Vibrational and Conformational Analysis of 2-Methyl-1-butene

Normal coordinate calculations were made for 2-methyl-1-butene to aid in making vibrational assignments for both conformers. A partial solid-state IR spectrum was obtained that showed the presence of only the trans (C_s) conformer. Molecular mechanics and semi-empirical molecular orbital calculations were also made for both conformers.     

Conformational Analysis of 1,2-Dichlorobutane

Vibrational spectra have been published and normal coordinate calculations have been made for 1,2-dichlorobutane.^1,2 Those calculations were limited to the three conformers that had all four carbon atoms coplanar. Molecular mechanics calculations have now shown a conformer that was omitted to be the second most abundant conformer. Therefore, normal coordinate calculations have been made for this conformer and molecular mechanics calculations have been made for all possible conformers.     

Vibrational spectroscopic studies,conformations and ab initio calculations of 1,2‐bis(trifluorosilyl)ethane (SiF3CH2CH2SiF3)

Infrared spectra of 1,2‐bis(trifluorosilyl)ethane (SiF₃CH₂CH₂SiF₃) were obtained in the vapour and liquid phases, in argon matrices and in the solid phase. Raman spectra of the compound as a liquid were recorded at various temperatures between 293 and 270 K and spectra of an apparently crystalline solid were observed. The spectra revealed the existence of two conformers (anti and gauche) in the vapour, liquid and in the matrix. When the vapour was chock‐frozen on a cold finger at 78 K and annealed to 150 K, certain weak Raman bands vanished in the crystal. The vibrational spectra of the crystal demonstrated mutual exclusion between IR and Raman bands in accordance with C_2h symmetry. Intensity variations between 293 and 270 K of pairs of various Raman bands gave ΔH(gauche—anti) = 5.6 ± 0.5 kJ mol⁻¹ in the liquid, suggesting 85% anti and 15% gauche in equilibrium at room temperature. Annealing experiments indicate that the anti conformer also has a lower energy in the argon matrices, is the low‐energy conformer in the liquid and is also present in the crystal. The spectra of both conformers have been interpreted, and 34 anti and 17 gauche bands were tentatively identified. Ab initio and density functional theory (DFT) calculations were performed giving optimized geometries, infrared and Raman intensities and anharmonic vibrational frequencies for both conformers. The conformational energy difference derived in CBS‐QB3 and in G3 calculations was 5 kJ mol⁻¹. Copyright © 2009 John Wiley & Sons, Ltd.     

Conformational stability from Raman spectra,r0 structural parameters,and vibrational assignment of methylcyclohexane

The Raman spectra (3500–50 cm⁻¹) of the liquid and solid methylcyclohexane and the infrared spectra of the gas and solid methylcyclohexane have been recorded. The Raman band at 754 cm⁻¹ in the liquid has been confidently assigned to the less stable axial conformer and its intensity was recorded as a function of temperature from 25 to −95 °C. By the utilization of 15 different temperatures, the enthalpy difference between the more stable chair‐equatorial conformer and the chair‐axial form was determined to be 712 ± 71 cm⁻¹ (8.50 ± 0.84 kJ/mol). The ab initio predicted value of 710 cm⁻¹ (8.50 kJ/mol) from the MP2(full)/6‐311G(2d,2p) calculations with and without diffuse functions is in excellent agreement. The harmonic force fields, infrared intensities, Raman activities, depolarization ratios, and vibrational wavenumbers have been obtained for both conformers from MP2(full)/6‐31G(d) ab initio calculations. With two scaling factors of 0.88 for the C‐H stretches and 0.9 for the remaining ones, the fundamental wavenumbers have been predicted and along with the depolarization values and infrared band contours (B‐type for A″ modes) a complete vibrational assignment has been made for the chair‐equatorial conformer. Predicted r₀ structural parameters have been provided from adjusted parameters from ab initio MP2(full)/6‐311+G(d,p) calculations. The results are discussed and compared with the corresponding properties of some similar molecules. Copyright © 2009 John Wiley & Sons, Ltd.     

Vibrational Analysis of 1,2-Dibromopropane and 1,2-Dibromopropane-D6

Abstract

Infrared spectra were obtained for 1,2-dibromopropane-d₆ in the liquid and in the unannealed and annealed solid states. Vibrational assignments were made for the three conformers of 1,2-dibromopropane and the three conformers of 1,2-dibromopropane-d₆ with the aid of normal coordinate calculations. All three possible conformers of CD₂BrCDBrCD₃ were found to be present in the liquid and unannealed solid, but the P_HS_HH conformer was absent in the annealed solid.     

Two conformers of ethyl pivalate studied by microwave spectroscopy

The rotational spectra of two conformers of ethyl pivalate, (CH₃)₃C-COO-C₂H₅ have been recorded by molecular beam FT microwave spectroscopy. The analysis yielded a set of three rotational constants and five quartic centrifugal distortion constants for each conformer. The conformers were identified by comparing the experimental rotational constants with those obtained by ab initio calculations at MP2/6-311++G∗∗ level. One conformer has C_s symmetry, the other one forms a pair of enantiomers with C₁ symmetry. Additionally, the torsional potentials of the tert-butyl group and of the methyl groups were obtained by ab initio methods.     

Gas‐phase structure and new vibrational study of methyl trifluoroacetate (CF3C(O)OCH3)

The molecular structure of methyl trifluoroacetate (CF₃C(O)OCH₃) has been determined in the gas phase from electron‐diffraction data supplemented by ab initio (MP2) and DFT calculations using different basis sets. Experimental data revealed an anti conformation with a dihedral angle θ (CCOC) = 180°. Quantum mechanical calculations indicate the possible existence of two conformers, differing by a rotation about the C(O) O bond. The global minimum represents a C_s‐symmetric structure in which the CF₃ group has the anti orientation with respect to the CH₃ group, but there is another potential minimum, much higher in energy, representing a C_s‐symmetric structure with a cis conformation. The preference for the anti conformation was studied using the total energy scheme and the natural bond orbital (NBO) partition scheme. Additionally, the total potential energy has been deconvoluted using a six‐fold decomposition in terms of a Fourier‐type expansion, showing that the electrostatic and steric contributions are dominant in stabilizing the anti conformer. Infrared spectra of CF₃C(O)OCH₃ were obtained for the gaseous and liquid phases, while the Raman spectrum was recorded for the liquid phase. Harmonic vibrational frequencies and a scaled force field have been calculated, leading to a final root mean‐square deviation of 9 cm⁻¹ when comparing experimental and calculated frequencies. Copyright © 2009 John Wiley & Sons, Ltd.     

FT‐Raman,FT‐IR spectra and DFT calculations on monomeric and dimeric structures of 5‐fluoro‐ and 5‐chloro‐salicylic acid

The experimental and theoretical study on the structures and vibrations of 5‐fluoro‐salicylic acid and 5‐chloro‐salicylic acid (5‐FSA and 5‐ClSA, C₇H₅FO₃ and C₇H₅ClO₃) is presented. The Fourier transform infrared spectra (4000–400 cm⁻¹) and the Fourier transform Raman spectra (4000–50 cm⁻¹) of the title molecules in the solid phase were recorded. The molecular structures, vibrational wavenumbers, infrared intensities, Raman intensities and Raman scattering activities were calculated for a pair of molecules linked by the intermolecular O H···O hydrogen bond. The geometrical parameters and energies of 5‐FSA and 5ClSA were obtained for all eight conformers/isomers from density functional theory (DFT) (B3LYP) with 6‐311++G(d,p) basis set calculations. The computational results identified the most stable conformer of 5‐FSA and 5‐ClSA as the C1 form. The complete assignments were performed on the basis of the total energy distribution (TED) of the vibrational modes, calculated with scaled quantum mechanics (SQM) method. The spectroscopic and theoretical results were compared with the corresponding properties for 5‐FSA and 5‐ClSA monomers and dimer of C1 conformer. The optimized bond lengths, bond angles and calculated wavenumbers showed the best agreement with the experimental results. Copyright © 2010 John Wiley & Sons, Ltd.     

Infrared and Raman Spectra,conformations, ab initio calculations and spectral assignments of 1,3‐disilabutane (SiH3CH2SiH2CH3)

Raman spectra of 1,3‐disilabutane (SiH₃CH₂SiH₂CH₃) as a liquid were recorded at 293 K and as a solid at 78 K. In the Raman cryostat at 78 K an amorphous phase was first formed, giving a spectrum similar to that of the liquid. After annealing to 120 K, the sample crystallized and large changes occurred in the spectra since more than 20 bands present in the amorphous solid phase vanished. These spectral changes made it possible to assign Raman bands to the anti or gauche conformers with confidence. Additional Raman spectra were recorded of the liquid at 14 temperatures between 293 and 137 K. Some Raman bands changed their peak heights with temperature but were countered by changes in linewidths, and from three band pairs assigned to the anti and gauche conformers, the conformational enthalpy difference Δ_confH(gauche–anti) was found to be 0 ± 0.3 kJ mol⁻¹ in the liquid. Infrared spectra were obtained in the vapor and in the liquid phases at ambient temperature and in the solid phases at 78 K in the range 4000–400 cm⁻¹. The sample crystallized immediately when deposited on the CsI window at 78 K, and many bands present in the vapor and liquid disappeared. Additional infrared spectra in argon matrixes at 5 K were recorded before and after annealing to temperatures 20–34 K. Quantum chemical calculations were carried out at the HF, MP2 and B3LYP levels with a variety of basis sets. The HF and DFT calculations suggested the anti conformer as the more stable one by ca 1 kJ mol⁻¹, while the MP2 results favored gauche by up to 0.4 kJ mol⁻¹. The Complete Basis Set method CBS‐QB3 gave an energy difference of 0.1 kJ mol⁻¹, with anti as the more stable one. Scaled force fields from B3LYP/cc‐pVQZ calculations gave vibrational wavenumbers and band intensities for the two conformers. Copyright © 2007 John Wiley & Sons, Ltd.     

Microwave spectrum of the complex of 3,3,3-trifluoro-2-(trifluoromethyl)propanoic acid and formic acid

ABSTRACT

We report the first high resolution spectroscopic observation of the complex of 3,3,3-trifluoro-2-(trifluoromethyl)propanoic acid (TTPA) and formic acid. The rotational spectra were measured using a broadband chirped pulse and a narrow band cavity-based Fourier transform microwave spectrometer in the 8–10?GHz range. The conformational landscape of the TTPA-formic acid complex was explored at several levels of theory. The two most stable TTPA-formic acid conformers are of similar stability and feature the usual cyclic carboxylic double hydrogen bonded ring. Based on the broadband spectra obtained, only one stable heterodimer conformer was observed. We explain the absence of the second conformer to be a result of a double hydrogen tunnelling motion which converts the less stable heterodimer to the one observed in the jet expansion. Further CCSD(T) relative energy calculations confirm that the heterodimer conformer detected contains the most stable TTPA monomeric subunit. It is interesting to note that hydrogen bonding with formic acid offers a new path to effectively convert the less stable TTPA subunit to the most stable one in the jet expansion, while both TTPA monomeric conformers were detected in the same experiment.     

Experimental and theoretical structure and vibrational analysis of ethyl trifluoroacetate,CF3CO2CH2CH3

The molecular structure and conformational properties of ethyl trifluoroacetate, CF₃CO₂CH₂CH₃, were determined in the gas phase by electron diffraction, and vibrational spectroscopy (IR and Raman). The experimental investigations were supplemented by ab initio (MP2) and DFT quantum chemical calculations at different levels of theory. Experimental and theoretical methods result in two structures with C_s (anti–anti) and C₁ (anti–gauche) symmetries, the former being slightly more stable than the latter. The electron‐diffraction data are best fitted with a mixture of 56% anti–gauche and 44% anti–anti conformers. The conformational preference was also studied using the total energy scheme, and the natural bond orbital scheme. Also, the infrared spectra of CF₃CO₂CH₂CH₃ are reported for the gas, liquid and solid states, as is the Raman spectrum of the liquid. The comparison of experimental averaged IR spectra of C_s and C₁ conformers provides evidence for the predicted conformations in the IR spectra. Harmonic vibrational wavenumbers and scaled force fields have been calculated for both conformers. Copyright © 2009 John Wiley & Sons, Ltd.     

Vibrational spectroscopy and DFT calculations of N,N′‐dicyclohexylcarbodiimide

Infrared (IR) and Raman spectra were obtained for N,N′‐dicyclohexylcarbodiimide (DCC) in the solid state and in CHCl₃ solution. Structures and vibrational spectra of isolated, gas‐phase DCC molecules with C₂ and C_i symmetries, computed at the B3‐LYP/cc‐pVTZ level, show that the IR and Raman spectra provide convincing evidence for a C₂ structure in both the solid state and in CHCl₃ solution. Using a scaled quantum‐chemical force field, these density functional theory calculations have provided detailed assignments of the observed IR and Raman bands in terms of potential energy distributions. Comparison of solid‐state and solution spectra, together with a Raman study of the melting behaviour of DCC, revealed that no solid‐state effects were evident in the spectra. Copyright © 2010 John Wiley & Sons, Ltd.     

Spectroscopic and ab initio characterization of the conformational states of the bis(perfluoro‐ ethanesulfonyl)imide anion (BETI−)

Ab initio calculations were combined with infrared and Raman studies to spectroscopically distinguish the two conformers of the BETI⁻ or bis(perfluoroethanesulfonyl)imide anion, [N(SO₂C₂F₅)₂]⁻, as was previously done for [N(SO₂CF₃)₂]⁻, the TFSI⁻ anion. BETI⁻ is predicted to exist, as does TFSI⁻, in two conformational states of C₂ and C₁ symmetries, the former being more stable by about 6 kJ mol⁻¹. This conformational isomerism produces weak Raman splittings that can be resolved only at low temperatures. Thus, solutions of LiBETI with glymes cooled down to 113 K exhibit a very intense Raman doublet at ∼745–740 cm⁻¹ characteristic of a quenched conformational equilibrium between the C₂ and C₁ conformers. Annealing of the (G3)₂:LiBETI solvate, where G3 is triglyme, leads to an ordered crystalline phase with all the anions in the C₂ conformation, as in the reference salt Me₄NBETI. This conclusion cannot be extended to all the systems in which the BETI⁻ anion interacts weakly with the cation, however, since the diglyme solvate, (G2)₂:LiBETI, contains both C₁ and C₂ anion conformers (in 2:1 ratio) at low temperatures independent of the sample's thermal history. The conformational splittings are larger in infrared, as illustrated by two absorption bands at 601 and 615 cm⁻¹ associated with the C₂ and C₁ anion conformers, respectively. It is possible to follow the relative intensities of these bands in a LiBETI solution with diglyme above room temperature up to 387 K. The C₂ conformer is found to be more stable than C₁ by 4.7 ± 0.7 kJ mol⁻¹. Copyright © 2006 John Wiley & Sons, Ltd.     

Organic compounds in the C3H6O3 family: Microwave spectrum of cis-cis dimethyl carbonate

Geometry optimization calculations on 13 members of the C₃H₆O₃ family of organic species have been carried out to determine their relative binding energies. Dimethyl carbonate [(CH₃)₂CO₃] is one of the lower energy species in this family, which includes the C₃-sugars 1,3-dihydroxyacetone and glyceraldehyde. The microwave spectrum of dimethyl carbonate has been measured over the frequency range 8.4-25.3 GHz with several pulsed-beam Fourier-transform microwave spectrometers and from 227 GHz to 350 GHz with direct absorption spectrometers. The spectrum of the lowest-energy cis-cis conformer of dimethyl carbonate has been assigned, and ab initio electronic structure calculations of the three possible conformers have been performed. Stark effect measurements were carried out on the cis-cis conformer to provide accurate determinations of the dipole moment components.     

The geometry of organophosphonates: Fourier-transform microwave spectroscopy and ab initio study of diethyl methylphosphonate, diethyl ethylphosphonate, and diisopropyl methylphosphonate

The rotational spectra of diethyl methylphosphonate (DEMP), diethyl ethylphosphonate (DEEP), and diisopropyl methylphosphonate (DIMP) in supersonic expansions have been acquired using Fourier-transform microwave spectroscopy. Spectroscopic constants have been determined for five distinct conformers of the three molecules. Experimental data have been compared to ab initio calculations performed for each species. For both DEMP and DEEP, the calculations indicate the presence of several low-energy conformers (i.e., ?∼400 cm⁻¹ above the ground state) may be present at room temperature (300 K) for both DEMP and DEEP. When entrained in a supersonic expansion, the rotational temperatures of the samples are much colder (∼2 K); nonetheless, spectra from three conformers of DEEP are still observed experimentally, whereas only one conformer of DEMP is observed. In contrast, only a single low-energy conformer of DIMP is predicted by theory, and is present in the molecular beam. The relative abundance of low-energy conformers of DEMP and DEEP is attributed to the flexibility of the ethoxy groups within each molecule. The presence of multiple DEEP conformers in the supersonic beam indicates a more complex potential energy surface for this molecule that is directly related to conformational shifts of the PCH₂CH₃ group. Conversely, the absence of low-energy conformers of DIMP is attributed to steric hindrance between isopropoxy groups in the molecule. The internal rotation barrier for the PCH₃ group in DEMP and DIMP is compared to that found in DMMP and several phosphonate-based chemical weapon agents.     

Conformational energies of silacyclohexanes C5H10SiHMe,C5H10SiH(CF3) and C5H10SiCl(SiCl3) from variable temperature Raman spectra

From variable temperature vibrational Raman spectra, the axial/equatorial enthalpy differences for the substituted silacyclohexanes C₅H₁₀SiHMe, C₅H₁₀SiH(CF₃) and C₅H₁₀SiCl(SiCl₃) were determined. The pure liquids and solutions in various solvents were investigated. Preferred conformations are equatorial for methylsilacyclohexane and axial for trifluoromethylsilacyclohexane, consistent with earlier results from nuclear magnetic resonance experiments and ab initio calculations. For C₅H₁₀SiCl(SiCl₃) an enthalpy difference close to zero was found, which is supported by high‐level which is supported by high‐level quantum chemical calculations at the second‐order Møller‐Plesset (MP2) and coupled cluster with single, double, and perturbative triple excitations (CCSD(T)) levels, which employed various basis sets. A novel synthesis for C₅H₁₀SiCl(SiCl₃) was developed using ClMg(CH₂)₅MgCl instead of BrMg(CH₂)₅MgBr as a starting material. The procedure avoids the formation of partially brominated products, facilitating the purification of the compound. ¹H, ¹³C and ²⁹Si nuclear magnetic resonance data are reported. Copyright © 2012 John Wiley & Sons, Ltd.     

Some CNDO Calculations and Structural Spectroscopic Studies of Paracetamol Complexes

Through complete neglect of differential overlap (CNDO) calculations of the electronic energy among different possible structures of paracetamol (PA) molecule, it has been concluded that its structure has C_s point group symmetry of the cis‐form in which the methyl group has a restricted free rotation around its bond with the carbon atom of the amide group. The electronic spectra of PA compound were studied in different polar and nonpolar solvents. The temperature effect on the electronic spectra confirms the presence of one conformer only. The hydrogen bonding and the orientation energies of the polar solvents were determined from the studies of mixed solvents. Complexes of PA with metal ions M(II) (Cu⁺⁺, Zn⁺⁺, or Fe⁺⁺) of ratio 2:1, respectively, were prepared, and their structure has been confirmed by elemental analysis, atomic absorption spectra, IR spectra, and ¹H‐NMR spectra. It has been concluded that the structure of the complexes has C_2h point group symmetry in which two PA molecules are chelated to any one of the metal ions Cu⁺⁺, Zn⁺⁺, and Fe⁺⁺.     

Based on charge-transfer interaction organic light-response materials: From sphere-like nanoparticles to fibers

We employed a potent and versatile ionic self-assembly (ISA) to prepare stimuli-responsive supramolecular materials using charged surfactants, N-dodecyl-4-(1-methylpip-erazine)-1,8-naphthalimide iodine [C₁₂ndi]I and oppositely charged small molecule, 4-(phenylazo)benzoic acid sodium (PBAS). By transmission electron microscopy, nanospheres could be observed to transform into nanofibers upon irradiated with UV light (365 nm) for 1 h. The UV–vis absorption spectra and fluorescence spectra of the fibers indicate that charge-transfer interaction is regarded as the driving force for the formation of fibers. Density functional theory (DFT) calculations prove that the π–π stacking and electrostatic interactions between [C₁₂ndi]I and PBAS contributes significantly to the resulting aggregates. The supramolecular fibers have the potential applications in some fields, e.g. drug delivery and electro-optical devices.     

Mechanical properties,lattice thermal conductivity,infrared and Raman spectrum of the fullerite C24

Lightweight carbon materials with excellent thermal and mechanical properties have important applications in aerospace industry. In this study, the stability, mechanical properties, lattice thermal conductivity, electronic structure, infrared and Raman spectrum of sp³ hybridized low-density fullerite C₂₄ were investigated according to density functional theory (DFT) calculations. It was found that the fullerite C₂₄ was both thermodynamic and dynamic stable. Quasi-harmonic approximation and Grüneisen parameter calculations clarified why the fullerite C₂₄ had a positive thermal expansion coefficient at low temperature. The fullerite C₂₄ also exhibited excellent mechanical properties. Interestingly, the Vickers hardness of carbon allotropes was found to almost be linear proportional to the density of a carbon material. HSE06 electronic structure calculations showed that it was a semiconductor with direct bandgap of 2.56 eV. Anharmonic lattice dynamic calculations showed that its thermal conductivity was higher than semiconductor silicon. Besides, Raman and infrared active modes as well as the corresponding spectra were presented.     

Structural conformations and electronic interactions of the natural product,oroxylin: a vibrational spectroscopic study

The oroxylin, 5,7‐dihydroxy 6‐methoxy flavone is a potent natural product extracted from ‘Vitex peduncularis’. Density functional theory (DFT) at B3LYP/6‐311G(d,p) level has been used to compute energies of different conformers of oroxylin to find out their stability, the optimized geometry of the most stable conformer and its vibrational spectrum. The conformer ORLN‐1 with torsion angles 0, 180, 180 and 0 degrees, respectively, for H₁₃ O₁₂ C₆ C₅, H₁₄ O₁₀ C₄ C₅, H₁₃ O₁₂ C₆ C₅ and H₁₄ O₁₀ C₄ C₅ is found to be most stable. The optimized geometry reveals that the dihedral angle φ between phenyl ring B and the chrome part of the molecule in − 19.21° is due to the repulsive force due to steric interaction between the ortho‐hydrogen atom H₂₉ of the B ring and H₁₈ of the ring C (H₂₉·H₁₈ = 2.198 Å). A vibrational analysis based on the near‐infrared Fourier transform(NIR‐FT) Raman, Fourier transform‐infrared (FT‐IR) and the computed spectrum reveals that the methoxy group is influenced by the oxygen lone pair‐aryl p_z orbital by back donation. Hence the stretching and bending vibrational modes of the methoxy group possess the lowest wavenumber from the normal values of methyl group. The carbonyl stretching vibrations have been lowered due to conjugation and hydrogen bonding in the molecules. The intramolecular H‐bonding and nonbonded intramolecular interactions shift the band position of O₁₀ H₁₄ and O₁₂ H₁₃ stretching modes, which is justified by DFT results. Copyright © 2008 John Wiley & Sons, Ltd.