Chain conformation in two-dimensional dense state

In an effort to provide evidence concerning the conformation of many chains in strict two-dimensional (2D) dense state, we synthesized polymer chains of diameter of nanometers through an anionic polymerization process. The conformational characteristics of the long chain molecules in films of thickness h corresponding to the chain diameter a were directly obtained from atomic force microscopy observations. In 2D dispersed state, the conformations of the long chain molecules were typical Gaussian. However, in 2D dense state the long chain molecules were strongly interpenetrated. Their conformations were largely perturbed by the presence of neighbor chains and were not Gaussian. This result was in contradiction with the segregated globule model predicted by de Gennes. The central reason is that 2D space cannot be filled to normal density with 2D Gaussian globules; either the area must be greatly increased with consequently large voids, or the globule conformation must be expanded by allowing chains to interpenetrate each other.     

Real-Time Imaging of the Coil-Globule Transition of Single Adsorbed Poly(2-vinylpyridine) Molecules

Summary: We applied scanning force microscopy to study, in real time, the mobility and reorganisation of single poly(2-vinylpyridine) molecules that were adsorbed on mica and exposed to vapours of ethanol or water. The macromolecules adopted a compact globular conformation in ethanol-saturated vapour and extended to a surface-bound two-dimensional coil in water-saturated vapour. Hence, reversible coil-to-globule conformational transitions of flexible polymer chains were directly visualized with unique molecular resolution.

Left: individual P2VP molecules on mica compacted by exposure to ethanol vapour, right: the same macromolecules extended in water vapour.     

Tuning intermolecular attraction to create polar order and one-dimensional nanostructures on surfaces

This study utilizes atomic force microscopy and electrostatic force microscopy to investigate the orientation of overcrowded aromatics in films with submonolayer coverage. The results demonstrate that the side chains in the molecules can be used as a tool to control the molecular order and orientation in thin films. For molecules that do not self-associate well, the interaction with the substrate dominates, and the molecules orient with their aromatic planes parallel to the surface. These monolayers have measurable polar order. For molecules that self-associate well, the opposite orientation is observed. These films are comprised of isolated stacks of molecules parallel to the surface.     

Surface supramolecular organization of a terbium(III) double-decker complex on graphite and its single molecule magnet behavior

The two-dimensional self-assembly of a terbium(III) double-decker phthalocyanine on highly oriented pyrolitic graphite (HOPG) was studied by atomic force microscopy (AFM), and it was shown that it forms highly regular rectangular two-dimensional nanocrystals on the surface, that are aligned with the graphite symmetry axes, in which the molecules are organized in a rectangular lattice as shown by scanning tunneling microscopy. Molecular dynamics simulations were run in order to model the behavior of a collection of the double-decker complexes on HOPG. The results were in excellent agreement with the experiment, showing that-after diffusion on the graphite surface-the molecules self-assemble into nanoscopic islands which align preferentially along the three main graphite axes. These low dimension assemblies of independent magnetic centers are only one molecule thick (as shown by AFM) and are therefore very interesting nanoscopic magnetic objects, in which all of the molecules are in interaction with the graphite substrate and might therefore be affected by it. The magnetic properties of these self-assembled bar-shaped islands on HOPG were studied by X-ray magnetic circular dichroism, confirming that the compounds maintain their properties as single-molecule magnets when they are in close interaction with the graphite surface.     

Molecular clusters in two-dimensional surface-confined nanoporous molecular networks: structure, rigidity, and dynamics

The self-assembly of a series of hexadehydrotribenzo[12]annulene (DBA) derivatives has been investigated by scanning tunneling microscopy (STM) at the liquid/solid interface in the absence and presence of nanographene guests. In the absence of appropriate guest molecules, DBA derivatives with short alkoxy chains form two-dimensional (2D) porous honeycomb type patterns, whereas those with long alkoxy chains form predominantly dense-packed linear type patterns. Added nanographene molecules adsorb in the pores of the existing 2D porous honeycomb type patterns or, more interestingly, they even convert the guest-free dense-packed linear-type patterns into guest-containing 2D porous honeycomb type patterns. For the DBA derivative with the longest alkoxy chains (OC20H41), the pore size, which depends on the length of the alkoxy chains, reaches 5.4 nm. Up to a maximum of six nanographene molecules can be hosted in the same cavity for the DBA derivative with the OC20H41 chains. The host matrix changes its structure in order to accommodate the adsorption of the guest clusters. This flexibility arises from the weak intermolecular interactions between interdigitating alkoxy chains holding the honeycomb structure together. Diverse dynamic processes have been observed at the level of the host matrix and the coadsorbed guest molecules.     

The formation of fibers via complementary base pairing of DNA-conjugated bovine serum albumin

For the first time the conjugate of single stranded DNA and Bovine Serum Albumin, which could self-assemble into fibers via complementary base pairing of the DNA.     

Combination of an aromatic core and aromatic side chains which constitutes discotic liquid crystal and organogel supramolecular assemblies

This paper reports unique and unusual formations of columnar liquid crystals and organogels by self-assembling discotic molecules, which are composed of an aromatic hexaazatriphenylene (HAT) core and six flexible aromatic side chains. In HAT derivatives 3a, with 4'-(N,N-diphenylamino)biphenyl-4-yl chains, 3b, with 4'-[N-(2-naphthyl)-N-phenylamino]biphenyl-4-yl chains, and 3c, with 4'-phenoxybiphenyl-4-yl chains, the two-dimensional hexagonal packings can be created by their self-assembling in the liquid crystalline phase, which were characterized by polarizing optical microscopy, differential scanning calorimetry, and X-ray diffraction analysis. In certain solvents, HAT molecules 3a-c can form the viscoelastic fluid organogels, in which one-dimensional aggregates composed of the HAT molecules are self-assembled and entangled into three-dimensional network structures. The organogel structures were analyzed by scanning electron microscopy observation, (1)H NMR, UV-vis, and circular dichroism spectroscopy. In contrast to 3a-c, none of the liquid crystalline and organogel phases could be formed from 3d and 3e with short aromatic side chains including a phenylene spacer, and 3f (except a few specific solutions) and 3g without terminal diarylamino and phenoxy groups. In 3a-c, the aromatic side chains with terminal flexible groups make up soft regions that cooperatively stabilize the liquid crystalline and organogel supramolecular structures together with the hard regions of the hexaazatriphenylene core.     

Atomic force microscopy: Bombyx mori silk fibroin molecules and their higher order structure

We performed atomic force microscopy measurements on fibroin molecules from the domestic silkworm, Bombyx mori. At low concentrations, we could observe single protein molecules. The shape of the observed molecules is a rod with long smaller chains extending from the ends. The size of the rod is 60 nm in length and 15 nm in width. At high concentrations, we observed long threadlike aggregates of fibroin molecules, their chains entangled with one another. These results provide insight into the microscopic mechanism of silk‐fiber formation. © 2000 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 38: 1436–1439, 2000     

Transition from Homochiral Clusters to Racemate Monolayers during 2D Crystallization of Trioxa[11]helicene on Ag(100)

The phenomenon of chiral crystallization into homochiral crystals is known for more than 170 years, yet it is still poorly understood. Studying crystallization on surfaces under well-defined condition seems a promising approach towards better understanding the intermolecular chiral recognition mechanisms during nucleation and growth. The two-dimensional aggregation of racemic trioxaundecahelicene on the single crystalline silver(100) surface has been investigated with scanning tunneling microscopy and with non-contact atomic force microscopy, as well as molecular modeling simulations. A transition from homochiral cluster motifs to heterochiral assembly into large islands with increasing coverage is observed. Force field modelling confirms higher stability of heterochiral arrangements from twelve molecules on. Results are discussed with respect to previous findings for the all-carbon heptahelicene on the same surface.     

Immobilization of paracetamol and benzocaine pro-drug derivatives as long-range self-organized monolayers on graphite

We show here by means of scanning tunneling microscopy (STM) at the liquid/solid interface that paracetamol and benzocaine molecules bearing a long aliphatic chain can be immobilized on highly oriented pyrolitic graphite (HOPG) as perfectly ordered two-dimensional domains extending over several hundreds of nanometers. In both cases, high-resolution STM images reveal that compounds 1 and 2 self-assemble into parallel lamellae having a head-to-head arrangement. The paracetamol heads of 1 are in a zigzag position with entangled n-dodecyloxy side chains while benzocaine heads of compound 2 are perfectly aligned as a double row and have their palmitic side chains on either sides of the head alignment. We attribute the very long-range ordering of these two pro-drug derivatives on HOPG to the combined effects of intermolecular H-bonding on one side and Van der Waals interactions between aliphatic side chains and graphite on the other side. The 2D immobilization of pro-drug derivatives via a non-destructive physisorption mechanism could prove to be useful for applications such as drug delivery if it can be realized on a biocompatible substrate.     

Two-dimensional LNA/DNA arrays: estimating the helicity of LNA/DNA hybrid duplex

We measured the helical repeats of a non-natural nucleic acid, locked nucleic acid (LNA), by incorporating LNA strands into the outer arms of a DNA double crossover (DX) molecule; atomic force microscopy (AFM) imaging of the two-dimensional (2D) arrays self-assembled from these DX molecules allows us to derive the helical repeat of the LNA/DNA hetero-duplex to be 13.2 +/- 0.9 base pairs per turn.     

Two-dimensional crystal growth and stacking of bis(phthalocyaninato) rare earth sandwich complexes at the 1-phenyloctane/graphite interface

Initial stages of two-dimensional crystal growth of the double-decker sandwich complex Lu(Pc*)2 [Pc* = 2,3,9,10,16,17,23,24-octakis(octyloxy)phthalocyaninato] have been studied by scanning tunneling microscopy at the liquid/solid interface between 1-phenyloctane and highly oriented pyrolytic graphite. High-resolution images strongly suggest alignment of the double-decker molecules into monolayers with the phthalocyanine rings parallel to the surface. Domains were observed with either hexagonal or quadrate packing motifs, and the growing interface of the layer was imaged. Molecular resolution was achieved, and the face of the phthalocyanine rings appeared as somewhat diffuse circular features. The alkyl chains are proposed to be interdigitating to maintain planar side-by-side packing.     

Synthesis and ordering of two-dimensional polymers

The work to be discussed in this lecture departs from the usual focus of polymer science on linear chains and explores the “bulk” synthesis and properties of polymer molecules that can be considered shape-persistent molecular objects. Shapes that are particularly interesting are those not common in the conformational space of linear chains, for example, two-dimensional polymers shaped as plates or discs and macromolecules shaped as cylinders or parallelepipeds. The lecture focuses on a molecular object which is a rigid and internally anisotropic two-dimensional polymer with planar dimensions greater than its thickness. The shape-granting skeleton of this two-dimensional polymer is built by covalent bonds. We have so far developed three different strategies for their bulk synthesis, all involving systems in which reactive oligomers organize spontaneously into the necessary planar assemblies to form the object. In one strategy molecular recognition events such as homochiral interactions play a key role in the formation of the two-dimensional flat polymers /1/. A different methodology relies on nanophase separation in rodcoil block molecules in which a rigid segment is covalently bonded to a flexible one sharing the same backbone. The third strategy involves the folding of oligomers into hairpin structures which self assemble into two-dimensional liquids. In these two last strategies the layered rodcoils or hairpins react to form the covalent backbones necessary to grant shape to the object. A computer simulation relevant to the experimental system suggests that large two-dimensional polymers can be formed by extremely short backbones. The lecture will also describe examples of unique properties in advanced materials that could emerge from these rigid two-dimensional objects. These examples include. materials with self-organized surfaces of high chemical definition and temporal stability, self assembling membranes, molecular reinforcement, and films with remarkably stable electrical or optical properties.     

The influence of chain length and ripening time on the self-assembly of alkylamines on mica

The influence of chain length and ripening time on the self-assembly of tetradecyl (C(14)), hexadecyl (C(16)), and octadecylamine (C(16)) on mica has been studied by atomic force microscopy. The overall process can be described in three stages characterized by different time scales. First, alkylamine molecules adsorb in a process controlled by water mediated interactions of the NH(2) head groups and mica. Second, surface diffusion and aggregation into islands takes place, driven by energy interactions between alkyl chains. The third stage consists of a progressive tilt of the self-assembled molecules towards the surface, driven by relaxation of the electrostatic repulsion between protonated amino groups due to water uptake from atmosphere.     

Pressure- and temperature-induced association of arborescent polystyrene-graft-poly(ethylene oxide) copolymers at the air-water interface

The influence of surface pressure and subphase temperature on the association of arborescent polystyrene- graft-poly(ethylene oxide) (PS- g-PEO) copolymers at the air-water interface was investigated using the Langmuir balance and atomic force microscopy (AFM) techniques. These dendritic molecules form stable condensed monolayers with surface compressional moduli >250 mN/m. The variation in film thickness observed as a function of surface pressure suggests that at low surface pressures (gaslike phase) the PEO chains remain adsorbed at the air-water interface. At higher surface pressures (condensed phase), the PEO chains partially desorb into the subphase and adopt a more brushlike conformation. Large islandlike clusters with a broad size distribution were observed for samples with PEO contents of up to 15% by weight. In contrast, copolymers with PEO contents of 22-43% displayed enhanced side-by-side association into ribbonlike superstructures upon compression. The same effect was observed even in the absence of compression when the subphase temperature was increased from 12 to 27 degrees C. The temperature-induced association was attributed to increased van der Waals attractive forces between the PS cores relative to the steric repulsive forces between PEO chains in the coronas because the solvent quality for the PEO segments decreased at higher temperatures. The restricted number of superstructures observed for arborescent copolymers as compared with linear- and star-branched PS-PEO block copolymers is attributed to the enhanced structural rigidity of the molecules due to branching.     

Self-assembly of amphiphilic hexapyridinium cations at the air/water interface and on HOPG surfaces.

Mono- and multilayers of a novel amphiphilic hexapyridinium cation with six eicosyl chains (3) are spread at the air/water interface as well as on highly ordered pyrolytic graphite (HOPG). On water, the monolayer of 3 is investigated by recording surface pressure/area and surface potential/area isotherms, and by Brewster angle microscopy (BAM). Self-organized tubular micelles with an internal edge-on orientation of molecules form at the air/water interface at low surface pressure whereas multilayers are present at high surface pressure, after a phase transition. Packing motifs suggesting a tubular arrangement of the constituting molecules were gleaned from atomic force microscopy (AFM) investigations of Langmuir-Blodgett (LB) monolayers being transferred on HOPG at different surface pressures. These LB film structures are compared to the self-assembled monolayer (SAM) of 3 formed via adsorption from a supersaturated solution, which is studied by scanning tunnelling microscopy (STM). On HOPG the SAM of 3 consists of nanorods with a highly ordered edge-on packing of the aromatic rings and an arrangement of alkyl chains which resembles the packing of molecules at the air/water interface at low surface pressure. Additional details of the molecular packing were gleaned from single-crystal X-ray structure analysis of the hexapyridinium model compound 2b, which possesses methyl instead of eicosyl residues.     

Interplay between H‐Bonding and Alkyl‐Chain Ordering in Self‐Assembly of Monodendritic L‐Alanine Derivatives

This paper reports on the synthesis and self‐organizing properties of monodendrons consisting of L ‐alanine at the focal point and alkyl chains with different length at the periphery. The structures of thin films and monolayers are studied by temperature‐resolved grazing‐incidence X‐ray diffraction and scanning force microscopy. The interplay between H‐bonding and ordering of the alkyl chains results in a rich temperature‐dependent phase behavior. The monodendrons form H‐bonded stabilized clusters with the number of molecules depending on the length of the aliphatic chains and temperature. The clusters play the role of constitutive units in the subsequent self‐assembly. Short alkyl chains allow the material to form thermodynamically stable crystalline phases. The molecules with longer side groups exhibit additional transitions from the crystalline phase to thermotropic columnar hexagonal or columnar rectangular liquid‐crystalline phases. In monolayers deposited on highly ordered pyrolytic graphite, the materials show ordering similar to thin films. However, for the compound bearing hexadecyl chains the affinity of the alkyl groups to graphite dominates the self‐assembly and thereby allows epitaxial growth of a 2D lattice with flat‐on oriented molecules.     

丹皮酚与钙粘素相互作用的分析研究

丹皮酚对多种肿瘤细胞具有抑制作用,而钙粘素是与肿瘤产生和恶化密切相关的一类糖蛋白.本研究运用荧光光谱法和原子力显微技术探索了丹皮酚与钙粘素的相互作用.荧光光谱法研究结果表明,丹皮酚对钙粘素的荧光具有显著的猝灭作用,通过猝灭常数随温度变化趋势推断为静态猝灭过程.丹皮酚与钙粘素形成复合物的热力学参数分别为ΔH=-4.3×10.5 J/mol和ΔS=-1.3×10.3 J/(mol·K), 表明此结合过程以氢键和范德华力为主.原子力显微观察结果表明,钙粘素分子间可形成有序长链结构,丹皮酚加入后能显著破坏这种组装结构而形成短链结构,这是由于丹皮酚与钙粘素末端色氨酸残基的作用而影响相邻钙粘素分子结构域间的交错作用所致.本研究结果表明,钙粘素可能是丹皮酚体现其活性的一个重要作用靶点.     

Microstructure and lateral diffusion in monolayers of polymerizable amphiphiles

Lipid analogue amphiphilic molecules containing polymerizable units were investigated in monolayers at the air/water interface by using film balance measurements, fluorescence microscopy, and photobleaching techniques. The polymerizable groups (diene-, diyne-, and methacrylate units) were introduced into the hydrophobic alkyl chains or into the polar head of the amphiphilic molecules.In the case of the diene- and diyne-containing compounds the polymerizable units are incorporated into the hydrophobic alkyl chains, enabling them to form a two-dimensional network. Due to the free chain flexibility of the monomers the lateral mobility was comparable to that of saturated lipid analogues and decreases upon polymerization proportionally to the dose of UV irradiation. In addition, fluid/solid phase transitions of compounds with polymerizable groups in the hydrophobic part tend to vanish during the formation of the polymers. However, the direct observation of the growth of polymeric crystalline domains can be followed by using diacetylene lipid analogues.In the case of the methacrylate derivatives the polymerizable unit was coupled to the polar part via a flexible spacer. For these systems the characteristics of the monomeric phase transition are retained after polymerization. However, it shows a significant, strong decrease of the in-plane mobility already in the fluid-expanded phase of the polymer. The quantitative measurements of the lateral diffusion in the monolayers can be correlated with fluorescence microscopic images of their structure.