Structures and properties of novel 5,15-di[4-(5-acetylsulfanylpentyloxy)phenyl] porphyrin derivatives: Density functional theory calculations

Density functional theory (DFT) calculations have been carried out in order to compare the molecular structures, atomic charges, molecular orbitals, electronic absorption spectra, and infrared (IR) spectra of the metal-free 5,15 -di[4-(5-acetylsulfanylpentyloxy) phenyl]porphyrin H₂[DPP(OC₅H₁₀SCOCH₃)₂] (1) (DPP = 5,15-diphenylporphyrin) and its zinc complex Zn[DPP(OC₅H₁₀SCOCH₃)₂] (2), which exhibit novel structures with two 5-acetylsulfanylpentyloxy side chains at the para-positions of opposite meso-attached phenyl groups. The calculated molecular structure and electronic absorption and IR spectra of 1 and 2 are consistent with the experimental results. The influences of meso-substitution, polar solvents, and central metal substitution on the structure and properties of porphyrin derivatives have been investigated by comparing the corresponding data for 1 and 2 with the help of data for the unsubstituted porphyrin derivatives, namely the metal-free porphyrin H₂Por (3) and the porphyrinato-zinc compound (4). The identities of the main transitions in the electronic absorption spectra of 1 and 2 are assigned and the vibrational modes in their IR spectra are identified with the assistance of animated pictures produced based on normal coordinates. The theoretical work presented here will be helpful in increasing our understanding of the structure and spectroscopic properties, as well as substituent and solvent effects, for these novel porphyrin compounds.     

Synthesis and characterization of glycol-modified vanadium(V) oxoisopropoxide and their oximato derivatives: sol–gel transformations of [VO(OPr i )3], [VO{OCH2CH2OCH2CH2O}{OPr i }] and [VO{OCH2CH2OCH2CH2O}{ON=C(CH3)(C4H3S-2)}] to vanadia

Reaction of [VO(OPr ⁱ )₃] (1) with [O(CH₂CH₂OH)₂] in 1:1 molar ratio in anhydrous benzene yield glycol-modified precursor, [VO{OCH₂CH₂OCH₂CH₂O}{OPr ⁱ }] (2). Further reactions of (2) with internally functionalized oximes in anhydrous benzene yield heteroleptic complexes of the type [VO{OCH₂CH₂OCH₂CH₂O}{ON=C(R)(Ar)}] (3–8) {where R=CH₃, Ar=C₄H₃O-2 (3), C₄H₃S-2 (4), C₅H₄N-2 (5); and when R=H, Ar=C₄H₃O-2 (6), C₄H₃S-2 (7), C₅H₄N-2 (8)}. All these derivatives have been characterized by elemental analyses, molecular weight measurements and spectroscopic techniques. The crysoscopic molecular weight measurement as well as FAB mass study suggests dimeric nature of (2). However, FAB mass spectrum of (4), and the crysoscopic molecular weight measurements of (3), (4), (5) and (6) indicate the monomeric behavior of the oximato derivatives (3–8). Hexa-coordination around vanadium(V) has been proposed for both monomeric and dimeric derivatives. Sol–gel transformations of (1), (2) or (4) to vanadia [(a), (b) or (c), respectively] have been carried out at low sintering temperature (600 °C). The XRD patterns of (a), (b) or (c) indicate formation of a single orthorhombic phase in all the three cases. The SEM images suggest grain like [for (a) and (b)] and rod like [for (c)] morphology of the crystallites. IR, Raman spectra as well as EDX analyses indicate formation of pure vanadia. Absorption spectra of the vanadia (b) and (c) suggest energy band gaps of 2.53 and 2.65 eV, respectively.     

Thioimidazolate versus pyrazolate-zinc(II)-bound hydroxo complex as structural model for the active site of hydrolytic enzyme: the crystal structure of the inclusion complex TtZn–O–C6H4–p-NO2, Tt?=?hydrotris(N-xylyl-2-thioimidazolyl)borate

The reaction of the tripod ligand hydrotris(N-(2-methylphenyl)-2-thioimidazol-1-yl)borate, Tt with zinc(II) chloride yielded the chloro complex [TtZn–Cl] 1. The hydrolytic reactivity of its hydroxo complex [TtZn–(μ-OH)ZnTt]Cl 2 towards p-nitrophenyl acetate was hampered due to the formation of the stable phenolate complex [TtZn–O–Ar–p-NO₂] 3 as a product inhibition. The X-ray structure analysis of complex 3 was determined and showed that its Zn[S₃O] coordination sphere includes three thione donors from the ligand Tt and one oxygen donor from the hydrolysed product p-nitrophenolate in an ideally tetrahedral arrangement around the zinc(II) centre.     

Synthesis,characterization, and crystal structure of one zinc(II) complex with 4-Hydroxypyridine-2,6-Dicarboxylic acid and 4,4′-bipyridine

A new zinc(II) coordination polymer, {[Zn(HCAM)(4,4′-Bipy)_0.5] · H₂O} _n (I) (H₃CAM = 4-hydroxypyridine-2,6-dicarboxylic acid; 4,4′-Bipy = 4,4′-bipyridine), has been synthesized by hydrothermal reaction of Zn(OAc)₂, H₃CAM and 4,4′-Bipy. It has been structurally characterized by element analysis, IR-spectra. X-ray single-crystal analysis was carried out for I (CIF file CCDC no. 974199), which crystallizes in the orthorhombic system, space group Pbca. The single X-ray diffraction studies reveal that I shows a new 2D wave-like plane with 3-connected net. Furthermore, the thermal stability of compound I was studied.     

Synthesis of some multi-β-substituted cationic porphyrins and studies on their interaction with DNA

A series of multi-β-substituted cationic porphyrins, 2,3,12,13-tetraphenyl-5-(N-trimethyl-4-ammoniumphenyl)-10,15,20-triphenylporphyrin 2; 2,3,12,13-tetramethyl-5-(N-trimethyl-4-ammoniumphenyl)-10,15,20-triphenylporphyrin 3; 2,3,7,8,12,13,17,18-octaphenyl-5-(N-trimethyl-4-ammoniumphenyl)-10,15,20-triphenylporphyrin 4, and 2,3,7,8,12,13,17,18-octaphenyl-5,10-di(N-trimethyl-4-ammoniumphenyl)-15,20-diphenylporphyrin 5, have been synthesized. Their photooxidative abilities and interaction with DNA were investigated by UV, fluorescence, CD, and gel electrophoresis. It is found that substituents at β-position of the porphyrins have significant effect on interactions and binding mode of the porphyrins with DNA. Increasing positive charges in the porphyrins strengthen their interactions with DNA.     

Synthesis, Raman, X-ray diffraction, and density functional studies of antimony(III) heterotetracycles displaying intramolecular transannular interactions O → Sb

A set of compounds of general formula [{S(C₆H₃S)₂O}SbHal] [Hal = Cl (1), Br (2), I (3)] has been synthesized and studied by Raman and NMR spectroscopy as well as quantum chemical DFT calculations. X-ray diffraction studies of compound 2 revealed that the oxygen atom participates as donor and the antimony atom plays the role of acceptor, adopting a Ψ-distorted trigonal bi-pyramidal geometry, where the eight-membered central ring displays a boat–boat conformation. Furthermore, a series of DFT calculations was performed on compounds 1–3 as well as calculations on the non-synthesized heterotetracyclic systems [{S(C₆H₃S)₂O}SbF] (4a) and the cation [{S(C₆H₃S)₂O}Sb]⁺ (5a). The theoretic study at DFT level indicates as the electronegativity increases at exocyclic substituent along the set of compounds, the interaction is stronger. Moreover, the topological analysis of electronic density showed the existence of critical points along the O → Sb direction which prompted us to suggest the existence of a dative bond.     

Hydrothermal synthesis, crystal structure, and luminescence of a novel tetranuclear zinc(ii) complex

A new tetranuclear zinc(II) complex [Zn₄(tmphen)₄(tbip)₄(H₂O)₄] (1, tmphen = 3,4,7,8-tetramethyl-1,10-phenanthroline, H₂tbip = 5-tert-butyl isophthalic acid) is hydrothermally synthesized and structurally characterized by single crystal X-ray diffraction, elemental analysis, and IR spectroscopy. In complex 1, four tbip^2? ligands act as bridges between four neighboring Zn atoms to form an unusual tetranuclear zinc cluster. The clusters are further connected by two types of O-H…O and C-H…O hydrogen bonds, generating a three-dimensional supramolecular structure. Meanwhile, π-π stacking interactions and C-H…π interactions further consolidate the three-dimensional supramolecular framework of 1. In addition, the luminescence measurements reveal that complex 1 exhibits strong fluorescent emissions in the solid state at room temperature.     

Synthesis and properties of ZnII and CdII complexes with chiral N-derivatives of aminoacetic acid based on natural monoterpenes (+)-3-carene and (?)-��-pinene. Crystal structure of coordination polymer [Zn(HL)Cl��2H2O] n

Chiral sodium salts of N-derivatives of aminoacetic acid based on (+)-3-carene (HLNa) and (?)-??-pinene (HLNa) were synthesized. Complexes Zn(HL)Cl (1), Cd(HL)Cl·0.5H₂O (3), Zn(HL??)Cl·0.5H₂O (4), and Cd(HL??)Cl·0.5H₂O (5) were obtained. The single crystals of the coordination polymer [Zn(HL)Cl·2H₂O] _n (2) were grown. According to the X-ray diffraction analysis, the crystal structure of 2 consists of 1D chains built of Zn(HL)Cl and water molecules. The coordination polyhedron ClN₂O₂ is a distorted square pyramid. The HL^? ligand performs the chelating tetradentate-bridging function, and the COO^? group binds two adjacent Zn atoms. The IR spectroscopy data for compounds 1 and 3?C5 indicate the coordination of the COO^?, NOH, and NH functional groups. The excitation and photoluminescence (PLM) spectra of the solid samples of compounds HLNa, HL??Na, 1, and 3?C5 were recorded at room temperature. The compounds exhibit blue PLM. The intensity of PLM of the CdII complexes is higher than that of the ZnII complexes, which is a characteristic feature of PLM of the studied compounds.     

pH-dependent syntheses and crystal structures, characterizations, and DFT calculations of complexes with 2,2′-biimidazole and terephthalic acid ligands

The divalent transition metal complexes [Zn(L)₂(H₂O)₂](Tere) (I), [Cd(L)₂(H₂O)₂](Tere]) (II) and [Cd(L)₂(HTere)₂] (III) (L = 2,2’-biimidazole, Tere = terephthalate) have been synthesized under hydrothermal conditions and characterized by elemental analysis, IR spectrum, thermal analysis and single-crystal X-ray diffraction analysis. Complexes II and III have the same starting materials but possess different frame-works and are prepared from H₂Biim and H₂Tere under hydrothermal conditions with different pH values. The crystal structures show I and II have the same coordination circumstances and are coordinated by two H₂O molecules and two neutral bidentate 2,2′-biimidazole ligands. The terephthalate acts as the counter anion. In contrast, complex III contains protonated carboxylate groups coordinated to the metal centre to give neutral species. Furthermore, based on the optimized structures, molecular frontier orbitals, Mulliken charges and IR spetra of complex I and III are investigated by density functional theory. Calculated results show that the energy gap (ΔE _L-H) between HOMO and LUMO of complex III is bigger than that of I. It is revealed that complex III is more stable, and this calculated estimation corresponds with experimental analysis of TGA curves.     

Formations and structures of cobalt dithiolene complexes with nitrogen group-substituted cyclopentadienyl ligands

The cobalt dithiolene complex with the sulfonylamide-substituted Cp ligand [(C₅H₄-NHTs)Co{S₂C₂(COOMe)₂}] (1, Ts = p-SO₂C₆H₄Me) reacted with TsOH · H₂O to give [(C₅H₄-NH₂)Co{S₂C₂(COOMe)(H)}] (2), [(C₅H₄-NHTs)Co(S₂C₂H₂)] (3) and [(C₅H₄-NHTs)Co{S₂C₂(COOMe)(H)}] (4). Complex 1 was dissolved in a basic aqueous solution, and the anion reacted with Me₂SO₄ to form the N-methylated product [{C₅H₄-N(Me)Ts}Co{S₂C₂(COOMe)₂}] (5); the carboxylic acid complex [{C₅H₄-N(Me)Ts}Co{S₂C₂(COOMe)(COOH)}] (6) formed by a base hydrolysis. The X-ray crystal structures of complexes 4-6 and the methylsulfonylamide-substituted Cp complex [(C₅H₄-NHMs)Co{S₂C₂(COOMe)₂}] (7, Ms = SO₂Me) were determined. In the crystal structures of complexes 4 and 7, intermolecular hydrogen bondings of NH?O (ca. 2.1 Å) and NH?S (ca. 3.1 Å) were observed. Complex 6 showed the OH?O intermolecular hydrogen bonding (ca. 1.6 Å) of COOH moiety between two molecules, and these two molecules were assembling each other. Complexes 5 and 6 showed an intramolecular π-π interaction between the aromatic cobaltadithiolene and benzene rings, and complex 5 also has intermolecular π-π interactions between two benzene rings, and between two cobaltadithiolene rings.     

Synthesis and crystal and molecular structures of new copper and zinc complexes with aza-14-crown-4 ether having di(α-pyridyl)-substituted bispidine subunit

The complexes [Cu(L)(H₂O)](ClO₄)₂ · 2H₂O (I) and [Zn(L)Cl₂] · C₂H₅OH (II), where L is the macrocyclic substituted aza-14-crown-4 ether molecule containing di(α-pyridyl)bispidine insert, were synthesized and studied by X-ray diffraction. The Cu atoms in complex I and the Zn atoms in complex II have equal coordination numbers of 5 and different highly distorted polyhedra (the CuN₄O tetragonal pyramid and ZnN₃Cl₂ trigonal bipyramid). Ligand L in structure I performs the tetradentate tetrachelate (4N) structural function and in II, it performs the tridentate bis-chelate (3N) function. The key difference between the structures of complexes I and II is determined by different conformations of both the aza-macrocycles and bispidine substituents of ligand L.     

Ring-opening Copolymerization of Cyclohexene Oxide and Maleic Anhydride Catalyzed by Mononuclear [Zn（L）（H2O）] or Binuclear [Zn2（L）（OAc）2（H2O）] Complex Based on the Salen-type Schiff-base Ligand

From the self-assembly of the typical Salen-type Schiff-base ligand H2L and Zn(OAc)2·2H2O in the molar ratio of 1:1 or 1:2, the mononuclear [Zn(L)(H2O)](1) or binuclear [Zn2(L)(OAc)2(H2O)](2) are obtained, respectively. For both complexes 1 and 2, the unsaturated five-coordinate coordination environment to the catalytic active centers(Zn2+ ions) permits the monomer insertion for the effective solution copolymerization of cyclohexene oxide and maleic anhydride. All the solution copolymerizations afford poly(ester-co-ether)s, while lower catalyst and co-catalyst concentrations are helpful for the formation of alternating polyester. Of the three co-catalysts, 4-(dimethylamino)pyridine is found to be the most efficient, while an excess thereof is detrimental for chain growth of the copolymers.     

Two Zn(II) and one Mn(II) complexes using two different hydrazone ligands: spectroscopic studies and structural aspects

Three new coordination complexes of Zn(II) and Mn(II) have been synthesised using two different tridentate N,N,O donor hydrazone ligands, Hpbh and Hacpbh respectively. The complexes [Zn(pbh)₂] (1) and [Zn(acpbh)₂] (2) have been synthesized by the treatment of ZnSO₄ · 7H₂O with Hpbh and Hacpbh hydrazone ligands, respectively. The Mn(II) complex [Mn(acpbh)₂] (3) was obtained on reacting Mn(NO₃)₂ · 4H₂O with the ligand Hacpbh. The ligands Hpbh and Hacpbh were prepared by condensing pyridine-2-carboxaldehyde and 2-acetylpyridine with benzhydrazide respectively. Inspite of varying the carbonyl functionality attached to the pyridine moiety present in the hydrazone ligands in both the Schiff bases, we obtained three mononuclear complexes 1, 2, and 3 which were clearly characterized from single crystal X-ray diffraction studies. Spectroscopic investigations like IR and UV/Vis have been carried out for 1, 2, and 3. Fluorescence studies have been performed for 1 and 2. For 3 cyclic voltammetry, room temperature magnetic study and EPR measurements have been recorded.     

Hydrothermal synthesis and crystal structure of a new 2D metal-organic framework: [Zn(Btca)(Phen)] n (H2Btca = benzotriazole-5-carboxylic acid, phen = 1,10-phenanthroline)

A new coordination polymer, [Zn(Btca)(Phen)] _n (I) (H₂Btca = benzotriazole-5-carboxylic acid, Phen = 1,10-phenanthroline), has hydrothermally been synthesized by the reaction of zinc nitrate, H₂Btca and Phen in the presence of DMF and H₂O. Single-crystal X-ray diffraction analysis reveals that in complex I the metal centers are linked by the bridging Btca ligand to form an extended two-dimensional wave-like layer decorated by Phen.     

The conditions of formation of heterometallic complexes in the GeCl4 (SnCl4)-citric acid-M(CH3COO)2-H2O systems. The crystal and molecular structures of [M(H2O)6][Ge(HCit)2] · 4H2O (M = Mg, Mn, Co, Cu, Zn) and [M(H2O)6][Sn(HCit)2] · 4H2O (M = Mg, Co, Ni)

Fourteen bis(citrato)germanates(IV) and bis(citrato)stannates(IV) were prepared, in particular, [M(H₂O)₆][Ge(HCit)₂] · 4H₂O (M = Mg (I), Mn (II), Fe (III), Co (IV), Ni (V), Cu (VI), Zn (VII)) and [M(H₂O)₆][Sn(HCit)₂] · nH₂O (M = Mg, n = 4 (VIII); Mn, n = 2 (IX); Fe, n = 4 (X); Co, n = 4 (XI); Ni, n = 4 (XII); Cu, n = 4 (XIII); Zn, n = 3 (XIV)) (H₄Cit is citric acid). The purity and the composition of the products were determined by a set of physicochemical methods including elemental analysis, thermogravimetry, and IR spectroscopy. The structures of I, II, IV, VI, VII, VIII, XI, and XII were determined by X-ray diffractometry. All eight crystals composed of centrosymmetrical octahederal [M(H₂O)₆]²⁺ cations, [Ge(HCit)₂]^2? (or [Sn(HCit)₂]^2?) anions, and crystal water molecules are isostructural. The structural units in I, II, IV, VI, VII, VIII, XI, and XII are connected by systems of hydrogen bonds to form a three-dimensional framework.     

Synthesis, crystal structure, and luminescence properties of coordination polymers based on cadmium isonicotinates

Heating a solution of cadmium nitrate and isonicotinic acid in N,N′-dimethylformamide or dimethyl sulfoxide gave three new coordination polymers, [Cd(Inic)₂] · 0.5DMF (I), [Cd₃(DMSO)₆(Inic)₂(SO₄)₂] (II), and [{Cd(DMSO)(Inic)}₂(SO₄)] · 2H₂O (III), which were studied by X-ray crystallography. Compounds I and III were characterized by IR spectroscopy and elemental and thermogravimetric analyses and luminescence spectroscopy.     

Light-harvesting composites of directly connected porphyrin-phthalocyanine dyads and their coordination dimers

Directly linked porphyrin (Por)-phthalocyanine (Pc) heterodyads (H₂Por-H₂Pc and H₂Por-ZnPc) with an imidazolyl group at porphyrin’s meso-position were synthesized. Introduction of a zinc ion into the porphyrin afforded stable complementary dimers of the heterodyads. The heterodyads and their dimers gave extensive and strong absorption bands owing to the porphyrin and phthalocyanine components and induced an efficient energy transfer from porphyrin to phthalocyanine. Strong fluorescence from phthalocyanine was observed in the case of H₂Por-H₂Pc.     

Strapped porphyrin rosettes based on the melamine-cyanuric acid motif. Self-assembly and supramolecular recognition

This paper describes studies on the synthesis, self-assembly behavior, and complexing properties of several strapped porphyrin-incorporated melamine-cyanuric or melamine-barbiturate-based rosette supramolecules in chloroform-d. Strapped porpyrin cyanuric acid H₂1 and its Zn (II) complex Zn1 were designed and synthesized. Both H₂1 and Zn1 could combine melamine derivatives 11 or 12 to afford porphyrin rosettes, which are more stable than the model rosette initially reported by Whitesides due to the larger size of the porphyrin unit. The new porphyrin rosettes could efficiently complex tripyridyl derivative 13 through intermolecular, cooperative coordination between Zn (II) and pyridine. Two new pyridine-bearing barbiturates 18a and 18b were also synthesized. Mixing the identical amount of 18a or 18b with 11 or 12 in chloroform-d led to the formation of new isomeric rosettes as a result of different orientation of the pyridine unit of 18a or 18b in the rosettes. ¹H NMR study also revealed that porpyrin-bearing rosette Zn1₃·11₃ could complex pyridine-bearing rosette 11₃·18a₃, leading to the formation of new two-layer-typed supramolecular architectures.     

Novel mono- and dinucleating ligands-containing artificial di- and tetrahistidine and their zinc(II) complexes as a structural phosphotriesterase models for the hydrolysis of p-nitrophenyl diphenylphosphate (p-NPDPP)

Two new artificial peptides with histidine side chains, namely N-methyl N,N′-bis(Im-bzl-l-histidylmethylestermethyl)amine L1 and N,N′,N″,N?-tetrakis(Im-bzl-l-histidylmethyl-estermethyl)ethylene diamine L2 have been synthesized and were shown to form stable zinc complexes [L1Zn(H₂O)₂](ClO₄)₂ 1 and [L2Zn₂(H₂O)₃](ClO₄)₄ 2, respectively. Solution studies (pH–¹NMR titrations) of the ligand L2 in the presence of zinc ions were also reported. The catalytic activity of zinc complex species 1 and 2 as structural phosphotriestrase models were tested on the hydrolysis/detoxification of p-nitrohenl diphenylphosphate (p-NPDPP). From the correlation between the pH-rate profiles and the species distribution curves, the catalytically active species could be identified. On the basis of R-dependence as well as the rate acceleration of each complex, the possibility of cooperative action of zincs in dinuclear zinc complex is debated.     

Coordination polymer with the framework structure [Zn2(DMA)(Atc)] · DMA: Synthesis, structure, and properties

Crystals of a new coordination polymer with the framework structure, [Zn₂(DMA)(Atc)] · DMA (I), were prepared by heating a solution of Zn(NO₃)₂ · 6H₂O and H₄Atc (H₄Atc is 1,3,5,7-adamantanetetracarboxylic acid) in N,N′-dimethylacetamide (DMA). Colorless crystals of Zn₂(Atc) · 2MeOH · 4H₂O (II) were obtained by soaking the crystals of compound I in methanol. The structure of compound I was determined by X-ray diffraction analysis. Compounds I and II were characterized by X-ray powder diffraction, IR spectroscopy, thermal gravimetric analysis, and elemental analysis. The luminescence properties of compound I were studied.