The vibrational spectra,molecular structure and conformation of organic azides—IX. Azidoethane

A safe method for the synthesis of azidoethane from ethylbromide is given and ¹H and ¹³C NMR data are reported.The i.r. and Raman spectra of azidoethane have been recorded in the region 4000-40 cm⁻¹ and interpreted in terms of two conformers, anti and gauche, present in the vapour and in the liquid and of the gauche conformer in the crystalline solid. Matrix isolation studies reveal the gauche conformation to be the more stable in argon and in nitrogen matrices and probably also more stable in the vapour. The enthalpy difference between the conformers is calculated to be ΔH⁰_a→g (N₂ matrix) ≈ ΔH⁰_a→g (vap.) = −0.56(10) kJ mol⁻¹, and the barrier to rotational isomerism (anti → gauche) as 9.0(10) kJ mol⁻¹ in the nitrogen matrix and less than 6 kJ mol⁻¹ in the argon matrix. Careful Raman studies of the liquid at 140–290 K reveal the gauche conformation to be the more stable in the liquid phase as well, the enthalpy difference being ΔH⁰_a→g (liq.) = − 1.15 (5) kJ mol⁻¹.The majority of the fundamentals for both conformers have been assigned with the aid of normal coordinate calculations using previously developed scaled quantum mechanical force fields which are also presented.     

Cryochemistry : edited by M. Moskovits and G.A. Ozin,John Wiley & Sons,New York,London, Sydney and Toronto, 1976, pp. xi + 532, price £25.85

The IR spectra of N₂F₄ solutions in liquid argon and nitrogen have been recorded and reanalyzed in the 3300–3550 cm^?1 region. The fundamental absorption bands of NF-stretching modes of both the gauche and trans isomers and the bands of the second order transition have been observed. These new IR data on the spectra of cryosystems and published Raman data allowed us to make an unambiguous interpretation of the NF₂-stretching vibrational bands for both the N₂F₄ conformers.     

Far-IR spectrum,conformation stability,barriers to internal rotation,vibrational assignment,and ab initio calculations of 3-chloro-2-methylpropene

The far-IR spectrum from 375 to 30 cm⁻¹ of gaseous 3-chloro-2-methylpropene, CH₂=C(CH₃)CH₂Cl, has been recorded at a resolution of 0.10 cm⁻¹. The fundamental asymmetric torsional mode for the gauche conformer is observed at 84.3 cm⁻¹ with three excited states falling to lower frequency. For the higher energy s-cis conformer, where the chlorine atom eclipses the double bond, the asymmetric torsion is observed at 81.3 cm⁻¹ with two excited states falling to lower frequency. Utilizing the s-cis and gauche torsional frequencies, the gauche dihedral angle and the enthalpy difference between conformers, the potential function governing the interconversion of the rotamers has been calculated. The determined potential function coefficients are (in reciprocal centimeters): V₁=189±12, V₂=−358±11, V₃=886±2 and V₄=−12±2 with an enthalpy difference between the more stable gauche and s-cis conformers of 150 ±25 cm⁻¹ (430 ± 71 cal mol⁻¹). This function gives values of 661 cm⁻¹ (1.89 kcal mol⁻¹), 1226 cm⁻¹ (3.51 kcal mol⁻¹) and 812 cm⁻¹ (2.32 kcal mol⁻¹), for the s-cis to gauche, gauche to gauche, and gauche to s-cis barriers, respectively. From the methyl torsional frequency of 170 cm⁻¹ for the gauche conformer, the threefold barrier of 678 cm⁻¹ (1.94 kcal mol⁻¹) has been calculated. The asymmetric potential function, conformational energy difference and optimized geometries of both conformers have also been obtained from ab initio calculations with both the 3–21G^* and 6–31G^* basis sets. A normal-coordinate analysis has also been performed with a force field determined from the 3–21G^* basis set. These data are compared with the corresponding data for some similar molecules.     

The role of internal H-bonding in the conformational preferences of some molecules of the formula CH3CHYCH2X

The conformational energies of 1-amino-2-propanol, 2-amino-1-propanol and 1,2-diaminopropane are studied using ab initio molecular orbital theory employing minimal (STO-3G) and extended (4-31G) basis sets. Calculations at both levels of theory generally favor conformations stabilized by internal H-bonding for all molecules considered. Results are first presented for conformations employing assumed geometries. Since the conformational energy differences as found by the initial set of calculations are in some cases rather small it then becomes necessary to introduce geometry optimizations into the study at the minimal STO-3G level. In addition, to get a better estimate of the energy differences of the various conformations 4-31G calculations are performed on the STO-3G optimized structures. These latter results indicate the following, (a) For 1-amino-2-propanol only one conformation that is stabilized by intramolecular H-bonding is low in energy; this has the methyl and amino groups anti. The other H-bonded conformer, where the methyl and amino groups are gauche, is predicted to be ca. 1.2 kcal mol^?1 less stable. Similar findings for this molecule have recently been provided by micro-wave spectroscopy. (b) For 2-amino-1-propanol the two H-bonded conformers are only separated by about 0.5 kcal mol^?1, with the anti conformer being more stable. Micro-wave spectroscopy again supports these calculations. (c) For 1,2-diaminopropane the gauche conformer is predicted to be of rather high energy (ca. 2.5 kcal mol^?1) compared to the corresponding anti H-bonded conformer. The value of 2.5 kcal mol^?1should be taken as an upper limit, since the geometry optimization of the gauche conformer of 1,2-diaminopropane is incomplete compared to the optimization carried out for the anti conformer.     

Matrix isolation infrared and ab initio studies on conformers of 3-fluoropropene

The infrared spectra of the cis and gauche conformers of 3-fluoropropene, CH₂CHCH₂F, were studied in Ne, Ar, Kr and Xe matrices. An infrared-induced cis to gauche rotamerization was found in Ar, Kr and Xe matrices. A thermal interconversion process was also found. Its direction was dependent upon the host, being the same as that of the IR process in Kr but reverse in Ar and Xe. In Ar and Xe matrices considerable site-splitting occurs in the IR spectra and a detailed analysis of the processes in different sites is given. An energy difference of 2.5±0.3 kJ mol⁻¹ between the cis and gauche species was obtained on assuming that the gas phase equilibrium between the conformers is trapped upon deposition. A slow dark process from cis to gauche conformer was observed in Kr matrices at temperatures above 15 K, possibly due to tunnelling. Ab initio calculations were carried out on 3-fluoropropene. The torsional potential energy curve and spectra of the conformers were calculated at the MP2(full)16-31G** level and were compared with the experimental results.     

Infrared and Raman matrix isolation studies of methylamine

Infrared (4000-50 cm^?1) and Raman spectra are reported of methylamine, methylamine-d₁ and methylamine-d₂ trapped in argon and nitrogen matrices at 4–20 K. An anomalous intensity variation was found for the NH₂ wagging mode of methylamine isolated in nitrogen matrices, while in argon matrices the NH₂ wagging absorption exhibited a complex structure due to matrix site effects. A normal coordinate analysis was carried out using a new assignment of the NHD twisting frequency. Barriers to internal rotation in argon and nitrogen matrices, calculated from the observed torsional frequencies, are compared with the gas phase value.     

Photosonosynthesis of 1,2,4-tris(methylthio)-3-H-hexafluoro-n-butane

The preparation of neat 1,2,4-tris(methylthio)-3-H-hexafluoro-n-butane is described. The mechanism, which involves the elimination of hydrogen fluoride with the subsequent isomerization in forming the $\text{cis}$- and $\text{trans-}$ 1,2,4-tris(methylthio)hexafluoro-l-butene, is discussed. This study also supports the presence of methanethiol as an intermediate during the photosonoreaction of bis(methylthio)hexafluoro-2-butene with an excess of methyl disulfide.     

Trapping of unstable molecular conformations in argon matrices: Gauche- and trans-1,2-difluoroethane

Experiments are reported which describe the trapping of the unstable trans conformer of 1,2-difluoroethane in argon matrices. Assignments of the infrared spectra of the gauche and trans conformers are given. The latter is shown to have a 600 cal/mol higher free enthalpy.     

The Gauche Effect in XCH2CH2X Revisited

We have quantum chemically investigated the rotational isomerism of 1,2-dihaloethanes XCH₂CH₂X (X = F, Cl, Br, I) at ZORA-BP86-D3(BJ)/QZ4P. Our Kohn-Sham molecular orbital (KS-MO) analyses reveal that hyperconjugative orbital interactions favor the gauche conformation in all cases (X = F−I), not only for X = F as in the current model of this so-called gauche effect. We show that, instead, it is the interplay of hyperconjugation with Pauli repulsion between lone-pair-type orbitals on the halogen substituents that constitutes the causal mechanism for the gauche effect. Thus, only in the case of the relatively small fluorine atoms, steric Pauli repulsion is too weak to overrule the gauche preference of the hyperconjugative orbital interactions. For the larger halogens, X⋅⋅⋅X steric Pauli repulsion becomes sufficiently destabilizing to shift the energetic preference from gauche to anti, despite the opposite preference of hyperconjugation.     

Far infrared and low frequency gas phase Raman spectra,vibrational assignment,and conformational stability of 1-chloro-2-methylpropane and 1-bromo-2-methylpropane

The Raman (3200—10cm⁻¹) and infrared (3200—50 cm⁻¹) spectra of gaseous and solid 1-chloro-2-methylpropane and 1-bromo-methylpropane, as well as the Raman spectra of the liquids, have been recorded and assigned. The gauche asymmetric torsion of the 1-chloro-2-methylpropane molecules has been observed at 110 cm⁻¹ in the Raman spectrum of the gas. For the 1-bromo-2-methylpropane molecule, both the trans and gauche asymmetric torsions have been observed at 106.70 and 103.94 cm⁻¹, respectively, along with three additional transitions for the gauche conformer. From these data, the asymmetric potential function for the bromide molecules to V₁ = —493 ±16, V₂ = 595 ± 18, and V₃ = 2006 ± 6 cm⁻¹ with the trans conformer being more stable than the gauche conformer by 44 ± 20 cm⁻¹. The trans form is found experimentally to be more stable in the liquid phase by 30 ± 14 cm⁻¹ (83 ± 40 cal mol⁻¹). From the relative intensities, in the Raman spectra, of the CCl stretches measured as a function of temperature, the gauche conformer of the chloride molecules to be 167 ± 71 cm⁻¹ (479 ± 203 cal mol⁻¹) more stable than the trans conformer in the gas phase, and 73 ± 10 cm⁻¹ (208 ± 29 cal mol⁻¹) more stable in the liquid phase. The methyl torsions for the gauche and trans conformers of both molecules are tentatively assigned in the gas phase and the barriers have been calculated. The results of this study are compared with previous studies on these molecules.     

Isomerization of CH3O+=CHCH3 to CH2=O+CH2CH3

Ab initio calculations establish that CH₃O⁺=CHCH₃ (1) rearranges in gas phase isolation to CH₂=O⁺C₂H₅ (2) directly rather than through CH₃OCH₂CH ₂ ⁺ (3). The reaction is predicted to be antarafacial, in accord with the Woodward-Hoffmann (W-H) predictions. We predict an activation energy of 212.0 kJ/mol for this process at the QCISD(T)/6-311G**//MP2/6-311G** level. We also reinvestigated the degenerate rearrangement of CH₃O=CH ₂ ⁺ by a 1,3-sigmatropic shift. The W-H model is not a good one for the transition state (TS) for the latter reaction because the π bonding has been completely broken off. That TS is stabilized by three-center bonding between the carbons and the hydrogen being transferred. We also examined the questions of the importance of polarization functions on hydrogen and a set of outer valence functions on all the atoms in describing these hydrogen transfer TSs, and whether it is necessary to include these functions in the TS optimization runs. For the rearrangements we studied, polarization functions on hydrogen are crucial only for 1,2 hydrogen shifts. The 6-31G* basis set is adequate and good for the optimization of TSs of other ring sizes. For the 1,3 and 1,4 shifts we examined, a combination of both outer valence functions and polarization functions on hydrogen causes reductions in the computed activation energies ranging from 5.9 kJ/mol for the 1,4 shift at the RHF level to 15.6 kJ/mol for the 1,3 shift at the MP2 level.     

An efficient synthesis of dialkyl 2-(diphenoxyphosphoryl)-3-(alkylthio)succinates from alkylthiols, triphenyl phosphite and dialkyl acetylenedicarboxylates

An efficient synthesis of dialkyl 2-(diphenoxyphosphoryl)-3-(alkylthio)succinates, as a mixture of two diastereomers, in 78–90% yields, is described via reaction between alkylthiols, dialkyl acetylenedicarboxylates, and triphenyl phosphite. The structures of products were deduced from their high-field ¹H, ¹³C, and ³¹P NMR spectra, and IR spectral data. Since these hosphonate esters possess two stereogenic centers, two diastereomers with gauche HCCH arrangements are possible. Observation of ³ J _HH = 3.5-4.6 Hz for the vicinal methine protons confirmed the dominance of the gauche arrangement. A mechanism is proposed for the formation of products.     

Substituted propanes: V. The vibrational spectra,dipole moments and conformations of 1,2-dichloro-, 1-chloro-2-bromo- and 1,2-dibromopropane

The infrared and Raman spectra of 1,2-dichloro-, 1-chloro-2-bromo- and 1,2-dibromopropane were recorded as liquids, in polar and non-polar solvents and in the crystalline state at low temperatures. The infrared spectrum of a high pressure crystal of 1,2-dibromopropane was recorded at ambient temperature. Dipole measurements were carried out in CCl₄ and C₆H₆solutions.Each of the 1,2-dihalopropanes existed as a mixture of three conformers in the liquid state, the one with the halogens in the anti position was in large abundance. Spectral and dipole measurements revealed a comparatively larger concentration of the two polar gauche conformers in polar solvents. All the compounds crystallized in the anti form. The C-halogen stretching vibrations have been interpreted in detail. Vibrational analyses of the anti conformers have been carried out and a tentative assignment of the majority of the gauche bands has been proposed.     

Spectra and structure of organophosphorus compounds—XXX. Vibrational and conformational study of methoxy difluorophosphinoxide-d0 and -d3

The i.r. (4000-40 cm⁻¹) and Raman (4000-10 cm⁻¹) spectra of gaseous, liquid and solid methoxy difluorophosphinoxide, CH₃OP(O)F₂, and the deuterated analog have been recorded. Results obtained from variable solvent and matrix isolation studies are consistent with the existence of both trans (CO bond trans to the PO bond) and gauche (dihedral angle approximately 120° from the trans form) conformers in the fluid phases. From simulations of observed gas phase i.r. band profiles, it was possible for assignments to be made to the individual conformers for a number of the fundamentals. Variable temperature studies carried out for the gaseous and liquid phases give energy differences between the gauche and trans conformers of 451 ± 100 cm⁻¹ (1.29 ± 0.3 kcal/mol) and 69 ± 20 cm⁻¹ (197 ± 57 cal/mol), respectively. Furthermore, these data are consistent with the gauche form being the thermodynamically preferred conformer for the gas phase whereas the trans conformer is preferred in the liquid phase and the only conformer present in the annealed solid. The methoxy torsional mode of the gauche conformer has been assigned to a very strong band observed in the far i.r. spectrum of the gas phase at 42 cm⁻¹. The matrix isolation spectra of the normal compound in Ar, CO and N₂ matrices indicated no changes in the conformational equilibrium among these different matrices and this equilibrium remains unchanged upon annealing the matrices.     

Photolysis of open-chain 1,2-diazidoalkenes: generation of 2-azido-2H-azirines, formyl cyanide, and formyl isocyanide

Solutions of several open-chain 1,2-diazidoethenes were photolyzed to yield 2-azido-2H-azirines, which were identified by NMR spectroscopy at low temperature. On prolonged irradiation or warm-up of the NMR solutions, these heterocycles lost a second molecule of nitrogen to be cleaved into two fragments of cyano compounds. In the case of (Z)-2,3-diazidocinnamaldehyde, the formation of formyl cyanide was detected by IR spectroscopy when the photolysis was performed in argon matrix. The latter substance was rearranged to formyl isocyanide on irradiation. This new species was characterized by comparison of its experimental and calculated (B3LYP/6-311+G^∗∗) IR spectrum.     

Theoretical investigations on structure, electrostatics potentials and vibrational frequencies of Li+ - CH3- O- (CH2- CH2- O)n- CH3 (n=3-7) conformers

Electronic structure, charge distributions and vibrational characteristics of CH₃ O(CH₂ CH₂ O) _n CH₃ (n=3-7) have been derived using the ab initio Hartree Fock and density functional calculations. For tri- to hexaglymes the lowest energy conformers have trans- conformation around the C-C and C-O bonds of the backbone. For heptaglyme (n=7 in the series), however, gauche-conformation around the C-C bonds renders more stability to the conformer and turns out to be 10.1 kJ mol ⁻¹ lower in energy relative to the conformer having trans-orientation around the C-C and C-O bonds. The molecular electrostatic potential topographical investigations reveal deeper minima for the ether oxygen in conformers having the gauche conformation around the C-C bonds over those for the trans- conformers. A change from trans- to gauche-conformation around the C-C bonds of the lowest energy conformer of heptaglyme engenders a triplet of intense bands ∼1,150 cm ⁻¹ in the vibrational spectra. Theoretical calculations predict that Li ⁺ binds strongly to the heptaglyme conformer in the above series. The frequency shifts in the vibrational spectra of CH₃O(CH₂CH₂O) _n CH₃- Li⁺ (n=3-7) conformers have been discussed     

Proton NMR study on two structures of 3′-O-(acetylimino)3′-de(phosphinico)-thymidylyl-(3,5′)-deoxythymidine in aqueous solution

The solution structure of one of dithymidine monophosphate (TpT) analogues, containing an (N-acetyl)imino backbone linkage (NCOCH₃) of 3′-O-(acetylimino)3′-de(phosphinico)-thymidylyl-(3,5′)-deoxythymidine (T_NT), has been determined by proton NMR. Two structures, designated as major and minor forms, in a ratio of about 3:2 coexist when the solution temperature is <25°C. Both forms adopt anti conformation with respect to the glycosidic bond, S-type deoxyribofuranose pucker, and have no base stacking. The backbone torsion angles ε′, φ_ON, φ_NC, and γ′ are trans, gauche⁺, gauche⁺, and gauche⁺ for the major form; and gauche⁻, gauche⁻, gauche⁻, and gauche⁺ for the minor form. Only major form is found at >25°C.     

NMR spectra of oriented 2,2,2-trifluoroethanol (CF3CH2OH)

Photolysis of hydrogen sulphide in argon, nitrogen and carbon monoxide matrices at 20 K produces HS radicals and S atoms. On warming the matrix, H₂S₂ and S₂ molecules are formed as a result of recombination reactions. The latter are identified by a blue-purple emission observed during warm-up of the matrix.     

Does the HO2 radical react with H2S,CH3SH,and CH3SCH3?

The kinetics of the title reactions were investigated in a discharge flow tube by using laser magnetic resonance detection of HO₂. The upper limits for the bimolecular rate constants for the reactions of HO₂ with H₂S (k₁), CH₃SH (k₂), and CH₃SCH₃ (k₃) are <3 × 10^?15, <4 × 10^?15, and <5 × 10^?15 cm³ molecule^?1 s^?1, respectively, at 298 K. Our upper limit for k₁ is three orders of magnitude lower than the previously reported value. Measurements at higher temperatures also yield similar upper limits. Our results suggest that HO₂ is not an important oxidant for these reduced compounds in the atmosphere. © 1994 John Wiley & Sons, Inc.     

Electron ionization induced metastable decompositions of isomeric trimethylsilylmethanol, (CH3)3SiCH2OH, and methoxytrimethylsilane, (CH3)3SiOCH3

The metastable decompositions of trimethylsilylmethanol, (CH₃)₃SiCH₂OH (MW: 104, 1) and methoxytrimethylsilane, (CH₃)₃SiOCH₃ (MW: 104, 2) upon electron ionization have been investigated by use of mass-analyzed ion kinetic energy (MIKE) spectroscopy and D labeling. The metastable ions of 1 ^·+ decompose to give the fragment ions m/z 89 (CH ₃ ^· loss) and 73 (^·CH₂OH loss), whereas those of 2 ^·+ only yield the fragment ion m/z 89 (CH ₃ ^· loss). The latter fragment ion is generated by loss of a methyl radical from the trimethylsilyl group via a simple cleavage reaction as shown by D labeling. However, the fragment ions m/z 89 and 73 from 1 ^·+ are generated following an almost statistical exchange of the original methyl and methylene hydrogen atoms in the molecular ion as shown also by D labeling. This exchange indicates a complex rearrangement of the molecular ion of 1 ^·+ prior to metastable decomposition for which as key step a 1,2-trimethylsilyl group migration from carbon to oxygen is suggested. A different behavior is also found between the source-generated m/z 89 ions from 1 ^·+ which decompose in the metastable time region to give ions m/z 61 by loss of ethylene and those from 2 ^·+ which decompose in the metastable region to yield ions m/z 59 by elimination of formaldehyde.