Influence of N-amino protecting group on aldolase-catalyzed aldol additions of dihydroxyacetone phosphate to amino aldehydes

This work examines the influence of N-protecting groups on the conversion and stereoselectivity of dihydroxyacetone phosphate (DHAP) dependent aldolase-catalyzed aldol additions of DHAP to N-protected-3-aminopropanal. Phenylacetyl-(PhAc-), tert-butyloxycarbonyl- (^tBoc-) and fluoren-9-ylmethoxycarbonyl- (Fmoc-)-3-aminopropanal were evaluated as substrates for d-fructose 1,6-bisphosphate aldolase from rabbit muscle (RAMA), and l-rhamnulose-1-phosphate aldolase (RhuA) and l-fuculose-1-phosphate aldolase (FucA), both from Escherichia coli. Using PhAc and ^tBoc ca. 70% conversions to the aldol adduct were achieved, whereas Fmoc gave maximum conversions of ca. 25%. The stereoselectivity of the DHAP-aldolases did not depend on the N-protected-3-aminopropanal derivative. Moreover, inversion of FucA stereoselectivity relative to that obtained with the natural l-lactaldehyde was observed. Both N-PhAc and ^tBoc adduct product derivatives were successfully deprotected by penicillin G acylase (PGA)-catalyzed hydrolysis at pH 7 and by treatment with aqueous TFA (6% v/v), respectively. However, the corresponding cyclic imine sugars could not be isolated, presumable due to the presence of a highly reactive primary amine and a keto group in the molecule, which lead to a number of unexpected reactions.     

Preparation, spectroscopic properties of 1,4-di (N,N-diisopropylacetamido)-2,3(1H,4H)-quinoxalinedione (L) lanthanide complexes and the supramolecular structure of [Nd2L2(NO3)6(H2O)2]·H2O

The reaction of lanthanide nitrate with 1,4-di (N,N-diisopropylacetamido)-2,3(1H,4H)-quinoxalinedione (L) yields six novel Ln(III) complexes ([Ln₂L₂(NO₃)₆(H₂O)₂]·H₂O) which are characterized by elemental analysis, thermogravimetric analysis (TGA), conductivity measurements, IR, electronic and ¹H NMR spectroscopies. A new quinoxalinedione-based ligand is used as antenna ligand to sensitize the emission of lanthanide cations. The lowest triplet state energy level of the ligand in the nitrate complex matches better to the resonance level of Eu(III) and Sm(III) than Tb(III) and Dy(III) ion. The f-f fluorescence is induced in the Eu³⁺ and Sm³⁺ complexes by exciting into the π-π* absorptions of the ligand in the UV. Furthermore, the crystal structures of a novel binuclear complex [Nd₂L₂(NO₃)₆(H₂O)₂]·H₂O has been determined by single-crystal X-ray diffraction. The binuclear [Nd₂L₂(NO₃)₆(H₂O)₂]·H₂O complex units are linked by the intermolecular hydrogen bonds and π-π interactions to form a two-dimensional (2-D) layer supramolecule.     

A carbamoyl-protective group for tyrosine that facilitates purification of hydrophobic synthetic peptides

The Boc-N-methyl-N-[2-(methylamino)ethyl]carbamoyl group (Boc-Nmec) is reported as a new side chain-protective group for tyrosine in Fmoc solid-phase peptide synthesis. Tyrosine is incorporated into the peptide as Fmoc-Tyr(Boc-Nmec)-OH by standard coupling methods. During the cleavage of the peptide from the resin with TFA the Boc group is simultaneously cleaved while the cationic N-methyl-N-[2-(methylamino)ethyl]carbamoyl group remains attached to the tyrosine residue, thereby increasing the solubility of the peptide. After purification of the peptide, the Nmec protective group can be cleaved under neutral or mild alkaline conditions via an intramolecular cyclization reaction.     

Pyruvoyl, a novel amino protecting group on the solid phase peptide synthesis and the peptide condensation reaction

In one of the peptide condensation methods termed thioester method, an amino protecting group is required in the lysine side chain. In this study, to investigate the efficiency of the pyruvoyl group as an amino protecting group, we synthesized N^α-fluorenylmethoxycarbonyl (Fmoc)-N^ε-pyruvoyl-lysine and introduced it into peptides and glycopeptides by the ordinary Fmoc-based solid phase peptide synthesis. The pyruvoyl peptide could be condensed with a peptide thioester by the thioester method, and this protecting group was easily removed by o-phenylenediamine treatment without significant side reactions.     

Enantiomer separation of rac-2,2′-dihydroxy-1,1′-binaphthyl (BNO) by inclusion complexation with racemic or achiral ammonium salts and a novel transformation of a 1:1:1 racemic complex of BNO, Me4N·Cl and MeOH into a conglomerate complex in the solid state

The complete simultaneous and mutual enantiomer resolution of 2,2′-dihydroxy-1,1′-binaphthyl (BNO) and N-(3-chloro-2-hydroxypropyl)-N,N,N-trimethylammonium chloride, Me₃N⁺CH₂CH(OH)CH₂Cl·Cl⁻ into their enantiomers by inclusion complexation between their racemates in EtOH in the presence of a chiral seed crystal is reported. The enantiomer resolution of the rac-BNO was also accomplished easily by inclusion complexation with achiral ammonium salts, N-(2-hydroxyethyl)-N,N,N-trimethylammonium chloride, Me₃N⁺CH₂CH₂OH·Cl⁻ and tetramethylammonium chloride, Me₄N⁺·Cl⁻. Inclusion complexation of the rac-BNO with Me₃N⁺ CH₂CH₂OH·Cl⁻ gave only a 1:1 conglomerate inclusion complex but not a racemic complex. Recrystallization of the rac-BNO and an equimolar amount of Me₄N⁺·Cl⁻ from MeOH (7 ml) and MeOH (15 ml) gave a 1:1:1 racemic complex, BNO·Me₄N⁺·Cl⁻·MeOH and a 1:1 conglomerate complex, BNO·Me₄N⁺·Cl⁻, respectively. Novel transformation of the former racemate into the latter conglomerate occurred by heating or by exposure to MeOH vapor in the solid state.     

Synthesis, crystal structure and spectroscopy studies of a novel five-coordinated Zn(II) ion complex with l-tyrosine and imidazole

The new five-coordination zinc(II) complex of formula [Zn(Im)(l-tyr)₂]₂·5H₂O consisting of l-tyrosine (l-tyr) and imidazole (Im) molecules as ligands was prepared as crystals and characterized by X-ray diffraction, IR-FIR vibrational and UV-Vis electronic spectroscopy. The [Zn(Im)(l-tyr)₂]₂·5H₂O complex crystallizes in the orthorhombic crystal system and P2₁2₁2 space group. The [ZnN₂N′O₂] chromophore has distorted bipiramidal geometry with value of τ parameter 0.7. The sensitive intra and inter-molecular hydrogen bonds created the layers arrangement and the “pseudo-baskets” fashion. The intraligand charge transfer (ILCT) π-π^∗ and π-π^∗ transitions in the ligands molecule are corresponded to the intensity bands in the UV-Vis region.     

Total synthesis of cucurbitoside A using a novel fluorous protecting group

The first total synthesis of cucurbitoside A was achieved using a new fluorous N-phenylcarbamoyl (^FCar) protecting group. The ^FCar group was introduced into carbohydrates in high yield and was selectively removed with Bu₄NNO₂ without damaging other acyl protecting groups. The synthetic intermediates were easily isolated by fluorous solid-phase extraction.     

A new protecting group for tryptophan in solid-phase peptide synthesis which protects against acid-catalyzed side reactions and facilitates purification by HPLC

The indole nucleus of Z-Trp-OBzl is modified by acylation of the indole nitrogen using Boc-N-methyl butyric acid followed by catalytic hydrogenation and introduction of the Fmoc group. The resulting derivative, Fmoc-Trp(Boc-Nmbu)-OH, is incorporated into peptide chains via solid-phase peptide synthesis (SPPS). After assembly of the peptide chain, the Boc group is cleaved by treatment with TFA. The peptide is isolated with the tryptophan residue modified with a cationic 4-(N-methylamino) butanoyl group, which improves the solubility of the peptide during HPLC purification. On treatment of the purified peptide at pH 9.5, the Nmbu group undergoes an intramolecular cyclization reaction; this results in the fully deprotected peptide and N-methylpyrrolidone.     

Synthesis,experimental and in silico studies of N‐fluorenylmethoxycarbonyl‐O‐tert‐butyl‐N‐methyltyrosine,coupled with CSD data: a survey of interactions in the crystal structures of Fmoc–amino acids

Recently, fluorenylmethoxycarbonyl (Fmoc) amino acids (e.g. Fmoc–tyrosine or Fmoc–phenylalanine) have attracted growing interest in biomedical research and industry, with special emphasis directed towards the design and development of novel effective hydrogelators, biomaterials or therapeutics. With this in mind, a systematic knowledge of the structural and supramolecular features in recognition of those properties is essential. This work is the first comprehensive summary of noncovalent interactions combined with a library of supramolecular synthon patterns in all crystal structures of amino acids with the Fmoc moiety reported so far. Moreover, a new Fmoc‐protected amino acid, namely, 2‐{[(9H‐fluoren‐9‐ylmethoxy)carbonyl](methyl)amino}‐3‐{4‐[(2‐hydroxypropan‐2‐yl)oxy]phenyl}propanoic acid or N‐fluorenylmethoxycarbonyl‐O‐tert‐butyl‐N‐methyltyrosine, Fmoc‐N‐Me‐Tyr(t‐Bu)‐OH, C₂₉H₃₁NO₅, was successfully synthesized and the structure of its unsolvated form was determined by single‐crystal X‐ray diffraction. The structural, conformational and energy landscape was investigated in detail by combined experimental and in silico approaches, and further compared to N‐Fmoc‐phenylalanine [Draper et al. (2015). CrystEngComm, 42 , 8047–8057]. Geometries were optimized by the density functional theory (DFT) method either in vacuo or in solutio. The polarizable conductor calculation model was exploited for the evaluation of the hydration effect. Hirshfeld surface analysis revealed that H…H, C…H/H…C and O…H/H…O interactions constitute the major contributions to the total Hirshfeld surface area in all the investigated systems. The molecular electrostatic potentials mapped over the surfaces identified the electrostatic complementarities in the crystal packing. The prediction of weak hydrogen‐bonded patterns via Full Interaction Maps was computed. Supramolecular motifs formed via C—H…O, C—H…π, (fluorenyl)C—H…Cl(I), C—Br…π(fluorenyl) and C—I…π(fluorenyl) interactions are observed. Basic synthons, in combination with the Long‐Range Synthon Aufbau Modules, further supported by energy‐framework calculations, are discussed. Furthermore, the relevance of Fmoc‐based supramolecular hydrogen‐bonding patterns in biocomplexes are emphasized, for the first time.     

Synthesis of N′-substituted Ddz-protected hydrazines and their application in solid phase synthesis of aza-peptides

Hydrazine derivatives are of considerable scientific and industrial value. Substituted hydrazines are precursors for many compounds of great interest and importance, among them aza-peptides. (Aza-peptides are peptide analogues in which one or more of the α-carbons, bearing the side chain residues, has been replaced by a nitrogen atom.) Aza-amino acid residues conserve the pharmacophores necessary for biological activity while inducing conformational changes and increased resistance to proteolytic degradation. These properties make aza-peptides attractive tools for structure-activity relationship studies and drug design. We describe the synthesis of N′-substituted 2-(3,5-dimethoxyphenyl)propan-2-yloxycarbonyl (Ddz) protected hydrazines. A general approach for solid phase synthesis of aza-peptides has been developed based on the in-situ activation of the N-Ddz,N′-substituted hydrazines with phosgene, followed by introduction to the N-terminus of a resin-bound peptide. The Ddz-aza-amino building units include aliphatic, aromatic and functionalized side chains, protected for synthesis by the Fmoc strategy. Solid phase aza-peptide synthesis is demonstrated including selective mild deprotection of Ddz with Mg(ClO₄)₂ and coupling of the next amino acid with triphosgene. Ddz deprotection is orthogonal with the Fmoc and Boc protecting groups, making the solid phase Ddz-aza-peptide synthesis compatible with both the Fmoc and the Boc strategies. The Ddz-protected hydrazines have wide applications in the synthesis of substituted hydrazines and in the synthesis of aza containing peptidomimetics.     

Synthesis and structural characterization of metal complexes based on pyrazole/imidazolium chlorides

A series of imidzoalium salt, L · HCl, for the potentially bidentate pyrazole/N-heterocyclic carbene was synthesized. Reactions of a 2:1 mixture between L · HCl bearing bulky N-substitution and Ag₂O produced Ag(L)Cl, whereas a novel compound with unique stoichiometry AgL₂(AgCl)_0.5Cl was produced from L · HCl bearing N-methyl group under identical condition. Reactions of L · HCl with PdCl₂ produced zwitterionic Pd^IICl₃L · H. Selected structural determinations on L · HCl, Ag(L)Cl, AgL₂(AgCl)_0.5Cl, and Pd^IICl₃L · H revealed intriguing crystal chemistry in which the less-stable gauche rotamers were obtained exclusively. A preliminary application of the zwitterionic complexes, Pd^IICl₃L · H, in Heck coupling reaction of aryl bromide with n-butyl acrylate shows effective activity.     

Preparation of (S,S)‐Fmoc‐β2hIle‐OH, (S)‐Fmoc‐β2hMet‐OH,and (S)‐Fmoc‐β2hTyr(tBu)‐OH for Solid‐Phase Syntheses of β2‐ and β2/β3‐Peptides

The preparation of three new N‐Fmoc‐protected (Fmoc=[(9H‐fluoren‐9‐yl)methoxy]carbonyl) β²‐homoamino acids with proteinogenic side chains (from Ile, Tyr, and Met) is described, the key step being a diastereoselective amidomethylation of the corresponding Ti‐enolates of 3‐acyl‐4‐isopropyl‐5,5‐diphenyloxazolidin‐2‐ones with CbzNHCH₂OMe/TiCl₄ (Cbz=(benzyloxy)carbonyl) in yields of 60–70% and with diastereoselectivities of >90%. Removal of the chiral auxiliary with LiOH or NaOH gives the N‐Cbz‐protected β‐amino acids, which were subjected to an N‐Cbz/N‐Fmoc (Fmoc=[(9H‐fluoren‐9‐yl)methoxy]carbonyl) protective‐group exchange. The method is suitable for large‐scale preparation of Fmoc‐β²hXaa‐OH for solid‐phase syntheses of β‐peptides. The Fmoc‐amino acids and all compounds leading to them have been fully characterized by melting points, optical rotations, IR, ¹H‐ and ¹³C‐NMR, and mass spectra, as well as by elemental analyses.     

Cobalt complexes of a selenium diimide and a tellurium diimide dimer

[CoCl₂{N,N′-Te₂(N^tBu)₄}] (1) was obtained in good yields by the reaction of equimolar amounts of (^tBu)NTe(μ-N^tBu)₂TeN(^tBu) and CoCl₂ in toluene under an argon atmosphere. The crystal structure of 1·CH₂Cl₂ showed that the dimeric tellurium diimide ligand is N,N′-chelated to cobalt. The related reaction of Se(N^tBu)₂ and CoCl₂ affords a green product tentatively identified as a 1:1 adduct [CoCl₂{N,N′-Se(N^tBu)₂}] (CHN analysis). However, recrystallization from thf produces the ion-separated complex [Co₂(μ-Cl)₃{N,N′-Se(N^tBu)₂}₂(thf)₂][CoCl₃{NH₂(^tBu)}]·1½thf (2·1½thf), in which the monomeric selenium diimide ligand is N,N′-chelated to cobalt in the cation. A pathway for the formation of 2 from [CoCl₂{N,N′-Se(N^tBu)₂}] in thf is proposed.     

High resolution NMR studies of allylic derivatives of group IVB elements

The high resolution NMR spectra of certain Group IVB allyl compounds, FC₃M(CH₂)_nCHCH₂R′ (where R = Me, Et, Ph; R′ = H, Ph; M = Sn, Si, Ge; n = 1 or 2), have been studied in an attempt to detect manifestations of ground state p_πd_π overlap. Analyses, using sub-spectral techniques for ABMX₂ and ABX₂ systems, were confirmed using computer iteration methods. The emphasis has been placed here on the sensitivity of the coupling constants of the allyl group towards anticipated steric and electronic perturbation or towards the interaction between the Group IVB atom d orbitals and the olefinic p_π orbitals. Some ¹¹⁹Sn chemical shifts have also been recorded. The conclusions reached do not support the existence of ground state d_πp_π overlap in these compounds.     

1D coordination polymers of silver(I) and copper(II) based on bis(N-heterocyclic carbene) ligands: Synthesis and structural studies

The alkyl chain-linked diimidazolium (or dibenzimidazolium) salts, 1,1′-diethyl-4,4′-tetramethylene-diimidazolium-diiodide (L¹H₂·I₂) and 1,1′-diethyl-3,3′-trimethylene-dibenzimidazolium-diiodide (L²H₂·I₂), and their silver(I) and copper(II) coordination polymers, [L¹AgI]_n (1) and [L²Cu₂I₄]_n (2), have been prepared and characterized. Complex 1 is a 1D helical polymer generated by bidentated carbene ligands (L¹) and Ag(I) atoms. The 1D polymer of 2 is formed by bidentated carbene ligands (L²) and coplanar quadrilateral Cu₂I₂ units. 3D supramolecular frameworks in the crystal packings of 1 and 2 are formed via intermolecular weak interactions, including C–H···π contacts, π–π interactions and C–H···I hydrogen bonds.     

Novel fluorescent amphiphilic poly(allylamine) and their supramacromolecular self‐assemblies in aqueous media

Fluorescent amphiphilic polymers were produced by grafting different types and levels of hydrophobic pendant groups with intrinsic fluorescent properties (fluorenylmethoxy carbonyl (Fmoc), dimethylamino‐1‐naphthalenesulfonyl (Dansyl), and naphthalene (Naphth) to a water soluble homopolymer backbone, polyallylamine (PAA). Non‐fluorescent hydrophobic pendant group (cholesteryl moieties) were also grafted onto PAA. The polymers were characterized with elemental analysis, NMR and FTIR spectroscopy. All polymers formed self‐assemblies by probe sonication in water with sizes ranging from 120 to 199 nm and TEM images showed the presence of spherical particles. The critical aggregation concentration (CAC) varied from 0.093 to 1.5 mg ml^?1 depending on the type of hydrophobic pendant groups. The Cholesteryl and Dansyl polymers showed the presence of one CAC while the Fmoc and Naphth grafted polymers revealed the presence of two CACs. The first CAC observed was possibly due to intermolecular aggregation while the second CAC at the higher polymer concentration was the result of excimer formation revealed by their fluorescent spectra. We reasoned that Naphth and Fmoc aromatic pendant groups possess a flat stereochemistry, thus allowing π–π stacking at higher concentrations. The presence of the N‐dimethylamino group in the Dansyl moiety gives rise to a 3D structure, thus hindering any stacking. The understanding of the supramolecular assemblies formed by these fluorescent amphiphilic polymers will aid in the engineering of advanced materials with superior functionality for biomedical applications. Copyright © 2011 John Wiley & Sons, Ltd.     

Protection of histidine in peptide synthesis: A Reassessment of the trityl group

The trityl (Trt) group is ideally suited for the side-chain protection of His in peptide syntheses, in combination with 9-fluorenylmethyloxycarbonyl (Fmoc) in N^α- and protecting groups cleavable by mild acidolysis in other positions of the peptide. 2,4,5-trichlorophenyl (Tcp)- and pentafluorophenyl (Pfp)-esters of Fmoc-His(Trt)-OH and Trt-His(Trt)-OH are strongly activated, but stable compounds. N^α-Trt is selectively removable in the presence of N^Im-Trt.     

Effect of a carboxyl group on the chemiluminescent reaction of tris(2,2′-bipyridine)ruthenium(III) with aliphatic amines

The effect of a carboxyl group beside nitrogen of aliphatic amines on the tris(2,2′-bipyridine)ruthenium(III), Ru(bpy)₃³⁺, chemiluminescent reaction was examined. It has been shown that a carboxylate anion promotes the chemiluminescent reaction at a lower pH and then the aliphatic amines with this substituent can be sensitively detected compared with corresponding aliphatic amines without this substituent. Based on this finding, preliminary studies on simultaneous determination of 4-hydroxyproline, N-methylglycine, N-methylalanine, proline, and pipecolic acid in human serum have been performed using isocratic reversed-phase ion-pair high-performance liquid chromatography (HPLC) with electrogenerated Ru(bpy)₃³⁺ chemiluminescent detection. The detection limits (signal-to-noise ratio of 3) with the proposed method were 3.0, 12, 2.7, 4.6, and 10 nM for 4-hydroxyproline, N-methylglycine, N-methylalanine, proline, and pipecolic acid, respectively.     

Factor group splitting in the lowest triplet state of p-benzoquinone-d4 crystals

Polarized Stark-modulated Zeeman absorption experiments on p-benzoquinone-d₄ single crystals at 2 K show the factor group splitting in the origin of the lowest B_1g (nπ^*) triplet state at 18649 cm^?1 to be 0.62±0.06 cm^?1. The ordering of the crystal states is such that the orbital plus state lies at higher energy. The absence of a measurable factor group solitting in the ³A_u (nπ^*) state at 12.1 cm^?1 from the origin is taken as a further confirmation of the vibronic nature of this state. The ZFS parameter D of this level is found to be ?10±3 GHz.     

Coordination polymers with the chiral ligand N-p-tolylsulfonyl-l-glutamic acid: Influence of metal ions and different bipyridine ligands on structural chirality

Four new polymers, namely [Ni(-tsgluO)(2,4′-bipy)₂(H₂O)₂]_n·5nH₂O (1), [Co(-tsgluO)(2,4′-bipy)₂(H₂O)₂]_n·5nH₂O (2), [Ni(-tsgluO)(4,4′-bipy)]_n·0.5nH₂O (3), and [Co(-tsgluO)(4,4′-bipy)]_n·0.5nH₂O (4), where tsgluO²⁻=(+)-N-p-tolylsulfonyl-l-glutamate dianion, 2,4′-bipy=2,4′-bipyridine, and 4,4′-bipy=4,4'-bipyridine, have been prepared and structurally characterized. Compounds 1 and 2 are isostructural and mononuclear, and crystallize in the acentric monoclinic space group Cc, forming 1D chain structures. Compound 3 is also mononuclear, but crystallizes in the chiral space group P2₁, forming a homochiral 2D architecture. In contrast to the other complexes, compound 4 crystallizes in the space group P−1 and is composed of binuclear [Co₂O₆N₂]_n⁴⁻ units, which give rise to a 2D bilayer framework. Moreover, compounds 1, 2, and 4 self-assemble to form 3D supramolecular structures through π-π stacking and hydrogen-bonding interactions, while compound 3 is further hydrogen-bonded to form 3D frameworks. We have demonstrated the influence of the central metal and bipyridine ligands on the framework chirality of the coordination complexes.