differ by 0.18 ?. This leads to the "off-resonance exciton coupling" weakly involving the dimer hydrogen bonds. For the "beta" phase, with practically symmetric dimers in the lattice, the spectra become typical for centrosymmetric hydrogen bond systems due to the full resonance of the proton or deuteron vibrations.     

Ab initio study of complexes with two cations as N-H donors to F-: structures and spin-spin coupling constants across N-H-F hydrogen bonds

A systematic ab initio study has been carried out to determine the MP2/6-31+G(d,p) structures and EOM-CCSD coupling constants across N-H-F-H-N hydrogen bonds for a series of complexes F(H(3)NH)(2)(+), F(HNNH(2))(2)(+), F(H(2)CNH(2))(2)(+), F(HCNH)(2)(+), and F(FCNH)(2)(+). These complexes have hydrogen bonds with two equivalent N-H donors to F(-). As the basicity of the nitrogen donor decreases, the N-H distance increases and the N-H-F-H-N arrangement changes from linear to bent. As these changes occur and the hydrogen bonds between the ion pairs acquire increased proton-shared character, (2h)J(F)(-)(N) increases in absolute value and (1h)J(H)(-)(F) changes sign. F(H(3)NH)(2)(+) complexes were also optimized as a function of the N-H distance. As this distance increases and the N-H...F hydrogen bonds change from ion-pair to proton-shared to traditional F-H...N hydrogen bonds, (2h)J(F)(-)(N) initially increases and then decreases in absolute value, (1)J(N)(-)(H) decreases in absolute value, and (1h)J(H)(-)(F) changes sign. The signs and magnitudes of these coupling constants computed for F(H(3)NH)(2)(+) at short N-H distances are in agreement with the experimental signs and magnitudes determined for the F(collidineH)(2)(+) complex in solution. However, even when the N-H and F-H distances are taken from the optimized structure of F(collidineH)(2)(+), (2h)J(F)(-)(N) and (1h)J(H)(-)(F) are still too large relative to experiment. When the distances extracted from the experimental NMR data are used, there is excellent agreement between computed and experimental coupling constants. This suggests that the N-H-F hydrogen bonds in the isolated gas-phase F(collidineH)(2)(+) complex have too much proton-shared character relative to those that exist in solution.