Photo-modulation of supramolecular polymorphism in the self-assembly of a scissor-shaped azobenzene dyad into nanotoroids and fibers

Recent advances in the research field of supramolecularly engineered dye aggregates have enabled the design of simple one-dimensional stacks such as fibers and of closed structures such as nanotoroids (nanorings). More complex and advanced supramolecular systems could potentially be designed using a molecule that is able to provide either of these distinct nanostructures under different conditions. In this study, we introduced bulky but strongly aggregating cholesterol units to a scissor-shaped azobenzene dyad framework, which affords either nanotoroids, nanotubes, or 1D fibers, depending on the substituents. This new dyad with two trans-azobenzene arms shows supramolecular polymorphism in its temperature-controlled self-assembly, leading to not only oligomeric nanotoroids as kinetic products, but also to one-dimensional fibers as thermodynamic products. This supramolecular polymorphism can also be achieved via photo-triggered self-assembly, i.e., irradiation of a monomeric solution of the dyad with two cis-azobenzene arms using strong visible light leads to the preferential formation of nanotoroids, whereas irradiation with weak visible light leads to the predominant formation of 1D fibers. This is the first example of a successful light-induced modulation of supramolecular polymorphism to produce distinctly nanostructured aggregates under isothermal conditions.

Introduction of the bulky yet strongly aggregating cholesterol units to an azobenzene dyad lead to a supramolecular polymorphism not only in its temperature-controlled but also in photo-triggered self-assembly, leading to toroids and helical fibers.     

Supramolecular liquid crystallinity as a mechanism of supramolecular polymerization

Two types of supramolecular self-assembling polymers should be distinguished: the open type characterized by units with binding sites exposed to the surface and thus capable of extended growth (e.g. some synthetic and natural supramolecular polymers), and the closed type with binding sites internally compensated yielding well defined oligomeric complexes (e.g. DNA, collagen,haemoglobin). The growth of the open assemblies may be defined as a supramolecular polymerization. Both types form corresponding supramolecular liquid crystalline (SLC) phases, but the behaviour of the closed-type SLC is generally indistinguishable from that of liquid crystals formed by molecularly dispersed units. Quite different is the case of the open-type SLC when the anisotropic forces stabilizing the nematic phase interact with the contact forces that promote the growth of theassembly. In this case a cooperative enhancement of growth occurs simultaneously with the formation of the ordered phase. The theoretical basis for the growth coupled to orientation mechanism, laid down to explain the formation of linear micelle aggregates, may apply to most types of supramolecular polymerization. Outstanding resulting expectations are a large degree of supramolecular polymerization, orientation, superimposition of other growth mechanisms, dampened polydispersity and termination steps.     

Hierarchy of Asymmetry in Chiral Supramolecular Polymers: Toward Functional,Helical Supramolecular Structures

The formation of helical structures through the supramolecular polymerization of a variety of self-assembling units is reviewed. These scaffolds are usually obtained by efficient transfer or amplification of chirality phenomena, in which the starting self-assembling molecules possess different elements of asymmetry, such as point or axial chirality. Relevant examples of helical supramolecular structures investigated under thermodynamic control are reviewed, and the helical outcome of remarkable examples of chiral entities obtained through kinetic control are also highlighted. Finally, selected examples of flexible macroscopic chirality and catalysis are described to illustrate the applicability of helical aggregates.     

Helicity-driven chiral self-sorting supramolecular polymerization with Ag+: right- and left-helical aggregates

The study of chiral self-sorting is extremely important for understanding biological systems and for developing applications for the biomedical field. In this study, we attempted unprecedented chiral self-sorting supramolecular polymerization accompanying helical inversion with Ag⁺ in one enantiomeric component. Bola-type terpyridine-based ligands (R-L¹ and S-L¹) comprising R- or S-alanine analogs were synthesized. First, R-L¹ dissolved in DMSO/H₂O (1 : 1, v/v) forms right-handed helical fibers (aggregate I) via supramolecular polymerization. However, after the addition of AgNO₃ (0.2–1.1 equiv.) to the R-L¹ ligand, in particular, it was found that aggregate II with left-handed helicity is generated from the [R-L¹(AgNO₃)₂] complex through the [R-L¹Ag]⁺ complex via the dissociation of aggregate I by a multistep with an off pathway, thus demonstrating interesting self-sorting properties driven by helicity and shape discrimination. In addition, the [R-L¹(AgNO₃)₂] complex, which acted as a building block to generate aggregate III with a spherical structure, existed as a metastable product during the formation of aggregate II in the presence of 1.2–1.5 equiv. of AgNO₃. Furthermore, the AFM and CD results of two samples prepared using aggregates I and III with different volume ratios were similar to those obtained upon the addition of AgNO₃ to free R-L¹. These findings suggest that homochiral self-sorting in a mixture system occurred by the generation of aggregate II composed of the [R-L¹Ag]⁺ complex via the rearrangement of both, aggregates I and III. This is a unique example of helicity- and shape-driven chiral self-sorting supramolecular polymerization induced by Ag⁺ starting from one enantiomeric component. This research will improve understanding of homochirality in complex biological models and contribute to the development of new chiral materials and catalysts for asymmetric synthesis.

Chiral self-sorting supramolecular polymerization of bola-type terpyridine-based ligands (R-L¹ and S-L¹) comprising R- or S-alanine analogs occurred upon addition of Ag⁺ in one enantiomeric component.     

Depolymerization of supramolecular polymers by a covalent reaction; transforming an intercalator into a sequestrator

Controlling the reciprocity between chemical reactivity and supramolecular structure is a topic of great interest in the emergence of molecular complexity. In this work, we investigate the effect of a covalent reaction as a trigger to depolymerize a supramolecular assembly. We focus on the impact of an in situ thiol–ene reaction on the (co)polymerization of three derivatives of benzene-1,3,5-tricarboxamide (BTA) monomers functionalized with cysteine, hexylcysteine, and alkyl side chains: Cys-BTA, HexCys-BTA, and a-BTA. Long supramolecular polymers of Cys-BTA can be depolymerized into short dimeric aggregates of HexCys-BTAvia the in situ thiol–ene reaction. Analysis of the system by time-resolved spectroscopy and light scattering unravels the fast dynamicity of the structures and the mechanism of depolymerization. Moreover, by intercalating the reactive Cys-BTA monomer into an unreactive inert polymer, the in situ thiol–ene reaction transforms the intercalator into a sequestrator and induces the depolymerization of the unreactive polymer. This work shows that the implementation of reactivity into supramolecular assemblies enables temporal control of depolymerization processes, which can bring us one step closer to understanding the interplay between non-covalent and covalent chemistry.

We report on the controlled depolymerization of supramolecular 1D polymers into well-defined dimers triggered by a covalent reaction on the side chains of the monomer.     

Fluorescent supramolecular polymers of barbiturate dyes with thiophene-cored twisted π-systems

Because supramolecular polymerization of emissive π-conjugated molecules depends strongly on π–π stacking interaction, the formation of well-defined one-dimensional nanostructures often results in a decrease or only a small increase of emission efficiency. This is also true for our barbiturate-based supramolecular polymers wherein hydrogen-bonded rosettes of barbiturates stack quasi-one-dimensionally through π–π stacking interaction. Herein we report supramolecular polymerization-induced emission of two regioisomeric 2,3-diphenylthiophene derivatives functionalized with barbituric acid and tri(dodecyloxy)benzyl wedge units. In CHCl₃, both compounds are molecularly dissolved and accordingly poorly emissive due to a torsion-induced non-radiative decay. In methylcyclohexane-rich conditions, these barbiturates self-assemble to form crystalline nanofibers and exhibit strongly enhanced emission through supramolecular polymerization driven by hydrogen-bonding. Our structural analysis suggests that the barbiturates form a tape-like hydrogen-bonding motif, which is rationalized by considering that the twisted geometries of 2,3-diphenylthiophene cores prevend the competing rosettes from stacking into columnar supramolecular polymers. We also found that a small difference in the molecular polarity originating from the substitutional position of the thiophene core influences interchain association of the supramolecular polymers, affording different luminescent soft materials, gel and nanosheet.

Two barbiturate dyes with regioisomeric thiophene-cored twisted π-systems show strongly enhanced emission through supramolecular polymerization. The supramolecular polymers thus formed exhibit distinct emission colors and degree of agglomeration.     

Multiple BODIPY derivatives with 1,3,5-triazine as core: balance between fluorescence and numbers of BODIPY units

The multiple BODIPY derivatives could exhibit higher fluorescence than mono-BODIPY derivatives but also might produce the stronger aggregation-induced quenching effect. It is important to investigate the relationship between fluorescence and numbers of BODIPY units. In this work, series of multiple BODIPY derivatives 2–5 with 1,3,5-triazine as core were designed and synthesized in high yields. A subtle balance between the fluorescence enhancement of multiple BODIPY units and fluorescence quenching based on H-aggregation of multiple BODIPY units was observed for these multiple BODIPY derivatives. Compound 3 bearing two BODIPY units with triazine as core presented the strongest fluorescence emission and highest fluorescence quantum yield. Compound 3 was successfully applied in viscosity measurement, exhibiting the linear relationship between fluorescence intensity (or steady-state emission anisotropy) and viscosity.     

Orthogonally aligned cyclic BODIPY arrays with long-lived triplet excited states as efficient heavy-atom-free photosensitizers

In photosensitizers, long triplet excited state lifetimes are key to their efficient electron transfer or energy transfer processes. Herein, we report a novel class of cyclic trimeric BODIPY arrays which were efficiently generated from easily accessible meso-mesityldipyrrinone and arylboronic acids in one pot. Arylboronic acid, for the first time, was used to provide a boron source for BODIPY derivatives. Due to the well-defined and orthogonally aligned BODIPY cores as verified by X-ray crystallography, these BODIPY arrays show strong exciton coupling effects and efficient intersystem crossings, and are novel heavy-atom-free photosensitizers with a long-lived triplet excited state (lifetime up to 257.5 μs) and good reactive oxygen species generation efficiency (up to 0.72) contributed by both ¹O₂ and O₂⁻˙ under light irradiation.

Cyclic BODIPY trimers showed strong exciton coupling in singlet excited states and long-lived triplet excited states, and generated both singlet oxygen and superoxide radicals under light irradiation, giving good reactive oxygen quantum yields and promising PDT results in vitro.     

Consecutive Supramolecular Polymerization of a Rylene-Based Twistacene

The synthesis and self-assembling features of twistacene 1 are reported. The supramolecular polymerization of 1 displays a consecutive pathway to afford slipped ( AggI ) and rotationally displaced ( AggII ) aggregates conditioned by the formation of intramolecularly H-bonded pseudocycles. In methylcyclohexane, both AggI and AggII are highly stable and the interconversion of the kinetically controlled AggI into the thermodynamically controlled AggII takes several weeks to occur. The utilization of toluene as solvent changes the energetic level for both aggregates and favors a faster conversion of AggI into AggII within a period of minutes. This conversion can be accelerated by the addition of seeds. Furthermore, concentration dependent kinetic studies demonstrate the consecutive character of the supramolecular polymerization of 1 .     

Self-Assembly of Bowl-Shaped Naphthalimide-Annulated Corannulene

The self-assembly of a bowl-shaped naphthalimide-annulated corannulene of high solubility has been studied in a variety of solvents by NMR and UV/Vis spectroscopy. Evaluation by the anti-cooperative K₂-K model revealed the formation of supramolecular dimers of outstanding thermodynamic stability. Further structural proof for the almost exclusive formation of dimers over extended aggregates is demonstrated by atomic force microscopy (AFM) and diffusion ordered spectroscopy (DOSY) measurements as well as by theoretical calculations. Thus, herein we present the first report of a supramolecular dimer of an annulated corannulene derivative in solution and discuss its extraordinarily high thermodynamic stability with association constants up to >10⁶ M⁻¹ in methylcyclohexane, which is comparable to the association constants given for planar phthalocyanine and perylene bisimide dyes.     

Multiple hydrogen bonds-mediated formation of supramolecular polysiloxanes based on oligoamide duplexes

Formation of supramolecular polysiloxane polymers was studied by using oligoamide strands 1a, 2a, and 3a bearing multiple hydrogen bonds as association units. According to SEM and TEM studies one polymeric strand associated into supramolecular spherical assemblies via duplex formation. The results demonstrated the effect of such complementary oligoamides upon constructing main-chain supramolecular polymers.     

Discovery of phosphotyrosine-binding oligopeptides with supramolecular target selectivity

We demonstrate phage-display screening on self-assembled ligands that enables the identification of oligopeptides that selectively bind dynamic supramolecular targets over their unassembled counterparts. The concept is demonstrated through panning of a phage-display oligopeptide library against supramolecular tyrosine-phosphate ligands using 9-fluorenylmethoxycarbonyl-phenylalanine-tyrosine-phosphate (Fmoc-FpY) micellar aggregates as targets. The 14 selected peptides showed no sequence consensus but were enriched in cationic and proline residues. The lead peptide, KVYFSIPWRVPM-NH₂ (P7) was found to bind to the Fmoc-FpY ligand exclusively in its self-assembled state with K_D = 74 ± 3 μM. Circular dichroism, NMR and molecular dynamics simulations revealed that the peptide interacts with Fmoc-FpY through the KVYF terminus and this binding event disrupts the assembled structure. In absence of the target micellar aggregate, P7 was further found to dynamically alternate between multiple conformations, with a preferred hairpin-like conformation that was shown to contribute to supramolecular ligand binding. Three identified phages presented appreciable binding, and two showed to catalyze the hydrolysis of a model para-nitro phenol phosphate substrate, with P7 demonstrating conformation-dependent activity with a modest k_cat/K_M = 4 ± 0.3 × 10⁻⁴ M⁻¹ s⁻¹.

Phage-display screening on self-assembled tyrosine-phosphate ligands enables the identification of oligopeptides selective to dynamic supramolecular targets, with the lead peptide showing a preferred hairpin-like conformation and catalytic activity.     

Virus-like supramolecular assemblies formed by cooperation of base pairing interaction and peptidic association

A peptide nucleic acid(PNA)-peptide conjugated molecule, T′_3(AKAE)_2, was designed to have both a PNA segment for oligonucleotide binding and an ionic self-complementary peptide sequence for self-association. T′_3(AKAE)_2 could co-assemble with oligoadenines(d(A)_x) to form virus-like supramolecular structures whose morphology showed dependence on the chain length and rigidity of the d(A)_x molecules. Smaller nanospheres with diameters of 13.0±2.0 nm were produced in the case of d(A)_6. Wormlike aggregates with lengths of 20–50 nm and diameters of 15.0±2.5 nm were found in the cases of d(A)_(12), d(A)_(18), d(A)_(24) and d(A)_(30). And larger spherical aggregates with diameters of 18±5 nm came into presence in the cases of d(A)_(36) and d(A)_(42). These nanostructures were suggested to be formed under a cooperative effect of base pair recognition and peptidic association. The study provides insights into the programmed assembly of a multi-components system as well as control of the size and shape of the co-assembled structures, which is of great significance in developing gene/drug delivery systems.     

超分子聚合机理

与共价键聚合物由单体(M1)通过共价键连接不同,超分子聚合物是由单体(M2)通过非共价键连接而成的长链大分子。聚合包括分子聚合和超分子聚合。超分子聚合描述M2通过非共价键自组装形成超分子聚合物的过程,涉及氢键、π-π堆砌型和立体匹配等驱动力以及分子识别、协同性等特征,与M1通过共价键形成聚合物的过程(分子聚合)不同。为了理解超分子聚合物链结构形成机理,本文分析和讨论超分子聚合的三个主要机理:(1)线性链生长;(2)螺旋链生长;(3)拓扑链生长。     

Can a consecutive double turn conformation be considered as a peptide based molecular scaffold for supramolecular helix in the solid state?

Helices and sheets are ubiquitous in nature. However, there are also some examples of self-assembling molecules forming supramolecular helices and sheets in unnatural systems. Unlike supramolecular sheets there are a very few examples of peptide sub-units that can be used to construct supramolecular helical architectures using the backbone hydrogen bonding functionalities of peptides. In this report we describe the design and synthesis of two single turn/bend forming peptides (Boc-Phe-Aib-Ile-OMe 1 and Boc-Ala-Leu-Aib-OMe 2) (Aib: α-aminoisobutyric acid) and a series of double-turn forming peptides (Boc-Phe-Aib-Ile-Aib-OMe 3, Boc-Leu-Aib-Gly-Aib-OMe 4 and Boc-γ-Abu-Aib-Leu-Aib-OMe 5) (γ-Abu: γ-aminobutyric acid). It has been found that, in crystals, on self-assembly, single turn/bend forming peptides form either a supramolecular sheet (peptide 1) or a supramolecular helix (peptide 2), unlike self-associating double turn forming peptides, which have only the option of forming supramolecular helical assemblages.     

Self-assembly of aniline oligomers in aqueous medium

By dissolving branched or linear aniline oligomers in polar solvent and introducing their stock solution into an aqueous acidic medium, sheet-like as well as wire-like supramolecular structures with well-defined morphology were obtained, respectively. These oligomeric supramolecular structures were constructed via a post-synthetic precipitation process, indicating that aniline oligomers are capable of self-assembling in an aqueous medium, which is similar to the reaction medium of aniline chemical polymerization. Possible formation mechanisms of these supramolecular structures were proposed, i.e., sheet-like products were probably constructed by collapsed molecular chains of aniline oligomers with branched units through π–π stacking and hydrogen bonding, whereas formation of the wire-like products was attributed to “oriented-attachment” of collapsed molecular chains of linear aniline oligomers. The findings obtained in this study are supposed to provide useful clues for uncovering the formation mechanism of polyaniline micro-/nanostructures.     

Solvent-controlled E/Z isomerization vs. [2 + 2] photocycloaddition mediated by supramolecular polymerization

Control over the photochemical outcome of photochromic molecules in solution represents a major challenge, as photoexcitation often leads to multiple competing photochemical and/or supramolecular pathways resulting in complex product mixtures. Herein, we demonstrate precise and efficient control over the photochemical behaviour of cyanostilbenes in solution using a straightforward solvent-controlled approach based on supramolecular polymerization. To this end, we designed a π-extended cyanostilbene bolaamphiphile that exhibits tuneable solvent-dependent photochemical behaviour. Photoirradiation of the system in a monomeric state (in organic solvents) exclusively leads to a highly reversible and efficient E/Z photoisomerization, whereas a nearly quantitative [2 + 2] photocycloaddition into a single cyclobutane (anti head-to-tail) occurs in aqueous solutions. These results can be rationalized by a highly regular and preorganized antiparallel J-type arrangement of the cyanostilbene units that is driven by aqueous supramolecular polymerization. The presented concept demonstrates a novel approach towards solvent-selective and environmentally friendly photochemical transformations, which is expected to broaden the scope of supramolecular polymerization.

Controlled supramolecular polymerization is used to switch the photoresponsive behaviour of cyanostilbenes from a reversible E/Z photoisomerization in organic solvents to a highly efficient and selective [2 + 2] photocycloaddition in aqueous media.     

A different polynorbornene backbone by combination of two polymer growth pathways: vinylic addition and ring opening via β-C elimination

A new polynorbornene skeleton has been found that contains bicyclic norbornane units and cyclohexenyl methyl linkages. The polymers have been synthesized using a nickel catalyst in the presence of a controlled amount of ligands with low or moderate coordination ability. The backbone structure is the result of a vinylic addition polymerization, via sequential insertions of norbornene into a Ni–C bond (bicyclic units) combined with an unusual ring opening of the norbornene structure by a β-C elimination (cyclohexenyl methyl units) to give a new Ni–C(alkyl) bond that continues the polymerization. The ring opening events are favored when the rate of propagation of the vinylic addition polymerization decreases, and this can be modulated by making the coordination of norbornene to the metal center less favorable using additional ligands.

A new polynorbornene skeleton that contains a mixture of bicyclic norbornane units and cyclohexenylmethyl moieties can be obtained using a nickel catalyst.     

Terpyridine Based Metallo-Supramolecular Initiators: Towards Novel Self-Organizing Materials

[Fe(II){5,5- bis(bromomethyl)-terpyridin}₂](PF₂6)₂2 complexes were used as metallo-supramolecular initiators for the living polymerization of 2-ethyl-2-oxazolines yielding defined hydrophilic polymers with a central supramolecular building unit and star-like architectures. The living character of the polymerization allows an exact control of the molecular weight as well as the incorporation of additional (complexing) units at the polymer chain ends.     

N-Annulated Perylene Bisimides to Bias the Differentiation of Metastable Supramolecular Assemblies into J- and H-Aggregates

The unique self-assembling features of N-annulated perylene bisimides (PBIs) 1 and 2 are reported. The stability of the aggregates of diester 1 , in which no H-bonding interactions are operative, corroborates the significance of long-range van der Waals and dipole–dipole electrostatic interactions in the construction of stable supramolecular assemblies. The incorporation of amide functional groups within the N-annulated PBI in 2 stimulates pathway differentiation to achieve up to three J-type aggregates and a fourth H-type aggregate depending on the experimental conditions. The results presented demonstrate unprecedented levels of control over synthetic supramolecular self-assembly and the rich differentiation that N-annulated PBIs exhibit, opening the door to new, complex, functional supramolecular materials.