IR Study on Aqueous Solution Behavior of D-Cycloserine

IR spectra were measured for an antitubercular agent, D-cycloserine (CS), and the hydrolyzate, β-aminooxy-D-alanine (AOA) and the dimer, cis-3, 6-bis(aminooxymethyl)-2, 5-piperadinedione (CS-dimer) at various pHs in aqueous solutions. Molecular species existing in the ionic equilibria were characterized by the pH dependence of the spectra. Band assignments were carried out by reference to the spectra of D₂0 solutions and those of related compounds. Spontaneous transformation of CS to CS-dimer was observed by the IR spectra for the neutral aqueous solution. The spectral evidence suggested that the non-ionic form of CS plays a key role in the dimerization process.     

BaxOy小团簇修饰Ru(0001)表面的结构稳定性和氮分子吸附性质

为了说明钡助剂的存在形式, 本文采用第一性原理方法研究了Ba_xO_y小团簇修饰Ru(0001)表面的结构稳定性和氮分子吸附性质. 基于总能的热力学分析发现, 在实验条件下(500 K, P_H2O/P_H2<10^-3), Ba₂O团簇比BaO₂, BaO, Ba和O等团簇(原子)更加稳定. 这证实含有金属性钡原子的团簇也是氧化钡助剂可能的工作状态. 表面电荷差分密度说明Ba₂O团簇的氧和钡原子与衬底的作用不同. 不过Ba₂O团簇氧和钡原子附近的氮分子吸附行为相似, Ba₂O团簇增强了氮分子和衬底的相互作用. Ba₂O团簇氧和钡原子附近的氮分子吸附能分别为0.78 和0.88 eV, 均大于清洁表面的0.67 eV. 氮分子间距和氮分子的拉伸振动频率都表明Ba₂O团簇在一定程度上活化了吸附氮分子. Ba₂O团簇氧和钡原子附近的N–N键长分别为0.117和0.116 nm, 大于清洁表面的0.114 nm. 氧和钡原子附近氮分子的拉伸振动频率分别为 1888 和1985 cm^-1, 小于清洁表面的2193 cm^-1. 电荷差分密度的计算结果说明, 削弱作用主要来自于Ba₂O团簇中钡离子和氮分子间的静电作用. 两者间的静电作用增加了氮分子π 反键轨道的占据数, 促进了氮分子极化, 从而削弱氮分子键.     

A computational NMR study of nitrogen substitutional impurity in the armchair BeO nanotube

The properties of nitrogen doped model of (5, 5) armchair beryllium monoxide nanotubes (BeONTs) have been investigated by density functional theory (DFT) and chemical shift parameters were calculated. A BeONT consisting of 60 Be, 60 atoms of O, and having a length of 1.67 nm was considered and each end of the nanotube was capped by 10 hydrogen atoms. The calculated results indicate that by replacing an O atom by N atom (N_O-doping), the chemical shift (CS) parameters of ⁹Be and ¹⁷O atoms are un-affected but replacing a Be atom with N (N_Be-doping) affects the CS parameters of O atoms. These results imply that role of nitrogen as an electron acceptor is more significant in the structure for which it dopes a Be atom.     

Infrared ion dip and ultraviolet spectroscopy of 4-phenyl imidazole, its tautomer, 5-phenyl imidazole, and its multiply hydrated clusters

Mass-resolved resonant two photon ionisation (R2PI) and infrared ion dip spectra have been recorded for 4-phenylimidazole (4PI) and its singly and multiply hydrated clusters 4PI(H₂O)_{n = 0 - 4}, under supersonic expansion conditions. In the case of 4PI(H₂O)_0,1, it has also been possible to record infrared spectra in both the ground (S₀) and excited (S₁) states. Combining the experimental data with the results of ab initio calculations has led to the structural assignment of each cluster. In each case, the water molecules bind primarily to the NH site of the imidazole ring. Clusters with n≥ 2 incorporate linear water chains, in which the proton donating terminus bridges either to the π-electron system (n = 2) or to the >N: atom site (n = 3, 4) on the imidazole ring. Despite the creation of a “water wire”, connecting the donor and acceptor sites of imidazole, there is no evidence of proton transfer in either the ground or excited state. Received 20 December 2001 Published online 13 September 2002     

(HMgN3)n(n=1–5)团簇结构与性质的密度泛函理论研究

利用密度泛函理论在B3LYP/6-311G^*水平上对叠氮化合物(HMgN₃)_n(n=1–5)团簇各种可能构型进行了几何优化,预测了各团簇的最稳定结构. 并对最稳定结构的成键特性、电荷分布、振动特性及稳定性进行理论研究. 结果表明:HMgN₃团簇最稳定结构为直线型;(HMgN₃)_n(n=2,5)团簇最稳定结构为叠氮基中N原子和金属原子相连构成Mg–N–Mg结构;(HMgN₃)_n(n=3,4)团簇最稳定结构为叠氮基与Mg原子相互链接形成的环状结构. 团簇最稳定结构中金属Mg原子均显示正电性,H原子均显示负电性,叠氮基中间的N原子显示正电性、两端的N原子显示负电性,且与Mg原子直接作用的N原子负电性更强. Mg–N键和Mg–H键为典型的离子键,叠氮基内N原子之间是共价键. 团簇最稳定结构的红外光谱分为三部分,其最强振动峰均位于2258–2347 cm^-1,振动模式为叠氮基中N–N键的反对称伸缩振动. 叠氮基在团簇和晶体中结构不变,始终以直线型存在. 稳定性分析显示,(HMgN₃)₃团簇相对于其他团簇更为稳定. 关键词： 3)_n(n=1–5)团簇')" href="#">(HMgN₃)_n(n=1–5)团簇 叠氮基 密度泛函理论 结构与性质     

Basicity of trifluoromethylsulfonylformamidines. DFT and FTIR study and NBO analysis

The effect of the electron–acceptor substituent CF₃SO₂ at the imine nitrogen atom on the basicity and the electron distribution in N,N‐alkylformamidines ( 1 , 2 , 3 , 4 , 5 ) was studied experimentally by the FTIR spectroscopy and theoretically at the DFT (B3LYP/6‐311+G(d,p)) level of theory, including the natural bond orbital (NBO) analysis. The calculated proton affinities of the imine nitrogen atom and the sulfonyl oxygen (PA_N′ and PA_O) depend on the atomic charges, the C?N′ and N′―S bond polarity and on the energy of interaction of the amine nitrogen and the oxygen lone pairs with antibonding π* and σ*‐orbitals. The basicity of the imine nitrogen atom is increased with the increase of the electron‐donating power of the substituent at the amine nitrogen atom due to stronger interaction n_N → π*_C?N′, but is decreased for the electron‐withdrawing groups MeSO₂ and CF₃SO₂ at the imine nitrogen atom in spite of the increase of this conjugation. Protonation of ( 1 , 2 , 3 , 4 , 5 ) in CH₂Cl₂ solution in the presence of CF₃SO₃H occurs at the imine nitrogen atom, while the formation of hydrogen bonds with 4‐fluorophenol takes place at the sulfonyl oxygen atom, whose basicity is lower than that of N,N′‐dimethylmethanesulfonamide but higher than of N,N′‐dimethyltrifluoromethanesulfonamide. Copyright © 2015 John Wiley & Sons, Ltd.     

(OsnN)0,±(n=1-6)团簇电子结构与光谱性质的理论研究

采用密度泛函理论中的杂化密度泛函B3LYP方法在赝势基组LANL2DZ水平上对Os_nN^0,±(n=1-6)团簇的各种可能构型进行了几何结构优化,得出了它们的基态构型,并对基态结构的磁学性质、自然键轨道(NBO)、光谱和芳香性进行了理论研究. 研究结果表明:OsN^-和Os₅N^-团簇发生了"磁矩猝灭"的现象,在Os₂N和Os₄N< 关键词： nN^0,±(n=1-6)团簇')" href="#">Os_nN^0,±(n=1-6)团簇 电子结构 光谱性质 密度泛函理论     

Surface‐enhanced Raman scattering of benzenesulfonamide and sulfanilamide adsorbed on silver nanoparticles

The Surface‐enhanced Raman scattering of benzenesulfonamide and sulfanilamide adsorbed on silver sols was studied. On the basis of the noticeable shifts observed for wavenumbers of the ν_s(OSO), ν(CS), and ν(SN) vibrations with respect to the Raman spectra of the solids and the ionic solutions, we conclude that these molecules are adsorbed on silver nanoclusters at pH ≥ 7 with the aminosulfonyl groups partially deprotonated. The benzenesulfonamide links to the metal through the nitrogen atom of the corresponding azanion, while the sulfanilamide interacts in turn through the nitrogen atoms of the –NH₂ and –SO₂NH^– groups in the para‐position. Additionally, it was found that the most enhanced surface‐enhanced Raman scattering bands, especially the 8a;ν_ring mode, are related to the presence of the charge transfer mechanism. Copyright © 2011 John Wiley & Sons, Ltd.     

Viscoelasticity and morphology of an organic hybrid of chlorinated polyethylene and N,N′-dicyclohexyl-2-benzothiazolyl sulfenamide

The viscoelasticity and morphology of an organic hybrid of chlorinated polyethylene (CPE) and N,N′-dicyclohexyl-2-benzothiazolyl sulfenamide (DBS) were studied by means of tensile and shear complex modulus and differential scanning calorimetry (DSC) analysis. Tensile and shear loss modulus (E″ and G″), which are shown as indexes of vibration damping performance, showed one peak corresponding to the glass transition. The peak maximum values (E″_max and G″_max)increased in proportion to DBS content ( _DBS) and the slope of E″_max against _DBS became steep above a certain DBS content, i.e. the critical DBS content ( _c). A high damping material was obtained by the addition of DBS, especially when DBS content was higher than _c. These increases in loss moduli below and above _c are caused by the interaction between CPE and DBS molecules and the friction between DBS molecules, respectively. It was found that CPE/DBS is a compatible blend at all DBS contents from the analysis of the glass transition temperature with DSC. Furthermore, the influence of chlorine content in CPE on those characteristics was investigated. Higher chlorine content led to lower _c, a decrease in E″ below _c and an increase in E″ above _c. These results are due to the increase in the number of dichloromethylene units (CCl₂), which reduces the α-hydrogen atom in CPE.     

氮掺杂及水分子吸附碳纳米管电子场发射第一性原理研究

对闭口碳纳米管(CNT)顶端分层掺氮及吸附不同数目水分子体系,运用第一性原理研究了有电场存在时的电子场发射性能.结果表明：掺氮并吸附水分子的CNT结构稳定;外电场愈强、水分子数愈多,体系态密度(DOS)向低能端移动幅度愈大且最高分子占据轨道(HOMO)/最低分子空轨道(LUMO)能隙愈小.吸附能,DOS/LDOS,HOMO/LUMO及其能隙分析一致表明,第三层氮掺杂CNT吸附不同数目水分子体系的场发射性能最佳. 关键词： 氮掺杂 水吸附 密度泛函理论 电子场发射     

Theoretical study on the reactions of CH3NHNH2 with ground state O(3P) atom and excited state O(1D) atom

The reaction mechanisms of methylhydrazine (CH₃NHNH₂) with O(³P) and O(¹D) atoms have been explored theoretically at the MPW1K/6-311+G(d,p), MP2/6-311+G(d,p), MCG3-MPWPW91 (single-point), and CCSD(T)/cc-pVTZ (single-point) levels. The triplet potential energy surface for the reaction of CH₃NHNH₂ with O(³P) includes seven stable isomers and eight transition states. When the O(³P) atom approaches CH₃NHNH₂, the heavy atoms, namely N and C atoms, are the favourable combining points. O(³P) atom attacking the middle-N atom in CH₃NHNH₂ results in the formation of an energy-rich isomer (CH₃NHONH₂) followed by migration of O(³P) atom from middle-N atom to middle-H atom leading to the product P6 (CH₃NNH₂+OH), which is one of the most favourable routes. The estimated major product CH₃NNH₂ is consistent with the experimental measurements. Reaction of O(¹D) + CH₃NHNH₂ presents different features as compared with O(³P) + CH₃NHNH₂. O(¹D) atom will first insert into C–H2, N1–H4, and N2–H5 bonds barrierlessly to form the three adducts, respectively. There are two most favourable paths for O(¹D) + CH₃NHNH₂. One is that the C–N bond cleavage accompanied by a concerted H shift from O atom to N atom (mid-N) leads to the product P_I (CH₂O + NH₂NH₂), and the other is that the N–N bond rupture along with a concerted H shift from O to N (end-N) forms P_IV (CH₃NH₂ + HNO). The similarities and discrepancies between two reactions are discussed.     

Intracluster electron transfer from a metal atom/cluster followed by anionic oligomerization of vinyl molecules

Intracluster electron transfer and oligomerization reaction were investigated by mass spectrometry of clusters of alkali metal atom (M) with acrylonitrile (AN; CH₂=CHCN). In the photoionization mass spectra of M(AN)_n, magic numbers were clearly observed at n = 3k (k = 1-4 for M = Na and K, k = 1 for M = Li). The results of photodissociation of neutral K(AN)_n indicate that the n = 3 cluster has an anomalous stability relative to other sizes of clusters. The C=C bond in vinyl molecules is also found to be necessary to form the magic numbers by measuring the photoionization mass spectrum of K atom with propionitrile. These results strongly support the intracluster anionic oligomerization reaction initiated by electron transfer from the alkali atom. The quantum chemical calculations have revealed that the evaporation induced by excess energy generated by intracluster oligomerization is important to form the magic numbers in the present clusters. Received 29 November 2000     

The Structure of Water Clusters Interacting with Gaseous Acetylene

The interaction of water clusters with acetylene molecules at T = 230 K was studied by the molecular dynamics method. The structure of clusters was analyzed by constructing Voronoi polyhedra. Water clusters interacting with C₂H₂ molecules are characterized by a diversity of H-bond orientations, a more uniform distribution of H-bonds over the cluster volume, a larger number of bonds per atom, and smaller bond lengths. The spectrum of bond lengths broadens as the number of acetylene molecules interacting with the water cluster increases. C₂H₂ molecules have a pressing action on water clusters.     

Determination of N and O – Atom and N2(A) Metastable Molecule Densities in the Afterglows of N2 and N2‐O2 Microwave Discharges

Early afterglows of N₂ and N₂‐O₂ flowing microwave discharges are characterized by optical emission spectroscopy. The N and O atom and N₂(A) metastable molecule densities are determined by optical emission spectroscopy after calibration by NO titration for N‐atoms and measurements of NO and N₂ band intensities for O‐atoms and N₂(A) metastable molecules. By using N₂ tanks with 50 and 10 ppm impurity, it is determined in the afterglow an O‐ atom impurity of 150‐200 ppm. Variations of the N and O‐atom and N₂(A) metastable molecule densities are obtained in the early afterglow of N₂–(9·10^–5–3·10^–3)O₂ gas mixtures. (© 2013 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

［Mg(NH2)2］n(n=1—5)团簇的密度泛函理论研究

用密度泛函理论的杂化密度泛函B3LYP方法在6-31G^*基组水平上对［Mg(NH₂)₂］_n(n=1—5)团簇各种可能的构型进行几何结构优化,预测了各团簇的最稳定结构.对最稳定结构的振动特性、成键特性、电荷特性等进行了理论研究.结果表明：团簇易形成链状结构,Mg—N键长为0.190—0.234 nm,N—H键长为0.101—0.103 nm,H—N—H键角为100.2°—107.5°;团簇中M 关键词： 2)₂］_n(n=1—5)团簇')" href="#">［Mg(NH₂)₂］_n(n=1—5)团簇 密度泛函理论 结构与性质 储氢材料     

Adsorption of CO, CO2 and NO molecules on a BaTiO3 (0 0 1) surface

Since the development of Scanning Tunnelling Microscopy (STM) technique, considerable attention has been devoted to various molecules adsorbed on various surfaces. Also, a new concept emerged with molecules on surfaces considered as nano machines by themselves. In this context, a thorough knowledge of surfaces and adsorbed molecules at an atomic scale are thus particularly invaluable. The present work describes the first Density Functional Theory (DFT) study of adsorption of CO, CO₂ and NO molecules on a BaTiO₃ surface following a first preliminary calculation of O and O₂ adsorption on the same surface. In the previously considered work, we found that a (0 0 1) surface with BaO termination is more stable than the one with TiO₂-termination. Consequently, we extended our study to CO, CO₂ and NO molecules adsorbed on a (0 0 1) surface with BaO termination. The present calculation was performed on a (1 × 1) cell with one monolayer of adsorbed molecules. Especially, a series of cases implying CO molecules adsorbed in various geometrical configurations has been examined. The corresponding adsorption energy varies in the range of −0.17 to −0.10 eV. The adsorption energy of a CO₂ molecule directly located above an O surface atom (called O_s) is of the order of −0.18 eV. The O-C distance length is then 1.24 Å and the O-C-O and O-C-O_s angles are 134.0° and 113.0°, respectively. For NO adsorption, the most important induced structural changes are the followings: (i) the N-O bond is broken when a NO molecule is absorbed on a Ba-O_s bridge site. In that case, N and O atoms are located above an O and a Ba surface atom, respectively, whereas the O-Ba-O_s and N-O_s-Ba angles are 106.5° and 63.0°, respectively. The N-O distance is as large as 2.58 Å and the adsorption energy is as much as −2.28 eV. (ii) In the second stable position, the NO molecule has its N atom adsorbed above an O_s atom, the N-O axis being tilted toward the Ba atom. The N-O_s-Ba angle is then 41.1° while the adsorption energy is only −0.10 eV. At last, the local densities of states around C, O as well as N atoms of the considered adsorbed molecules have also been discussed.     

Ab initio molecular dynamics investigations of structural, electronic and dynamical properties of water in supercritical carbon dioxide

Ab initio molecular dynamics simulations of a solitary perdeuterated water molecule solvated in supercritical carbon dioxide have been performed along an isotherm at three different densities. Electron donor-acceptor interactions between the oxygen atom of water and the carbon atom of CO₂ as well as hydrogen bonded interactions between the two molecules have been shown to play a dominant role in the solvation. The mean dipole moment of the water molecule increases with the density of the solution, from a value of 1.85 D at low density to around 2.15 D at the highest density. The increase in the solvent density causes the water molecule to exhibit a range of behavior, from a free molecule to one that interacts strongly with CO₂. A blue shift in the bending mode of water has been observed with increasing solvent density. The carbon dioxide molecules which are present in the first neighbor shell of water are found to exhibit larger propensity to deviate from a linear geometry in their instantaneous configurations.      

Effect of water–methanol content on the structure of Nafion in the sandwich model and solvent dynamics in nano-channels; a molecular dynamics study

Continuing an ongoing study, molecular dynamics (MD) simulations were performed to investigate the effects of methanol concentration on Nafion morphology, such as the size of solvent cluster, solvent location, and polymer structure via the sandwich model. Our survey shows that high methanol concentrations resulted in increment of solvent cluster size in Nafion membrane. The sulfonic acid clusters also befall much in order as subsequent layers of such ionic clusters are formed. The number of neighbouring hydronium ions around a sulfur atom is independent of methanol concentration, but the first shell of hydronium and water around sulfonic acid clusters is broader. Although methanol would prefer to interact with water molecules rather than sulfonic acid groups, gathering of methanol molecules via hydrophobic self-aggregation is preferred. Methanol is located closer to the hydrophobic part of the polymer than water, while water is located closer to the hydrophilic part of the polymer. It was found that methanol distributes specifically more than water in nano-channels. Investigation of solvent dynamics in nano-channels shows that diffusion coefficients (D) of water, methanol, and hydronium decrease with increasing methanol concentration and they may be ordered as follows: D _Water?>?D _Methanol?>?D _Hydronium (D _Water?≈?1.6–2.0D _Methanol and D _Methanol?≈?2.1–3.0D _Hydronium).     

Quantum-Chemical Investigation of the Intermolecular Interaction Effect on the Spectral-Luminescent and Physical-Chemical Properties of Certain 8-Azasteroid Class Molecules

The effect of hydrogen bonds on the spectral-luminescent and proton-acceptor properties of 8-azagone-12,17-dione and its 2,3-dimethoxy substituent is examined. The method of molecular electrostatic potential is used for choosing a spatial model for complexes with the 1:2 mixture ratio. Hydrogen bonding of oxygen atoms of C and D cycles of both molecules with water molecules is shown to affect but slightly the spectral-luminescent properties. The effect of hydrogen bonds on the proton-acceptor properties of molecules both in the ground and fluorescent states is most pronounced: the proton-acceptor properties of oxygen atoms of the C, D, and methoxy groups decrease, particularly in the fluorescent state, while the same properties of the nitrogen atom increase. We can assume on the basis of these facts that the role of the nitrogen atom in the intermolecular interaction is increased when it is in the S ₁ state.     

Mössbauer spectroscopic studies and structural characterization of oxo-centered trinuclear iron carboxylato-aquo complexes

Mixed-valence states of [Fe₃O(CH₂ClCO₂)₆(H₂O)₃]nH₂O (n=0 and 3) were studied by means of Mössbauer spectroscopy and single-crystal X-ray crystallography. The number of water molecules of crystallization was determined by X-ray crystallography. The dehydrated complex was obtained by storing the trihydrated complex under a dry atmosphere. It was found that the temperature dependence of the mixed-valence state is affected by the hydrated water molecules.