Constraints on {\rm I}\beta cellulose twist from DFT calculations of ^{13}\hbox {C} NMR chemical shifts

We investigate theoretically the NMR response of twisted configurations of \({\rm I}\beta\) cellulose in the tg conformation. These finite helical angle structures were constructed by a mathematical deformation of zero-angle configurations obtained via the periodic density functional energy minimizations with dispersion corrections (DFT-D2). Subsequent calculations of the \({^{13}\hbox {C}}\) nuclear magnetic resonance chemical shifts \(({\delta}^{13} \hbox {C})\) were compared with experimental findings by Erata et al. (Cellul Commun 4:128–131, 1997) and Kono et al. (Macromolecules 36:5131–5138, 2003). We determine the sensitivity of the NMR chemical shifts to helical deformation of the microfibril and find that a substantial range of helical angle, ±2 degrees/nm, is consistent with current experimental observations, with a most probable angle of ～0.2 degree/nm. Through exhaustive combinatorial provisional assignments, we also demonstrate that there are different choices of the chemical shift \(({\delta}^{13} \hbox {C})\) assignments which are consistent with the experiments, including ones with lower deviations than existing identifications.     

The HOMFLY polynomials of odd polyhedral links

This paper extends the methodology for the construction of odd polyhedral links. Building blocks are odd chain tangles, each of which consists of finitely many $2n+1$ -twist tangles for any nonnegative integer $n$ . For any polyhedral graph $G$ , replacing each edge with an odd chain tangle results in an infinite collection of odd polyhedral links. The relationship between the HOMFLY polynomials of these odd links and the $Q^{d}$ -polynomial of $G$ is established. It leads to the determination of the span of the HOMFLY polynomial, the bound on the braid index and the genus of each odd link. Our results show that these indices depend not only on the building blocks but also on the graph $G.$      

Towards a definition of almost–equienergetic graphs

The energy $E(G)$ of a graph $G$ , a quantity closely related to total $\pi $ -electron energy, is equal to the sum of absolute values of the eigenvalues of $G$ . Two graphs $G_a$ and $G_b$ are said to be equienergetic if $E(G_a)=E(G_b)$ . In 2009 it was discovered that there are pairs of graphs for which the difference $E(G_a)-E(G_b)$ is non-zero, but very small. Such pairs of graphs were referred to as almost equienergetic, but a precise criterion for almost–equienergeticity was not given. We now fill this gap.     

Lamellar/Disorder Phase Transition in a Mixture of Water/2,6-Dimethylpyridine/Antagonistic Salt

The effects of adding an antagonistic salt, sodium tetraphenylborate ( \(\hbox {NaBPh}_4\) ), to a binary mixture of deuterated water and 2,6-dimethylpyridine were investigated by visual inspection, optical microscopy, and small-angle neutron scattering. With increasing salt concentration, the two-phase region shrinks. When the concentration of \(\hbox {NaBPh}_4\) is \(85\hbox { mmol}{\cdot} \hbox {L}^{-1}\) , a temperature-induced lamellar/disorder phase transition is observed at 338 K. These trends are similar to those observed for a mixture of water/3-methylpyridine/ \(\hbox {NaBPh}_4\) (Sadakane et al., Phys. Rev. Lett. 103, 167803 (2009)).     

The principal measure and distributional (p, q)-chaos of a coupled lattice system with coupling constant \varepsilon =1 related with Belusov–Zhabotinskii reaction

We consider the following system coming from a lattice dynamical system stated by Kaneko (Phys Rev Lett, 65:1391–1394, 1990) which is related to the Belusov–Zhabotinskii reaction: $$\begin{aligned} x_{n}^{m+1}=(1-\varepsilon )f\left( x_{n}^{m}\right) +\frac{1}{2}\varepsilon \left[ f(x_{n-1}^{m})+f\left( x_{n+1}^{m}\right) \right] , \end{aligned}$$ where $m$ is discrete time index, $n$ is lattice side index with system size $L$ (i.e., $n=1, 2, \ldots , L$ ), $\varepsilon \ge 0$ is coupling constant, and $f(x)$ is the unimodal map on $I$ (i.e., $f(0)=f(1)=0$ , and $f$ has unique critical point $c$ with $0<c<1$ and $f(c)=1$ ). In this paper, we prove that for coupling constant $\varepsilon =1$ , this CML (Coupled Map Lattice) system is distributionally $(p, q)$ -chaotic for any $p, q\in [0, 1]$ with $p\le q$ , and that its principal measure is not less than $\mu _{p}(f)$ . Consequently, the principal measure of this system is not less than $\frac{2}{3}+\sum _{n=2}^{\infty }\frac{1}{n}\frac{2^{n-1}}{(2^{n}+1) (2^{n-1}+1)}$ for coupling constant $\varepsilon =1$ and the tent map $\Lambda $ defined by $\Lambda (x)=1-|1-2x|, x\in [0, 1]$ . So, our results complement the results of Wu and Zhu (J Math Chem, 50:2439–2445, 2012).     

A new approach to maturity of molecules by rationality of finite groups

These two concepts, maturity in chemistry and rationality in group theory were discovered by a chemist, Fujita. In the present study, we introduce a new approach to maturity and immaturity of simple groups, using the deep theorem (Feit and Seitz in Ill J Math 33:101–131, 1988). Additionally, we prove that 1,3,5-trimethyl-2,4,6-trinitrobenzene are always unmatured and tetra platinum(II) with point group $D_{2n}$ , dihedral group of order $2n$ , is unmatured if $n\ne 1,2,3,4,6$ . Also, we compute integer-valued characters of the simple sporadic group $Ly$ .     

A new scaled crossover parametric equation of state for water

In the present work, the asymmetric nature of water coexistence curve has been studied by investigating a new scaled crossover parametric equation of state. To do so, the concept of complete scaling [Fisher and Orkoulas, Phys Rev Lett 696, 85 (2000)] has been applied and the critical amplitudes near and far from the critical point have been derived. Also two mixing parameters $ a_{3} $ and $ b_{2} $ in the definition of scaling fields in terms of physical fields have been obtained for water. We have shown that mixing of the complete scaling theory and parametric equation of state can explain this nature quite carefully.     

A note on the principal measure and distributional ({\varvec{p, q}})-chaos of a coupled lattice system related with Belusov–Zhabotinskii reaction

García Guirao and Lampart in (J Math Chem 48:159–164, 2010) presented a lattice dynamical system stated by Kaneko in (Phys Rev Lett 65:1391–1394, 1990) which is related to the Belusov–Zhabotinskii reaction. In this paper, we prove that for any non-zero coupling constant $\varepsilon \in (0, 1)$ , this coupled map lattice system is distributionally $(p, q)$ -chaotic for any pair $0\le p\le q\le 1$ , and that its principal measure is not less than $(1-\varepsilon )\mu _{p}(f)$ . Consequently, the principal measure of this system is not less than $$\begin{aligned} (1-\varepsilon )\left( \frac{2}{3}+\sum \limits _{n=2}^{\infty }\frac{1}{n}\frac{2^{n-1}}{(2^{n}+1) (2^{n-1}+1)}\right) \end{aligned}$$ for any non-zero coupling constant $\varepsilon \in (0, 1)$ and the tent map $\Lambda $ defined by $$\begin{aligned} \Lambda (x)=1-|1-2x|,\quad x\in [0, 1]. \end{aligned}$$      

Li–Yorke chaos in a coupled lattice system related with Belusov–Zhabotinskii reaction

Garca Guirao and Lampart (J Math Chem 48:66–71, 2010; J Math Chem 48:159–164, 2010) said that for non-zero couplings constant, the lattice dynamical system is more complicated. Motivated by this, in this paper, we prove that this coupled map lattice system is Li–Yorke chaotic for coupling constant ${0 < \epsilon <1 }$ .     

Clar and Fries numbers for benzenoids

A Kekulé structure of a benzenoid or a fullerene $\Gamma $ Γ is a set of edges $K$ K such that each vertex of $\Gamma $ Γ is incident with exactly one edge in $K$ K . The set of faces in $\Gamma $ Γ that have exactly three edges in $K$ K are called the benzene faces of $K$ K . The Fries number of $\Gamma $ Γ is the maximum number of benzene faces over all possible Kekulé structures for $\Gamma $ Γ . The Clar number is the maximum number of independent benzene faces over all possible Kekulé structures for $\Gamma $ Γ . It is often assumed, but never proved, that some set of independent benzene faces giving the Clar number is a subset of a set of benzene faces giving the Fries number. In Hartung (The Clar structure of fullerenes, Ph.D. Dissertation. Syracuse University, 2012) it is shown that this assumption is false for a large class of fullerenes. In this paper, we prove that this assumption is valid for a large a class of benzenoids.     

Symmetry-itemized enumeration of quadruplets of RS-stereoisomers. II. The partial-cycle-index method of the USCI approach combined with the stereoisogram approach

The symmetry-itemized enumeration of quadruplets of stereoisograms is discussed by starting from a tetrahedral skeleton, where the partial-cycle-index (PCI) method of the unit-subduced-cycle-index approach (Fujita in Symmetry and combinatorial enumeration of chemistry. Springer, Berlin, 1991) is combined with the stereoisogram approach (Fujita in J Org Chem 69:3158–3165, 2004, Tetrahedron 60:11629–11638, 2004). Such a tetrahedral skeleton as contained in the quadruplet of a stereoisogram belongs to an RS-stereoisomeric group denoted by $\mathbf{T}_{d\widetilde{\sigma }\widehat{I}}$ , where the four positions of the tetrahedral skeleton accommodate achiral and chiral proligands to give quadruplets belonging to subgroups of $\mathbf{T}_{d\widetilde{\sigma }\widehat{I}}$ according to the stereoisogram approach. The numbers of quadruplets are calculated as generating functions by applying the PCI method. They are itemized in terms of subgroups of $\mathbf{T}_{d\widetilde{\sigma }\widehat{I}}$ , which are further categorized into five types. Quadruples for stereoisograms of types I–V are ascribed to subgroups of $\mathbf{T}_{d\widetilde{\sigma }\widehat{I}}$ , where their features are discussed in comparison between RS-stereoisomeric groups and point groups.     

A note on Li–Yorke chaos in a coupled lattice system related with Belusov–Zhabotinskii reaction

This paper is concerned with the following system which comes from a lattice dynamical system stated by Kaneko in (Phys Rev Lett 65:1391–1394, 1990) and is related to the Belusov–Zhabotinskii reaction: $$\begin{aligned} x_{n}^{m+1}=(1-\varepsilon )f(x_{n}^{m})+\frac{1}{2}\varepsilon \left[ f(x_{n-1}^{m})+f(x_{n+1}^{m})\right] , \end{aligned}$$ x n m + 1 = ( 1 ? ε ) f ( x n m ) + 1 2 ε [ f ( x n ? 1 m ) + f ( x n + 1 m ) ] , where $m$ m is discrete time index, $n$ n is lattice side index with system size $L$ L (i.e., $n=1, 2, \ldots , L$ n = 1 , 2 , … , L ), $\varepsilon $ ε is coupling constant, and $f(x)$ f ( x ) is the unimodal map on $I$ I (i.e., $f(0)=f(1)=0$ f ( 0 ) = f ( 1 ) = 0 and $f$ f has unique critical point $c$ c with $0<c<1$ 0 < c < 1 and $f(c)=1$ f ( c ) = 1 ). It is proved that for coupling constant $\varepsilon =1$ ε = 1 , this CML (Coupled Map Lattice) system is chaotic in the sense of Li–Yorke for each unimodal selfmap on the interval $I=[0, 1]$ I = [ 0 , 1 ] .     

The principal measure and distributional (p, q)-chaos of a coupled lattice system related with Belusov–Zhabotinskii reaction

García Guirao and Lampart (J Math Chem 48:66–71, 2010; J Math Chem 2 48:159–164, 2010) said that for non-zero couplings constant, the lattice dynamical system is more complicated. Motivated by this, in this paper, we prove that this coupled lattice system is distributionally (p, q)-chaotic for any pair 0?≤ p?≤ q?≤ 1 and its principal measure is not less than ${\frac{2}{3} + \sum_{n=2}^{\infty} \frac{1}{n} \frac{2^{n-1}}{(2^{n}+1)(2^{n-1}+1)}}$ for coupling constant ${0 < \epsilon < 1}$ .     

Symmetry-itemized enumeration of RS-stereoisomers of allenes. I. The fixed-point matrix method of the USCI approach combined with the stereoisogram approach

After the RS-stereoisomeric group \(\mathbf{D}_{2d\widetilde{\sigma }\widehat{I}}\) of order 16 has been defined by starting point group \(\mathbf{D}_{2d}\) of order 8, the isomorphism between \(\mathbf{D}_{2d\widetilde{\sigma }\widehat{I}}\) and the point group \(\mathbf{D}_{4h}\) of order 16 is thoroughly discussed. The non-redundant set of subgroups (SSG) of \(\mathbf{D}_{2d\widetilde{\sigma }\widehat{I}}\) is obtained by referring to the non-redundant set of subgroups of \(\mathbf{D}_{4h}\) . The coset representation for characterizing the orbit of the four positions of an allene skeleton is clarified to be \(\mathbf{D}_{2d\widetilde{\sigma }\widehat{I}}(/\mathbf{C}_{s\widetilde{\sigma }\widehat{I}})\) , which is closely related to the \(\mathbf{D}_{4h}(/\mathbf{C}_{2v}^{\prime \prime \prime })\) . According to the unit-subduced-cycle-index (USCI) approach (Fujita, Symmetry and combinatorial enumeration of chemistry. Springer, Berlin 1991), the subduction of \(\mathbf{D}_{2d\widetilde{\sigma }\widehat{I}}(/\mathbf{C}_{s\widetilde{\sigma }\widehat{I}})\) is examined so as to generate unit subduced cycle indices with chirality fittingness (USCI-CFs). Then, the fixed-point matrix method of the USCI approach is applied to the USCI-CFs. Thereby, the numbers of quadruplets are calculated in an itemized fashion with respect to the subgroups of \(\mathbf{D}_{2d\widetilde{\sigma }\widehat{I}}\) . After the subgroups of \(\mathbf{D}_{2d\widetilde{\sigma }\widehat{I}}\) are categorized into types I–V, type-itemized enumeration of quadruplets is conducted to illustrate the versatility of the stereoisogram approach.     

A proposed family of variationally correlated first-order density matrices for spin-polarized three-electron model atoms

In early work of March and Young (Phil Mag 4:384, 1959), it was pointed out for spin-free fermions that a first-order density matrix (1DM) for $N-1$ particles could be constructed from a 2DM ( $\Gamma $ ) for $N$ fermions divided by the diagonal of the 1DM, the density $n(\mathbf{r}_1)$ , as $2\Gamma (\mathbf{r}_1,\mathbf{r}^{\prime }_2;\mathbf{r}_1,\mathbf{r}_2)/n(\mathbf{r}_1)$ for any arbitrary fixed $\mathbf{r}_1$ . Here, we thereby set up a family of variationally valid 1DMS constructed via the above proposal, from an exact 2DM we have recently obtained for four electrons in a quintet state without confining potential, but with pairwise interparticle interactions which are harmonic. As an indication of the utility of this proposal, we apply it first to the two-electron (but spin-compensated) Moshinsky atom, for which the exact 1DM can be calculated. Then the 1DM is found for spin-polarized three-electron model atoms. The equation of motion of this correlated 1DM is exhibited and discussed, together with the correlated kinetic energy density, which is shown explicitly to be determined by the electron density.     

A boundary-driven reaction front

A model reaction scheme in which two species $A$ and $B$ react to form an inert product is considered, with the possible linear decay of $A$ to a further inert prduct also included. The reaction between $A$ and $B$ is maintained by the input of $A$ from the boundary which keeps $A$ at a constant concentration. The cases when $B$ is immobile or free to diffuse are treated. In the former case reaction fronts in $B$ are seen to develop. Large time asymptotic solutions are derived which show that these fronts propagate across the reactor at rates proportional to $t^{1/2}$ or $\log t$ ( $t$ is a dimensionless time) depending on whether the extra decay step is included. A similar situation is seen when $B$ can diffuse when the linear decay step is not present. However, when this extra step is included in the reaction scheme the reaction zone reaches only a finite distance fronm the boundary at large times.     

On k-resonance of grid graphs on the plane,torus and cylinder

Grid graphs on the plane, torus and cylinder are finite 2-connected bipartite graphs embedded on the plane, torus and cylinder, respectively, whose every interior face is bounded by a quadrangle. Let \(k\) be a positive integer, a grid graph is \(k\) -resonant if the deletion of any \(i \le k\) vertex-disjoint quadrangles from \(G\) results in a graph either having a perfect matching or being empty. If \(G\) is \(k\) -resonant for any integer \(k \ge 1\) , then it is called maximally resonant. In this study, we provide a complete characterization for the \(k\) -resonance of grid graphs \(P_m\times P_n\) on plane, \(C_m\times C_n\) on torus and \(P_m\times C_n\) on cylinder.     

Reflections on the conformation, topology and thermodynamics of a polyelectrolyte chain in the presence of counterions with plausible applications

The simulation results from a basic polyelectrolyte chain consisting of an anionic string of 150 univalent negatively charged particles connected under various harmonic-like potential interactions with each other in the presence of a similar number of positive and free counter ions found in Jesudason et al. (EPJE $30$ 30 :341–350, 2009) forms the focal point for further discussion on chain models based on a survey of more recent developments in general polyelectrolyte theory. The topics discussed include persistence length definition, forcefields and methods of controlling simulation parameters, and thermodynamics. The data for the basic system was derived for the temperature range $0.1$ 0.1 – $10.0$ 10.0 in reduced units (corresponding to $\xi =10\text{-- }0.1$ ξ = 10 -- 0.1 ); the augmented data involves a $360$ 360 monomer chain. The data include the total and Coulombic energies, radial distribution functions, radii of gyration, end-to-end distances and snapshots of the system which are all discussed anew. Polyelectrolyte systems have been overwhelmingly associated with biophysical interpretations, but here it is suggested that these detailed studies and the consequent theoretical formulations could be extended further afield; non-biological ionic liquid systems with catalytic and energy storage applications are some of many other possibilities. However, the approach used by MD simulations to validate ionic liquid systems as carriers of molecules with catalytic moieties often refer to CPMD and DFT quantum methods, which is not the current norm as judged by the literature in especially coarse grained polyelectrolyte MD. The quantum approach could also be used for more detailed analysis of biophysical systems where one trend seems to be that the incorporation of details in simulations accounts for phenomena not explicable in coarser grained MD, for instance if conventional atomic ionic charges are assigned to all atom modeling. This is illustrated by a linear chain modeling a DNA polymer using different charge and size assignments for the same linear charge density. The trends are such that it might be expected that some form of routine standardization of force fields in the spirit of the Jorgensen OPLS-AA method that incorporates quantum calculations specific to a system will be implemented as a routine as refinements are seen to lead to more comprehensive rationalization.     

Symmetry-itemized enumeration of quadruplets of RS-stereoisomers: I—the fixed-point matrix method of the USCI approach combined with the stereoisogram approach

The RS-stereoisomeric group $\mathbf{T}_{d\widetilde{\sigma }\widehat{I}}$ is examined to characterize quadruplets of RS-stereoisomers based on a tetrahedral skeleton and found to be isomorphic to the point group $\mathbf{O}_{h}$ of order 48. The non-redundant set of subgroups (SSG) of $\mathbf{T}_{d\widetilde{\sigma }\widehat{I}}$ is obtained by referring to the non-redundant SSG of $\mathbf{O}_{h}$ . The coset representation for characterizing the orbit of the four positions of the tetrahedral skeleton is clarified to be $\mathbf{T}_{d\widetilde{\sigma }\widehat{I}}(/\mathbf{C}_{3v\widetilde{\sigma }\widehat{I}})$ , which is closely related to the $\mathbf{O}_{h}(/\mathbf{D}_{3d})$ . According to the unit-subduced-cycle-index (USCI) approach (Fujita in Symmetry and combinatorial enumeration in chemistry. Springer, Berlin, 1991), the subdution of $\mathbf{T}_{d\widetilde{\sigma }\widehat{I}}(/\mathbf{C}_{3v\widetilde{\sigma }\widehat{I}})$ is examined so as to generate unit subduced cycle indices with chirality fittingness (USCI-CFs). The fixed-point matrix method of the USCI approach is applied to the USCI-CFs. Thereby, the numbers of quadruplets are calculated in an itemized fashion with respect to the subgroups of $\mathbf{T}_{d\widetilde{\sigma }\widehat{I}}$ . After the subgroups of $\mathbf{T}_{d\widetilde{\sigma }\widehat{I}}$ are categorized into types I–V, type-itemized enumeration of quadruplets is conducted to illustrate the versatility of the stereoisogram approach.