NMR and Structural and Conformational Features of 2′-Hydroxychalcones and Flavones

New 2′-hydroxychalcone and flavone derivatives have been synthesised. Their [¹H] and [¹³C] NMR spectra were assigned by the application of COSY and HETCOR experiments and allowed the discussion of some structural aspects. It was shown on the basis of NOE experiments some configurational and conformational features of both type of compounds.     

13C-NMR Assignments for Methyls and Quaternary Carbons of the Limonoid Obacunone

The high field ¹H and ¹³C resonances of obacunone were established by a series of I D and 2D NMR experiments. The ¹³C-NMR signals of the five tertiary methyl groups and all quatenary carbons were unambiguously assigned. The results confirm the stereochemical assignments at all stereogenic centres.     

Development of high resolution 3D hyperpolarized carbon-13 MR molecular imaging techniques

The goal of this project was to develop and apply techniques for T₂ mapping and 3D high resolution (1.5 mm isotropic; 0.003 cm³) ¹³C imaging of hyperpolarized (HP) probes [1-¹³C]lactate, [1-¹³C]pyruvate, [2-¹³C]pyruvate, and [¹³C,¹⁵N₂]urea in vivo. A specialized 2D bSSFP sequence was implemented on a clinical 3T scanner and used to obtain the first high resolution T₂ maps of these different hyperpolarized compounds in both rats and tumor-bearing mice. These maps were first used to optimize timings for highest SNR for single time-point 3D bSSFP acquisitions with a 1.5 mm isotropic spatial resolution of normal rats. This 3D acquisition approach was extended to serial dynamic imaging with 2-fold compressed sensing acceleration without changing spatial resolution. The T₂ mapping experiments yielded measurements of T₂ values of > 1 s for all compounds within rat kidneys/vasculature and TRAMP tumors, except for [2-¹³C]pyruvate which was ~ 730 ms and ~ 320 ms, respectively. The high resolution 3D imaging enabled visualization the biodistribution of [1-¹³C]lactate, [1-¹³C]pyruvate, and [2-¹³C]pyruvate within different kidney compartments as well as in the vasculature. While the mouse anatomy is smaller, the resolution was also sufficient to image the distribution of all compounds within kidney, vasculature, and tumor. The development of the specialized 3D sequence with compressed sensing provided improved structural and functional assessments at a high (0.003 cm³) spatial and 2 s temporal resolution in vivo utilizing HP ¹³C substrates by exploiting their long T₂ values. This 1.5 mm isotropic resolution is comparable to ¹H imaging and application of this approach could be extended to future studies of uptake, metabolism, and perfusion in cancer and other disease models and may ultimately be of value for clinical imaging.     

Spectral Data of Chemical Modification Products of Costunolide

Epoxidation of costunolide (1) yielded parthenolide (3), 1, 10-epoxycostunolide (4), and the cyclization products of 4, santamarin (5), reynosin (6), magnolialide (7) and a 1, 4-epoxyeudesmanolide (8). Reduction of santamarin (5) with sodium borohydride afforded 11, 13-dihydrosantamarin (9) and an eudesmen-triol (10). Reduction of reynosin (6) provided 11, 13-dihydroreynosin (11) and the two eudesman-triols 12 and 13. The structures of the new compounds were elucidated by ID and 2D ¹H and ¹³C NMR spectral methods.     

Regioisomers Differentiation of 5- (and 7)-Oxo-tetrahydro-7 (and 5)H-thiazolo[3,2-a]pyrimidines. NMR Spectroscopic Studies

Abstract

Reaction of 2-aminothiazoline with an aromatic aldehyde and diethylmalonate, in basic medium afforded two kinds of regioisomers: 5-oxo and 7-oxo-tetrahydrothioazolopyrimidines. Assignment of the structures of 5-oxo-7-phenyl-2,3,6,7-tetrahydro-5H -thiazolo[3,2-a] pyrimidine-6-ethylcarboxylate (1) and 7-oxo-5-phenyl-2,3,5,6-tetrahydro-7H -thiazolo[3,2-a] pyrimidine-6-ethylcarboxylate (2) were performed using ¹H and ¹³C NMR spectroscopy, including NOE experiments. For each regioisomer, only R?S? trans-diaxial diastereoisomers were isolated and characterized.     

C-13 and H-1 NMR Assignments of the Chamigrenes Prepacifenol and Dehydroxyprepacifenol Epoxioes

A complete assignment of the signals in the ¹H and ¹³C NMR spectra and the stereostructural analysis of the compounds prepacifenol epoxide and the new dehydroxyprepacifenol epoxide are presented. These compounds were extracted from the marine mollusc Aplysia dactylomela and represent the first occurrence of chamigrenes found in Brazilian waters. The NMR analyses are supported by NOE difference and COSY experiments and also by gradient selected HMBC, HSQC-TOCSY and HSQC-DE. ¹H spectra simulations were done for the final fitting of the chemical shifts and coupling constants.     

Stereochemical Elucidation of Norbornene Derivatives Synthesized as Leukotriene D4 Receptor Antagonists

The complete ¹H and ¹³C NMR assignment and stereochemical elucidation of four norbornene derivatives (1–4) are presented. These derivatives were obtained by an asymmetric Diels–Alder reaction of a chiral dienophile, from D‐glucose, as leukotriene D4 receptor antagonists. NOE measurements of the four products between H‐7b and H‐5 readily allowed discrimination between exo‐ (2, 4) and endo‐ (1, 3) diastereomers with respect to methyl carboxylate and tetrahydrofuro[1,3]dioxolyl groups. Further discrimination and subsequent absolute configuration determination of the two endo‐ and two exo‐ products were performed by NOE peak measurements and molecular modeling calculations of relative interproton distances of the most stable conformations of each isomer.     

Oxovanadium (IV) complexes of bidentate [N,O] donor Schiff-base ligands: synthesis and mesomorphism

A series of new oxovanadium(IV) Schiff-base complexes of the type [VO(L)₂], [L?=?N-(4-n-alkoxysalicylaldimine)-4′-dodecyloxyaniline, n?=?6, 8, 16, and 18] have been synthesized. The compounds were characterized by FT-IR, ¹H-NMR, ¹³C-NMR, UV-Vis, FAB-mass, and magnetic susceptibility measurements. The mesomorphic behavior of the compounds was studied by polarized optical microscopy and differential scanning calorimetry. The compounds are all highly thermally stable exhibiting smectic mesomorphism. Non-electrolytic nature of the complexes was ascertained by solution electrical conductance measurements. Cyclic voltammetry revealed a quasireversible single-electron response for VO(V)/VO(IV) couple. A ν_V=O stretching mode at ～970?cm^?1 indicates absence of any intermolecular V=O?···?V=O interactions. Density functional theory study was carried out using DMol3 at BLYP/DNP level to determine energy optimized structure revealed a distorted square pyramidal geometry for the vanadyl complexes.     

Stable isotope-enhanced two- and three-dimensional diffusion ordered C NMR spectroscopy (SIE-DOSY C NMR)

The feasibility of obtaining high quality homonuclear or heteronuclear diffusion-ordered ¹³C NMR data is shown to be greatly improved by using ¹³C isotopically-enriched samples. Stable isotope-enhanced diffusion ordered (SIE-DOSY) ¹³C NMR has been applied to ¹³C-enriched carbohydrates, and has been used to determine diffusion coefficients for pentose and hexose monosaccharides, and a disaccharide and trisaccharide. These 2D spectra were obtained with as little as 8 min of acquisition time. Fully resolved 3D DOSY-HMQC NMR spectra of [U-¹³C]xylose, [U-¹³C]glucose, and [1-¹³C^gal]lactose were obtained in 5 h. Sample derivatization with [carbonyl-¹³C]acetate (peracetylation) extends the usefulness of the technique to included non-labeled sugars; the ¹³C-carbonyl – carbohydrate ring proton ¹H–¹³C correlations also provide additional structural information, as shown for the 3-D DOSY-HMQC analysis of a mixture of maltotriose and lactose per-[carbonyl-¹³C]acetates.     

Comparison Between the IR Spectra and the Structure of the Two Conformations of a Diazabicyclanol

Abstract

In the two stable conformations of the diazabicyclanol 3, 7-dimethyl-3, 7-diazabicyclo[3. 3. 1]nonan-9-ol, chair-chair (Va) and chair-boat (Vb), the infrared spectra (200–4000 cm^?1) were recorded, compared and their vibrations analysed. Using the AMI senlempirical method, the geometry was fully optimized in both forms, and the theoretical Infrared spectra were calculated and compared. In the (Vb) conformation, the IR spectra were recorded in CCl₃D, CCl₄ and S₂C solvents. Some correlations were established.     

Effect of amino acid modifications on the molecular structure of adsorbed and nonadsorbed bombesin 6–14 fragments on an electrochemically roughened silver surface

This work used infrared absorption and Raman spectroscopy to determine the structure of seven modified fragments (residues 6–14 of the polypeptide chain) of bombesin (BN^6–14). The peptides studied are cyclo[D ‐Phe⁶, His⁷, Leu¹⁴]BN^6–14, [D ‐Phe⁶, Leu‐NHEt¹³, des‐Met¹⁴]BN^6–14, [D ‐Phe⁶, Leu¹³‐®‐p‐chloro‐Phe¹⁴]BN^6–14, [D ‐Phe⁶, β‐Ala¹¹, Phe¹³, Nle¹⁴]BN^6–14, [D ‐Tyr⁶, β‐Ala¹¹, Phe¹³, Nle¹⁴]BN^6–14, [D ‐Tyr⁶, β‐Phe¹¹, Phe¹³, Nle¹⁴OH]BN^6–14 and [D ‐Cys⁶, Asn⁷, D ‐Ala¹¹, Cys¹⁴]BN^6–14. These peptides are potent bombesin agonists useful in the treatment of tumors. Surface‐enhanced Raman scattering (SERS) spectroscopy was also used to examine the behavior of these molecules on an electrochemically roughened silver surface. The SERS spectra reveal that substituting native amino acids in these molecules with synthetic ones changes their adsorption state slightly on an electrochemically roughened surface of silver. The peptides [D ‐Tyr⁶, β‐Ala¹¹, Phe¹³, Nle¹⁴]BN^6–14 and [D ‐Tyr⁶, β‐Phe¹¹, Phe¹³, Nle¹⁴OH]BN^6–14 tend to adsorb strongly on this surface via C fragment (∼1400 cm⁻¹). The observed medium enhancement of the Trp⁸ residue and amide bond Raman signals indicate further interactions between these fragments and the surface. [D ‐Phe⁶, Leu‐NHEt¹³, des‐Met¹⁴]BN^6–14 and [D ‐Cys⁶, Asn⁷, D ‐Ala¹¹, Cys¹⁴]BN^6–14 are shown to be coordinated to the silver through  CONH , CO, and the indole ring. The strongest SERS bands (∼1506, ∼1275, ∼1149, and ∼1007 cm⁻¹) of [D ‐Phe⁶, Leu¹³‐®‐p‐chloro‐Phe¹⁴]BN^6–14 and [D ‐Phe⁶, β‐Ala¹¹, Phe¹³, Nle¹⁴]BN^6–14 suggest that these two peptides bind to the silver via Trp⁸ and  CONH . In the case of cyclo[D ‐Phe⁶, His⁷, Leu¹⁴]BN^6–14, the formation of a peptide/Ag complex is confirmed by the strong SERS bands involving Trp⁸ and  CONH vibrations, which are accompanied by a SERS signal due to the CO vibrations. For these analogs, the relative potency for inhibition of binding of ¹²⁵I‐[Tyr⁴]BN to rat pancreas acini cells was correlated with the behavior of the amide bond on the silver surface, while the contribution of the structural components to the ability to interact with the rGRP‐R was correlated with the SERS patterns. Copyright © 2008 John Wiley & Sons, Ltd.     

NMR and DFT calculation study on structures of 2‐[2‐nitro‐4‐(trifluoromethyl)benzoyl]cyclohexane‐1,3‐dione (NTBC) and its two metabolites isolated from urine of patients suffering from tyrosinemia type I

2‐[2‐Nitro‐4‐(trifluoromethyl)benzoyl]cyclohexane‐1,3‐dione (NTBC) is an active component of nitisinone, a medicine against tyrosinemia type I. Using ¹H, ¹³C and ¹⁹F NMR spectroscopy it has been found that in the urine of patients treated with nitisinone two compounds possessing CF₃ group are always present. They have been isolated by using TLC technique and identified as 4‐hydroxy‐2‐[2‐nitro‐4‐(trifluoromethyl)benzoyl]cyclohexane‐1,3‐dione and 5‐hydroxy‐2‐[2‐nitro‐4‐(trifluoromethyl)benzoyl]cyclohexane‐1,3‐dione, the latter being previously unknown. The constitution, tautomerism and stereochemistry of these compounds have been thoroughly investigated using ¹H and ¹³C NMR spectroscopy supported by theoretical calculations. Molecular structures have been optimized using density functional theory (DFT) with PBE1PBE functional and 6‐31G* basis set. In NMR parameter calculations, the larger 6‐311++G(2d,p) basis set has been used. At both calculation stages, the polarizable continuum model of the solvent has been employed. Copyright © 2010 John Wiley & Sons, Ltd.     

Influence of backbone length and synthetic mutations on orientation of neurotensin fragments adsorbed onto a colloidal silver surface: SERS studies

Neurotensin (NT) is a naturally occurring neurotransmitter that mediates the metabotropic seven‐transmembrane G protein‐coupled receptors, namely NTR1s, richly expressed on tumor surface. Therefore, mutated active molecular fragments of NT that possess selective antagonist or weak agonist properties and the high affinity to NTR1 have attracted considerable interest for use in thrombus, inflammation, and imaging/treatment of tumors. In this work, SERS spectra of three N‐terminal fragments of human NT (NT^1‐6, NT^1‐8, and NT^1‐11) and six specifically mutated C‐terminal fragments of human NT, including NT^8‐13, [Dab⁹]NT^8‐13, [Lys⁸,Lys⁹]NT^8‐13, [Lys⁸‐(®)‐Lys⁹]NT^8‐13, [Lys⁹,Trp¹¹,Glu¹²]NT^8‐13, and NT^9‐13, adsorbed onto nanometer‐sized colloidal silver particles in an aqueous solution at pH level of the solution 2 are presented. A comparison was made between the structures of the native and mutated fragments to determine how changes in peptide length and mutations of the structure influenced the NT adsorption properties. Based on the interpretation of the obtained data, we showed that all of the investigated NT fragments, excluding [Lys⁹,Trp¹¹,Glu¹²]NT^8‐13, tended to adsorb on the silver surface mainly through the L‐tyrosine residue and the carboxylate group. The Tyr ring lied more‐or‐less flat on the silver surface. The hydrogen atom from the phenol group dissociated upon binding. On the other hand, [Lys⁹,Trp¹¹,Glu¹²]NT^8‐13 bound to this substrate through the close to vertical co‐pyrrole ring of the indole ring (Trp¹¹) and –COO^‐ . Comparison of the presented data with those obtained earlier for NT allows to suggest that in the case of naturally occurring neurotensin, both Tyr residues together with the carboxylate group play crucial role in the binding to the nanometer‐sized colloidal silver particles. This geometry of binding forces the NT molecule to lay flat on the surface. Copyright © 2012 John Wiley & Sons, Ltd.     

Measuring the link between cardiac mechanical function and metabolism during hyperpolarized 13C-pyruvate magnetic resonance experiments

PurposeThe goal of this study was to develop a methodology to investigate the relationship between contractile function and hyperpolarized (HP) [1-¹³C]pyruvate metabolism in a small animal model. To achieve sufficient signal from HP ¹³C compounds, HP ¹³C MRS/MRSI has required relatively large infusion volumes relative to the total blood volume in small animal models, which may affect cardiac function.MethodsEight female Sprague Dawley rats were imaged on a 4.7T scanner with a dual tuned ¹H/¹³C volume coil. ECG and respiratory gated k-t spiral MRSI and an IDEAL based reconstruction to determine [1-¹³C]pyruvate metabolism in the myocardium. This was coupled with ¹H cine MRI to determine ventricular volumes and mechanical function pre- and post-infusion of [1-¹³C]pyruvate. For comparison to the [1-¹³C]pyruvate experiments, three female Sprague Dawley rats were imaged with ¹H cine MRI to determine myocardial function pre- and post-saline infusion.ResultsWe demonstrated significant changes in cardiac contractile function between pre- and post-infusion of [1-¹³C]pyruvate. Specifically, there was an increase in end-diastolic volume (EDV), stroke volume (SV), and ejection fraction (EF). Additionally, the ventricular vascular coupling ratio (VVCR) showed an improvement after [1-¹³C]pyruvate infusion, indicating increased systolic performance due to an increased arterial load. There was a moderate to strong relationship between the downstream metabolic conversion of pyruvate to bicarbonate and a strong relationship between the conversion of pyruvate to lactate and the cardiac mechanical function response.ConclusionThe infusion of [1-¹³C]pyruvate resulted in demonstrable increases in contractile function which was related to pyruvate conversion to bicarbonate and lactate. The combined effects of the infusion volume and inotropic effects of pyruvate metabolism likely explains the augmentation in myocardial mechanical function seen in these experiments. Given the relationship between pyruvate metabolism and contractile function observed in this study, this methodological approach may be utilized to better understand cardiac metabolic and functional remodeling in heart disease.     

Excitonic nature of the dual fluorescence of 2,3-diazabicyclo[2.2.2]oct-2-ene and 1,4-dimethyl-(2,3-diazabicyclo[2.2.2]oct-2-ene)

Absorption, fluorescence excitation, and fluorescence spectra and the dependence of the degree of fluorescence polarization on the emission wavelength are measured for glass-like ethanol solutions of 2,3-diazabicyclo[2.2.2]oct-2-ene and 1,4-dimethyl-(2,3-diazabicyclo[2.2.2]oct-2-ene) at a temperature of 77 K. The analysis of the spectral polarization data shows that two excited electronic states S₁ and S₂ that contribute to the emission of the compounds are related to the exciton splitting and correspond to the symmetric (S₂) and antisymmetric (S₁) wave functions.     

Determination of Multiple φ-Torsion Angles in Proteins by Selective and Extensive C Labeling and Two-Dimensional Solid-State NMR

We describe an approach to efficiently determine the backbone conformation of solid proteins that utilizes selective and extensive ¹³C labeling in conjunction with two-dimensional magic-angle-spinning NMR. The selective ¹³C labeling approach aims to reduce line broadening and other multispin complications encountered in solid-state NMR of uniformly labeled proteins while still enhancing the sensitivity of NMR spectra. It is achieved by using specifically labeled glucose or glycerol as the sole carbon source in the protein expression medium. For amino acids synthesized in the linear part of the biosynthetic pathways, [1-¹³C]glucose preferentially labels the ends of the side chains, while [2-¹³C]glycerol labels the C^α of these residues. Amino acids produced from the citric-acid cycle are labeled in a more complex manner. Information on the secondary structure of such a labeled protein was obtained by measuring multiple backbone torsion angles φ simultaneously, using an isotropic–anisotropic 2D correlation technique, the HNCH experiment. Initial experiments for resonance assignment of a selectively ¹³C labeled protein were performed using ¹⁵N–¹³C 2D correlation spectroscopy. From the time dependence of the ¹⁵N–¹³C dipolar coherence transfer, both intraresidue and interresidue connectivities can be observed, thus yielding partial sequential assignment. We demonstrate the selective ¹³C labeling and these 2D NMR experiments on a 8.5-kDa model protein, ubiquitin. This isotope-edited NMR approach is expected to facilitate the structure determination of proteins in the solid state.     

Determination of the Stereochemistry of Substituted 5-Methylenehydantoins and Thiohydantoins by 13C NMR and Homonuclear NOE Experiments

Basically the aim of this work is to define the accurate configuration of the exocyclic double bond of substituted 5-methylenehydantoins and thiohydantoins which have been conceived as potential Aldose Reductase inhibitors. A previsional survey based upon the chemical shifts analysis from ¹H and decoupled ¹³C NMR spectra discloses, for a part of the family of compounds, the assignment of the Zconfiguration for unsubstituted (2,3) and N-3 substituted (6,7,9) derivatives, and the E-configuration for the N-1 substituted (8,11) ones. The qualitative study with Homonuclear NOE (8,11) and the coupling constant measuring ^{3 J}C4-C=C-H6 from coupled ¹³C NMR (1–11), lead to the assignment of the accurate configuration of the whole family's compounds in agreement with the previsional study.     

FTIR Spectral Study of Intramolecular Hydrogen Bonding in Thromboxane A2 Receptor Antagonist S-145 and Related Compounds. Part 4

Abstract

An N-methylated compound of S-145, (±)-(5Z)-7-[3-endo-[N-methyl)phenylsulphonyl)amino]bicyclo [2.2.1]hept-2-exo-yl]heptenoic acid 1, its chain analogue 12-[N-methyl(phenylsulphonyl)amino]dodecanoic acid 3, (±)-(5Z)-7-[3-endo-(benzoylamino)bicyclo[2.2.1]hept-2-exo-yl] heptenoic acid 5 and related compounds were synthesized in order to study the formation of a new class of intramolecular hydrogen bond IX (cis-CO₂H…O = Y). Their FTIR spectra were measured in dilute CCl₄ solution and subjected to curve analysis in order to separate overlapping absorption bands. For compounds 1,3 and 5, the intramolecular hydrogen bonds of the IX type involving 14-, 17- and 14-membered rings were found between a carboxyl group, which takes a cis-structure IV, and an oxygen atom of a sulphonyl or benzoylamino group, respectively. The C[dbnd]O stretching vibration bands of these carboxyl groups shifted to lower wavenumbers (ca. 19 cm^?1). The direction of these shifts was contrary to that found for α-keto and α-alkoxycarboxylic acids in which carboxyl groups take a trans-structure III due to the formation of intramolecular hydrogen bonds I and II, respectively.     

Adducts of rhodium(II) tetraacetate with some nitrogenous organic ligands: application of natural abundance 15N and 13C CPMAS NMR spectroscopy

Adducts of rhodium(II) tetraacetate with some nitrogenous organic ligands: 1-azabicyclo[2,2,2]octane 1, 1,2-diazabicyclo[2,2,2]octane 2, pyrazine 3, pyrimidine 4, [1,3,5]triazine 5 and 1,3,5,7-tetraazatricyclo[3,3,1,1(3,7)]decane 6 have been investigated by means of natural abundance (13)C and (15)N CPMAS nuclear magnetic resonance (NMR) spectroscopy. 1-Azabicyclo[2,2,2]octane 1 having one nitrogen atom in the molecule produces either the 1:1 or 1:2-adduct depending on the reagent molar ratio; some features of its (13)C CPMAS NMR spectra suggest the dimeric structure of the 1:1-adduct. Multifunctional ligands having more than one nitrogen atom in a molecule yield the adducts insoluble in common organic solvents. Elemental analysis and NMR experiments have revealed that 1,2-diazabicyclo[2,2,2]octane, pyrazine, pyrimidine and [1,3,5]triazine produced adducts in the form of 1:1 polymeric chains. 1,3,5,7-tetraazatricyclo[3,3,1,1(3,7)]decane yields the adduct containing ligand and metal salt in the molar ratio of 3:4. The (15)N chemical shift change caused by the Rh-N bond formation (Deltadelta parameter) varies from ca. -9 ppm for aliphatic ligands to ca. -40 ppm for heteroaromatic species. The NMR findings have been supported by theoretical calculation (density functional calculation (DFT), LanLD2Z//B3LYB level) of molecular geometry, energy and chemical shieldings.     

Synthesis,Properties and Spectroscopic Studies of Cobalt (II) and Cobalt (III) Complexes with Planar Dithioxamides

The complexes [Coⁱⁱⁱ(LH₂)₃]X₃ (LH₂ = dithiooxamide, N-methyldithiooxamide, N,N′-dimethyldithiooxamide; X = Cl, Br, l) and [CoⁱⁱL]n have been prepared. They were characterized by analyses, thermal techniques, magnetic susceptibilities and spectroscopic (ligand-field, ¹³C-NMR, FT-IR) methods. The vibrational analysis of the prepared complexes is given using NH/ND and CH₃/CD₃ isotopic substitutions. The neutral dithiooxamides exhibit a bidentate chelating S,S-coordination, while the doubly deprotonated dithiooxamido anions act as bis-bidentate bridging S,N/N,S-ligands giving trans polymeric structures. The Co(III) complexes are octahedral with Co^IIIS₆ coordination spheres. A square planar geometry around Co(II) is assigned for the polymeric compounds.