Theoretical Investigation of the OH.‐Initiated Oxidation of Benzaldehyde in the Troposphere

A mechanistic and kinetic study of the OH^.‐initiated oxidation of benzaldehyde is carried out using quantum chemical methods and classical transition state theory. We calculate the rate constant for this reaction within the temperature range of 200–350 K at atmospheric pressure. All possible hydrogen abstraction and OH^. addition channels are considered and branching ratios are obtained. Tunneling corrections are taken into account for abstraction channels, assuming unsymmetrical Eckart barriers. The aldehydic abstraction is by far the most important reaction channel within the entire range of temperatures studied, especially at room temperature and lower—the temperatures relevant to atmospheric chemistry. The relative importance of all the other possible channels increases slightly with temperature. Branching ratios show that addition at the ring and abstraction of an ortho hydrogen contribute about 1 % each at about 300 K, while the branching ratio for the main reaction decreases from 99 % at 200 K to 93 % at 350 K. The results are compared with available experimental measurements.     

The Stability of α‐Hydroperoxyalkyl Radicals

High‐level ab initio and Born–Oppenheimer molecular dynamic calculations have been carried out on a series of hydroperoxyalkyl (α‐QOOH) radicals with the aim of investigating the stability and unimolecular decomposition mechanism into QO+OH of these species. Dissociation was shown to take place through rotation of the C?O(OH) bond rather than through elongation of the CO?OH bond. Through the C?O(OH) rotation, the unpaired electron of the radical overlaps with the electron density on the O?OH bond, and from this overlap the C=O π bond forms and the O?OH bond breaks spontaneously. The CH₂OOH, CH(CH₃)OOH, CH(OH)OOH, and α‐hydroperoxycycloheptadienyl radical were found to decompose spontaneously, but the CH(CHO)OOH has a decomposition energy barrier of 5.95 kcal mol^?1 owing to its steric and electronic features. The systems studied in this work provide the first insights into how structural and electronic effects govern the stabilizing influence on elusive α‐QOOH radicals.     

Synthetic and Structural Studies of 1,8‐Chalcogen Naphthalene Derivatives

Four novel 1,8‐disubstituted naphthalene derivatives 4 – 7 that contain chalcogen atoms occupying the peri positions have been prepared and fully characterised by using X‐ray crystallography, multinuclear NMR spectroscopy, IR spectroscopy and MS. Molecular distortion due to noncovalent substituent interactions was studied as a function of the bulk of the interacting chalcogen atoms and the size and nature of the alkyl group attached to them. X‐ray data for 4 – 7 was compared to the series of known 1,8‐bis(phenylchalcogeno)naphthalenes 1 – 3 , which were themselves prepared from novel synthetic routes. A general increase in the E???E′ distance was observed for molecules containing bulkier atoms at the peri positions. The decreased S???S distance from phenyl‐ 1 and ethyl‐ 4 analogues is ascribed to a weaker chalcogen lone pair–lone pair repulsion acting in the ethyl analogue due to the presence of two equatorial S(naphthyl) ring conformations. Two novel peri‐substituted naphthalene sulfoxides of 1 , Nap(O?SPh)(SPh) 8 and Nap(O?SPh)₂ 9 , which contain different valence states of sulfur, were prepared and fully characterised by using X‐ray crystallography and multinuclear NMR spectroscopy, IR spectroscopy and MS. Molecular structures were analysed by using naphthalene ring torsions, peri‐atom displacement, splay angle magnitude, S???S interactions, aromatic ring orientations and quasi‐linear O?S???S arrangements. The axial S(naphthyl) rings in 8 and 9 are unfavourable for S???S contacts due to stronger chalcogen lone pair–lone pair repulsion. Although quasi‐linear O?S???S alignments suggest attractive interaction is conceivable, analysis of the B3LYP wavefunctions affords no evidence for direct bonding interactions between the S atoms.     

On the Reaction of Glycerol Dehydratase with But‐3‐ene‐1,2‐diol

Intriguing inactivation : Calculations suggest that the ability of relatively high‐energy radical intermediates to inactivate glycerol dehydratase (GDH) may reflect a general and hitherto unidentified inactivation mechanism in the reaction of coenzyme B₁₂‐dependent enzymes and 3‐unsaturated 1,2‐diols (see scheme; AdoCbl: adenosylcobalamin or coenzyme B₁₂).

     

Reaction of Paramagnetic Synthon,Lithiated 4,4,5,5‐Tetramethyl‐4,5‐dihydro‐1H‐imidazol‐1‐oxyl 3‐oxide,with Cyclic Aldonitrones of the Imidazole Series

It was shown that dipole‐stabilized paramagnetic carbanion lithiated 4,4,5,5‐tetramethyl‐4,5‐dihydro‐1H‐imidazol‐1‐oxyl 3‐oxide can be attached in a nucleophilic manner to either isolated or conjugated aldonitrones of the 2,5‐dihydroimidazole 3‐oxide and 2H‐imidazole 1‐oxide series to afford adducts the subsequent oxidation of which leads to polyfunctional mono‐ and diradicals. According to XRD, at least two polymorphic modifications can be formed during crystallization of the resulting paramagnetic compounds, and for each of them, geometric parameters of the molecules are similar. An EPR spectrum of the diradical in frozen toluene has a complicated lineshape, which can be fairly well reproduced by using X‐ray diffraction structural analysis and the following set of parameters: D=14.9 mT, E=1.7 mT; tensor a(¹⁴N)=[0.260 0.260 1.625] mT, two equivalent tensors for the nitronyl nitroxide moiety a(¹⁴N)=[0.198 0.198 0.700] mT, and g≈2.007. According to our DFT and ab initio calculations, the intramolecular exchange in the diradical is very weak and most likely ferromagnetic.     

Theoretical Study on the Complexes of Benzene with Isoelectronic Nitrogen‐Containing Heterocycles

The π–π interactions between benzene and the aromatic nitrogen heterocycles pyridine, pyrimidine, 1,3,5‐triazine, 1,2,3‐triazine, 1,2,4,5‐tetrazine, and 1,2,3,4,5‐pentazine are systematically investigated. The T‐shaped structures of all complexes studied exhibit a contraction of the C? H bond accompanied by a rather large blue shift (40–52 cm^?1) of its stretching frequency, and they are almost isoenergetic with the corresponding displaced‐parallel structures at reliable levels of theory. With increasing number of nitrogen atoms in the heterocycle, the geometries, frequencies, energies, percentage of s character at C, and the electron density in the C? H σ antibonding orbital of the complexes all increase or decrease systematically. Decomposition analysis of the total binding energy showed that for all the complexes, the dispersion energy is the dominant attractive contribution, and a rather large attraction originating from electrostatic contribution is compensated by its exchange counterpart.     

Theoretical Study on Gas—phase Pyrolytic Reactions of N—Ethyl,Isopropyl and N—t—Butyl Substituted 2—Aminopyrazine

Density functional theory (DFT) and ab initio methods were used to study gas‐phase pyrolytic reaction mechanisms of iV‐ethyl, N‐isopropyl and N‐t‐butyl substituted 2‐aminopyrazine at B3LYP/6–31G* and MP2/6–31G*, respectively. Single‐point energies of all optimized molecular geometries were calculated at B3LYP/6–311 + G(2d,p) level. Results show that the pyrolytic reactions were carried out through a unimolecular first‐order mechanism which were caused by the migration of atom H(17) via a six‐member ring transition state. The activation energies which were verified by vibrational analysis and correlated with zero‐point energies along the reaction channel at B3LYP/6–311 + G(2d,p) level were 252.02 kJ. mo^?1 (N‐ethyl substituted), 235.92 kJ‐mol^?1 (N‐t‐isopropyl substituted) and 234.27 kJ‐mol^?1 (N‐t‐butyl substituted), respectively. The results were in good agreement with available experimental data.     

Bimolecular Homolytic Substitutions at Nitrogen: An Experimental and Theoretical Study on the Gas‐Phase Reactions of Alkyl Radicals with NF3

The X‐ray irradiation of binary mixtures of alkyl iodides R?I (R=CH₃, C₂H₅, or i‐C₃H₇ radicals) and NF₃ produces R?NF₂ and R?F. Based on calculations performed at the CCSD(T), MRCI(SD+Q), G3B3, and G3 levels of theory, the former product arises from a bimolecular homolytic substitution reaction (S_H2) by the alkyl radicals R, which attack the N atom of NF₃. This mechanism is consistent with the suppression of R?NF₂ by addition of O₂ (an efficient alkyl radical scavenger) to the reaction mixture. The R?F product arises from the attack of R to the F atom of NF₃, but additional contributing channels are conceivably involved. The F‐atom abstraction is, indeed, considerably more exothermic than the S_H2 reaction, but the involved energy barriers are comparable, and the two processes are comparably fast.     

Enhanced Reactivities of Iron(IV)‐Oxo Porphyrin π‐Cation Radicals in Oxygenation Reactions by Electron‐Donating Axial Ligands

The proximal axial ligand in heme iron enzymes plays an important role in tuning the reactivities of iron(IV)‐oxo porphyrin π‐cation radicals in oxidation reactions. The present study reports the effects of axial ligands in olefin epoxidation, aromatic hydroxylation, alcohol oxidation, and alkane hydroxylation, by [(tmp)^+. Fe^IV(O)(p‐Y‐PyO)]⁺ ( 1 ‐Y) (tmp=meso‐tetramesitylporphyrin, p‐Y‐PyO=para‐substituted pyridine N‐oxides, and Y=OCH₃, CH₃, H, Cl). In all of the oxidation reactions, the reactivities of 1 ‐Y are found to follow the order 1 ‐OCH₃ > 1 ‐CH₃ > 1 ‐H > 1 ‐Cl; negative Hammett ρ values of ?1.4 to ?2.7 were obtained by plotting the reaction rates against the σ_p values of the substituents of p‐Y‐PyO. These results, as well as previous ones on the effect of anionic nucleophiles, show that iron(IV)‐oxo porphyrin π‐cation radicals bearing electron‐donating axial ligands are more reactive in oxo‐transfer and hydrogen‐atom abstraction reactions. These results are counterintuitive since iron(IV)‐oxo porphyrin π‐cation radicals are electrophilic species. Theoretical calculations of anionic and neutral ligands reproduced the counterintuitive experimental findings and elucidated the root cause of the axial ligand effects. Thus, in the case of anionic ligands, as the ligand becomes a better electron donor, it strengthens the FeO? H bond and thereby enhances its H‐abstraction activity. In addition, it weakens the Fe?O bond and encourages oxo‐transfer reactivity. Both are Bell–Evans–Polanyi effects, however, in a series of neutral ligands like p‐Y‐PyO, there is a relatively weak trend that appears to originate in two‐state reactivity (TSR). This combination of experiment and theory enabled us to elucidate the factors that control the reactivity patterns of iron(IV)‐oxo porphyrin π‐cation radicals in oxidation reactions and to resolve an enigmatic and fundamental problem.     

Enthalpy and Entropy Barriers Explain the Effects of Topology on the Kinetics of Zeolite‐Catalyzed Reactions

The methylation of ethene, propene, and trans‐2‐butene on zeolites H‐ZSM‐58 (DDR), H‐ZSM‐22 (TON), and H‐ZSM‐5 (MFI) is studied to elucidate the particular influence of topology on the kinetics of zeolite‐catalyzed reactions. H‐ZSM‐58 and H‐ZSM‐22 are found to display overall lower methylation rates compared to H‐ZSM‐5 and also different trends in methylation rates with increasing alkene size. These variations may be rationalized based on a decomposition of the free‐energy barriers into enthalpic and entropic contributions, which reveals that the lower methylation rates on H‐ZSM‐58 and H‐ZSM‐22 have virtually opposite reasons. On H‐ZSM‐58, the lower methylation rates are caused by higher enthalpy barriers, owing to inefficient stabilization of the reaction intermediates in the large cage‐like pores. On the other hand, on H‐ZSM‐22, the methylation rates mostly suffer from higher entropy barriers, because excessive entropy losses are incurred inside the narrow‐channel structure. These results show that the kinetics of crucial elementary steps hinge on the balance between proper stabilization of the reaction intermediates inside the zeolite pores and the resulting entropy losses. These fundamental insights into their inner workings are indispensable for ultimately selecting or designing better zeolite catalysts.     

The Low‐Lying Excited States of 2,2′‐Bithiophene: A Theoretical Analysis

The low‐energy regions of the singlet→singlet, singlet→triplet, and triplet→triplet electronic spectra of 2,2′‐bithiophene are studied using multiconfigurational second‐order perturbation theory (CASPT2) and extended atomic natural orbitals (ANO) basis sets. The computed vertical, adiabatic, and emission transition energies are in agreement with the available experimental data. The two lowest singlet excited states, 1¹B_u and 2¹B_u, are computed to be degenerate, a novel feature of the system to be borne in mind during the rationalization of its photophysics. As regards the observed high triplet quantum yield of the molecule, it is concluded that the triplet states 2³A_g and 2³B_u, separated about 0.4 eV from the two lowest singlet excited states, can be populated by intersystem crossing from nonplanar singlet states.     

Theoretical Characterisation of Phosphinyl Radicals and Their Magnetic Properties: g Matrix

The g matrices (g tensors) of various phosphinyl radicals (R₂P^.) were calculated using the DFT and multireference configuration interaction (MRCI) methods. The g matrices were distinctly dependent on the molecular structure of the radical. To thoroughly examine this dependence, the contributions from individual atoms and excited states were calculated. The former revealed the gain from the phosphorus atom to be preeminent unless P?O or P?S bonds are present in the radical molecule. The contributions owing to excited states arising from electronic transitions between doubly occupied molecular orbitals and the SOMO were clearly positive, as in the case of semiquinone and niroxide radicals. The transitions from the phosphorus lone pair were of paramount importance. Surprisingly, unlike for semiquinones and nitroxides, a significant negative contribution was observed from excitations from the SOMO to unoccupied molecular orbitals. For radicals with P?O bonds, this contribution to the g₂ component was dominant.     

A New Approach to the Design of Neutral 10‐C‐5 Trigonal‐Bipyramidal Carbon Compounds: A “π‐Electron Cap” Effect

DFT (B3LYP, M06‐2X) and MP2 methods are applied to the design of a wide series of the potentially 10‐C‐5 neutral compounds based on 6‐azabicyclotetradecanes: XC¹(YCH₂CH₂CH₂)₃N 1 – 3 , XC¹(YC₆H₄CH₂)₃N 4 – 6 , XC¹[Y(tBuC₆H₃)CH₂]₃N 7 – 9 and carbatranophanes 10 – 25 (X=Me, F, Cl; Y=O, NH, CH₂, SiH₂; Z=O, CH₂, (CH₂)₂, (CH₂)₃). Carbatranophanes 10 – 25 are characterized by a sterical compression of their axial 3c–4e XC¹←N fragment with respect to that in the parent molecules 4 – 6 . A magnitude of the revealed effect depends on a valence surrounding of the central carbon atom C¹, the size and the nature of the side chains (Z) that link the “π‐electron cap” with a tetradecane backbone. This circumstance allowed us to obtain 10‐C‐5 structures with the configuration of the bonds around the C¹ atom, which corresponds to practically an ideal trigonal bipyramid. In these compounds, the values of the covalence ratio χ of approximately 0.6 for the coordination C¹←N contacts with a covalent contribution (atoms in molecules (AIM) and natural bond orbital (NBO)) are record in magnitude. These values lie close to a low limit of the interval of the χ_Si←D change (0.6–0.9) being characteristic of the dative and ionic‐covalent (by nature) Si←D bond (D=N, O) in the known 10‐Si‐5 silicon compounds.     

Experimental and Theoretical Studies on the Rearrangement of 2‐Oxoazepane α,α‐Amino Acids into 2′‐Oxopiperidine β2,3,3‐Amino Acids: An Example of Intramolecular Catalysis

Enantiopure β‐amino acids represent interesting scaffolds for peptidomimetics, foldamers and bioactive compounds. However, the synthesis of highly substituted analogues is still a major challenge. Herein, we describe the spontaneous rearrangement of 4‐carboxy‐2‐oxoazepane α,α‐amino acids to lead to 2′‐oxopiperidine‐containing β^2,3,3‐amino acids, upon basic or acid hydrolysis of the 2‐oxoazepane α,α‐amino acid ester. Under acidic conditions, a totally stereoselective synthetic route has been developed. The reordering process involved the spontaneous breakdown of an amide bond, which typically requires strong conditions, and the formation of a new bond leading to the six‐membered heterocycle. A quantum mechanical study was carried out to obtain insight into the remarkable ease of this rearrangement, which occurs at room temperature, either in solution or upon storage of the 4‐carboxylic acid substituted 2‐oxoazepane derivatives. This theoretical study suggests that the rearrangement process occurs through a concerted mechanism, in which the energy of the transition states can be lowered by the participation of a catalytic water molecule. Interestingly, it also suggested a role for the carboxylic acid at position 4 of the 2‐oxoazepane ring, which facilitates this rearrangement, participating directly in the intramolecular catalysis.     

Experimental and Theoretical Study of Tunable 1,3‐Lithium Shift of Propargylic/Allenylic Species,Transmetallation, and Pd‐Catalyzed Cross‐Coupling Reactions

The highly selective tuning of the isomerization from 1‐arylalka‐1,2‐dien‐1‐yllithium to 1‐arylalka‐1,2‐dien‐3‐yllithium has been realized in the deprotonation of 1‐arylalk‐1‐yne (conditions A and B) and carbolithiation of 1‐arylbut‐3‐en‐1‐yne with alkyllithium (conditions C and D). Subsequent transmetallation and Pd‐catalyzed Negishi coupling reactions afforded 1,1‐diaryl or 1,3‐diaryl allenes with high selectivity. Deuterium‐labeling cross experiments indicated that an intermolecular lithiation process occurred in both 1,3‐lithium shift conditions (conditions B and D). 1‐Arylalka‐1,2‐diene was confirmed experimentally to be the intermediate. A computational study at the B3LYP level for the isomerization indicated that the acidity of H at the 3‐position is higher than that of the H at the 1‐position of 1‐phenyl‐1,2‐butadiene. Under conditions B, iPr₂NH acts as a proton carrier to finish the 1,3‐lithium shift. The overall activation barrier for the rate‐determining step in the solvated models is ≈21.0 kcal mol^?1, indicating that the isomerization is reasonable at room temperature. For the isomerization under conditions D, DFT calculations indicated that the addition of TMEDA (tetramethylethylenediamine) and HMPA (hexamethylphosphoramide) changes the global minimum of the system; among the possible mechanisms (P1–P5) considered, the mechanism catalyzed by dilithiated species (P5) is the most probable one. The overall activation barriers for isomerization in THF and TMEDA solvated models are 22.6 and 19.7 kcal mol^?1, respectively, proving that the isomerization may proceed at RT in THF or at ?78 °C with TMEDA, due to the fact that the solvation of the additives may increase the concentration of 1‐phenyl‐1,2‐butadienyllithium monomer by a deaggregation effect.     

Investigation into the Regiochemistry of 1,3‐Dipolar Cycloaddition of C,N‐Diphenyl Nitrone with Some Vinyl Sulfoximines as Dipolarophile: Theoretical Studies

The regiochemistry of 1,3‐dipolar cycloaddition reactions of C,N‐diphenyl nitrone with some vinyl sulfox‐ imines as dipolarophile was investigated using density functional theory (DFT)‐based reactivity indexes and activation energy calculations at B3LYP/6‐31G(d) level of theory. Analysis of the geometries and bond orders (BOs) at the TS structures associated with the different reaction pathways shows that these 1,3‐dipolar cycloaddition reactions occur via an asynchronous concerted mechanism. Analysis of the local electrophilicity and nucleophilicity indexes permits an interpretation about the regioselectivity of these 1,3‐dipolar cycloaddition reactions. The theoretical results obtained in the work clearly predict the regiochemistry of the isolated cycloadducts and agree to experimental outcomes.