Assessment of multicoefficient correlation methods, second-order Møller-Plesset perturbation theory, and density functional theory for H3O(+)(H2O)n (n = 1-5) and OH(-)(H2O)n (n = 1-4)

We have assessed the ability of 52 methods including 15 multicoefficient correlation methods (MCCMs), two complete basis set (CBS) methods, second-order M?ller-Plesset perturbation theory (MP2) with 5 basis sets, the popular B3LYP hybrid functional with 6 basis sets, and 24 combinations of local density functional and basis set to accurately reproduce reaction energies obtained at the Weizmann-1 level of theory for hydronium, hydroxide, and pure water clusters. The three best methods overall are BMC-CCSD, G3SX(MP3), and M06-L/aug-cc-pVTZ. If only microsolvated ion data is included, M06-L/aug-cc-pVTZ is the best method; it has errors only half as large as the other density functionals. The deviations between the three best performing methods are larger for the larger hydronium- and hydroxide-containing clusters, despite a decrease in the average reaction energy, making it impossible to determine which of the three methods is overall the best, so they might be ranked in order of increasing cost, with BMC-CCSD least expensive, followed by M06-L/aug-cc-pVTZ. However, the cost for M06-L will increase more slowly as cluster size increases. This study shows that the M06-L functional is very promising for condensed-phase simulations of the transport of hydronium and hydroxide ions in aqueous solution.     

Reactions of CH3SH and CH3SSCH3 with gas-phase hydrated radical anions (H2O)n(•-), CO2(•-)(H2O)n, and O2(•-)(H2O)n

The chemistry of (H(2)O)(n)(?-), CO(2)(?-)(H(2)O)(n), and O(2)(?-)(H(2)O)(n) with small sulfur-containing molecules was studied in the gas phase by Fourier transform ion cyclotron resonance mass spectrometry. With hydrated electrons and hydrated carbon dioxide radical anions, two reactions with relevance for biological radiation damage were observed, cleavage of the disulfide bond of CH(3)SSCH(3) and activation of the thiol group of CH(3)SH. No reactions were observed with CH(3)SCH(3). The hydrated superoxide radical anion, usually viewed as major source of oxidative stress, did not react with any of the compounds. Nanocalorimetry and quantum chemical calculations give a consistent picture of the reaction mechanism. The results indicate that the conversion of e(-) and CO(2)(?-) to O(2)(?-) deactivates highly reactive species and may actually reduce oxidative stress. For reactions of (H(2)O)(n)(?-) with CH(3)SH as well as CO(2)(?-)(H(2)O)(n) with CH(3)SSCH(3), the reaction products in the gas phase are different from those reported in the literature from pulse radiolysis studies. This observation is rationalized with the reduced cage effect in reactions of gas-phase clusters.     

Density functional investigations on the (H2O)n·CCH and (H2O)n·HCC complexes (n=1–3)

The electronic structures and energies of (H₂O)_n·CCH and (H₂O)_n·HCC complexes (n=1–3) between CCH and water have been theoretically investigated at the UB3LYP/6-311++G(2df,p)//UB3LYP/6-311G(d,p) level. The complexes with n=2–3 are cyclic structures with homodromic hydrogen-bond chain. The (H₂O)_n·CCH (n=1–3) complexes show increasing stabilities towards CCH- or H₂O-eliminations of 2.3, 5.8 and 7.6 kcal/mol and are energetically more stable than the corresponding (H₂O)_n·HCC complexes by 0.8, 2.7 and 3.4 kcal/mol, respectively, due to the charge-separation-enhanced hydrogen bonds within (H₂O)_n·CCH (n=2,3). Strong interactions between CCH and (H₂O)₂ and (H₂O)₃ clusters suggest special solvent effects of water on the chemical behavior of unsaturated radicals.     

Interlayer inclusion of tetracyanonickelate anion and water molecules: The crystal and molecular structure of [-ZN(en)2-μ-(NC)2-NI-μ -(CN)2-ZN(en) -] n 2n+ ·n[NI(CN)4]2− · 3n H2O

The crystal structure of [Zn(en)₂- (NC)₂Ni(CN)₂ Zn(en)][Ni(CN)₄]· 3 H₂O consists of infinite positively charged wave-shaped layers of composition [Zn(en)₂-(NC)₂Ni(CN)₂- Zn(en)] _n ²ⁿ⁺ with the [Ni(CN)₄]^2– anions and water molecules included between them. Both Ni atoms exhibit square-planar coordination. The chelate bonded en (=ethylenediamine) and N-bonded cyano ligands around two independent zinc atoms form a deformed tetrahedron and a deformed octahedron, respectively. Yellow needles of the complex belong to the orthorhombic space groupPbcm witha = 6.977(1),b = 25.407(4),c = 14.876(2)Å,Z = 4,D _m = 1.74(1) g cm^–3 andD _c = 1.739 g cm^–3. The structure was refined toR = 6.31 %.     

乙醇-水分子团簇C2H5OH(H2O)n (n=1-9)稳定结构的量子化学研究

采用密度泛函理论B3LYP方法, 在B3LYP/6-311++G(2d,2p)//B3LYP/6-311++G(d,p)基组水平上对乙醇-水分子团簇(C₂H₅OH(H₂O)_n (n=1-9))的各种性质进行研究, 如: 优化的几何构型、结构参数、氢键、结合能、平均氢键强度、自然键轨道(NBO)电荷分布、团簇的生长规律等. 结果表明, 从二维(2-D)环状结构到三维(3-D)笼状结构的过渡出现在n=5的乙醇-水分子团簇中. 此外, 利用团簇结合能的二阶差分、形成能、能隙等性质, 发现在n=6时乙醇-水分子团簇的最低能量结构稳定性较好, 可能为幻数结构. 最后, 为了进一步探讨氢键本质, 将C₂H₅OH(H₂O)_n (n=2-9)最低能量结构的各种性质与纯水分子团簇(H₂O)_n (n=3-10)比较, 结果表明前者与后者中的水分子之间氢键相似.     

Syntheses and structures of p-HOOCC6F4COOH · H2O (H2L · H2O) and luminescent coordination polymers [Tb2(H2O)4(L)3 · 2H2O] n and Tb2(Phen)2(L)3 · 2H2O

Compounds p-HOOCC₆F₄COOH · H₂O (H₂L · H₂O), [Tb₂(H₂O)₄(L)₃ · 2H₂O] _n (I), and Tb₂(Phen)₂(L)₃ · 2H₂O (II) are synthesized. According to the X-ray structure analysis data, the crystal structure of H₂L · H₂O is built of centrosymmetric molecules H₂L and molecules of water of crystallization. The crystal structure of compound I is built of layers of coordination 2D polymer [Tb₂(H₂O)₄(L)₃] _n and molecules of water of crystallization. The ligands are the L^2? anions performing both the tetradentate bridging and pentadentate bridging-chelating functions. The coordination polyhedron TbO₉ is a distorted three-capped trigonal prism. Acid H₂L manifests photoluminescence in the UV region (??_max = 368 nm). Compounds I and II have the green luminescence characteristic of the Tb³⁺ ions, and the band with ??_max = 545 nm (transition ⁵ D ₄?? ⁷ F ₅) is maximum in intensity. The photoluminescence intensity of compound II is higher than that for compound I.     

Structurally nonrigid molecular complexes (HF)n(H2O)m (n + m ≥ 2) and their spectroscopic features

The problem of the formation and stability of structurally nonrigid, donor—acceptor molecular complexes is considered. These complexes are formed between the molecules of water and hydrogen fluoride, the latter being the hydrolysis product of the chemical, radiochemical, and metallurgical industrial wastes. Based on the results of ab initio quantum-chemical calculations of the potential energy surfaces by the Hartree—Fock—Roothaan method, the equilibrium configurations of the (H₂O) _n (HF) _m complexes (n : m = 1 : 1; 1 : 2; 2 : 1; 2 : 2; and 3 : 3) were determined. These configurations are necessary for correct interpretation of the IR absorption spectra and for routine remote monitoring of such environmentally hazardous complexes in the Earth atmosphere. The harmonic vibrational frequencies of the (H₂O) _n (HF) _m complexes (n + m 2) were calculated and the interaction energies between the monomers were found. The influence of UV radiation on the (H₂O) _n (HF) _n complexes (n = 1—3) upon the transition from the ground to the lowest excited singlet electronic state was studied. Characteristic spectroscopic features of the (H₂O) _n (HF) _m complexes were established.     

(Cl2AlNH2)n和(H2AlNH2)n(n=1～5)簇结构及其热力学性质

用HF自洽场理论和密度泛函理论(DFT)的B3LYP方法,在6 31G水平上研究了低聚物(Cl2AlNH2)n和(H2AlNH2)n(n=1～5)簇的几何构型、电子结构和聚合反应热力学性质,比较了两个系列化合物中化学键的强度.结果表明,Cl2AlNH2和H2AlNH2分子为C2 (EC)平面型结构,其中Al－N为由一个σ键和一个键组成的双键.(Cl2AlNH2)n和(H2AlNH2)n(n=1～5)分子为Dnh对称,Al－N是典型的σ单键 .低聚物(Cl2AlNH2)n和(H2AlNH2)n的稳定性顺序分别为: 3 > 2 > 4> 5 > 1和8 > 7 > 9 > 11 > 6.     

Quantum chemical calculations and the structure of Ni n (C2H2) complexes (n = 1–4)

Complexes of nickel atoms and small clusters with acetylene molecules are studied within the density functional theory. A trend toward the predominant formation of structures with bridge hydrogen atoms is observed in reactions between Ni _n and acetylene with rising n.     

Two new Pb(II) coordination polymers, [Pb2(μ-4,4′-bipy) (μ-2-sb)2(DMF)] n and {[Pb2(μ-4,4′-bipy) (μ-2-sb)2(H2O)2] · H2O} n (4,4′-bipy = 4,4′-bipyridine and 2-H2sb = 2-sufobenzoic acid)

Two new 2D Pb₂(μ-4,4′-bipy)(μ-2-sb)₂ coordination polymers, [Pb₂(μ-4,4′-bipy)(μ-2-sb)₂(DMF)] _n (1) and {[Pb₂(μ-4,4′-bipy)(μ-2-sb)₂(H₂O)₂] · H₂O} _n (2), have been synthesized, characterized and studied by X-ray crystallography. The structural studies show the Pb atoms to have seven- and eight-coordinate holodirected geometries.     

Preparation and characterization of {[La2(IA)4(H2O)4][μ3-(IA)]2[Mn(H2O)4]}n2nCl

Journal of the Iranian Chemical Society - A novel 4f–3d lanthanum–manganese isonicotinic acid complex, {[La2(IA)4(H2O)4][μ3-(IA)]2[Mn(H2O)4]}n2nCl (1)...     

Syntheses and crystal structures of two Cd(II) coordination polymers: one-dimensional chain [Cd(C4H6N2)2(C4H2O4)(H2O)2] n and two-dimensional sheet [Cd(C4H6N2)(H2O)(C4H4O4)] n · n H2O

Two new Cd(II) coordination polymers, [Cd(C₄H₆N₂)₂(C₄H₂O₄)(H₂O)₂] _n (1) (where C₄H₆N₂?=?2-methylimidazole, C₄H₂O₄?=?fumarate), and [Cd(C₄H₆N₂)(H₂O)(C₄H₄O₄)] _n ?·?nH₂O (2), (where C₄H₄O₄?=?succinates), have been prepared and structurally characterized by single crystal X-ray diffraction. Complex 1 crystallizes in the triclinic space group P 1 in a one-dimensional chain structure, in which carboxy is monodentate; a three-dimensional supermolecular network structure was formed through hydrogen bonding. In complex 2, the coordination geometry of the Cd atoms is a pentagonal bipyramid, and a two-dimensional sheet is formed though carboxyl group bridging. In 1 and 2, IR spectra indicate the presence of bridging carboxyl groups, confirmed by structure analyses.     

The reaction between HO and (H2O) n (n?=?1, 3) clusters: reaction mechanisms and tunneling effects

The reaction between the HO radical and (H₂O)n (n?=?1, 3) clusters has been investigated employing high-level quantum mechanical calculations using DFT-BH&HLYP, QCISD, and CCSD(T) theoretical approaches in connection with the 6-311?+?G(2df,2p), aug-cc-pVTZ, and aug-cc-pVQZ basis sets. The rate constants have also been calculated and the tunneling effects have been studied by means of time?Cdependent wavepacket calculations, performed using the Quantum?CReaction Path Hamiltonian method. According to the findings of previously reported theoretical works, the reaction between HO and H₂O begins with the formation of a pre-reactive complex that is formed before the transition state, the formation of a post-reactive complex, and the release of the products. The reaction between HO and (H₂O)₂ also begins with the formation of a pre-reactive complex, which dissociates into H₂O??HO?+?H₂O. The reaction between HO and (H₂O)₃ is much more complex. The hydroxyl radical adds to the water trimer, and then it occurs a geometrical rearrangement in the pre-reactive hydrogen-bonded complex region, before the transition state. The reaction between hydroxyl radical and water trimer is computed to be much faster than the reaction between hydroxyl radical and a single water molecule, and, in both cases, the tunneling effects are very important mainly at low temperatures. A prediction of the atmospheric concentration of the hydrogen-bonded complexes studied in this work is also reported.     

7-羟基喹啉-(H2O)n(n=1,2)复合物氢键相互作用的密度泛函理论研究

许多生理过程都通过分子间相互作用来实现。氢键则是最基本的化学作用力之一。具有碱性和酸性双官能团的芳香族化合物能与水作用形成氢键网络,对于实现生物体系的物质转移（质子转移、离子转移）起着十分重要的作用。在非水溶剂中,通过氢键发生质子转移反应动力学实验特征也己进行了广泛的研究。本文用密度泛函B3LYP方法在6-311G^＊基组水平上对7-羟基喹啉-水复合物相互作用进行了研究,从成键特征及氢键复合物的稳定关系方面进行了理论计算。     

Theoretical study of negatively charged Fe(-)-(H2O)(n ≤ 6) clusters

Interactions of a singly negatively charged iron atom with water molecules, Fe(-)-(H(2)O)(n≤6), in the gas phase were studied by means of density functional theory. All-electron calculations were performed using the B3LYP functional and the 6-311++G(2d,2p) basis set for the Fe, O, and H atoms. In the lowest total energy states of Fe(-)-(H(2)O)(n), the metal-hydrogen bonding is stronger than the metal-oxygen one, producing low-symmetry structures because the water molecules are directly attached to the metal by basically one of their hydrogen atoms, whereas the other ones are involved in a network of hydrogen bonds, which together with the Fe(δ-)-H(δ+) bonding accounts for the nascent hydration of the Fe(-) anion. For Fe(-)-(H(2)O)(3≤n), three-, four-, five-, and six-membered rings of water molecules are bonded to the metal, which is located at the surface of the cluster in such a way as to reduce the repulsion with the oxygen atoms. Nevertheless, internal isomers appear also, lying less than 3 or 5 kcal/mol for n = 2-3 or n = 4-6. These results are in contrast with those of classical TM(+)-(H(2)O)(n) complexes, where the direct TM(+)-O bonding usually produces high symmetry structures with the metal defining the center of the complex. They show also that the Fe(-) anions, as the TM(+) ions, have great capability for the adsorption of water molecules, forming Fe(-)-(H(2)O)(n) structures stabilized by Fe(δ-)-H(δ+) and H-bond interactions.     

Ab initio electron correlated studies on the intracluster reaction of NO+ (H2O)(n) → H3O+ (H2O)(n-2) (HONO) (n = 4 and 5)

Hydrated nitrosonium ion clusters NO(+)(H(2)O)(n) (n = 4 and 5) were investigated by using MP2/aug-cc-pVTZ level of theory to clarify isomeric reaction pathways for formation of HONO and fully hydrated hydride ions. We found some new isomers and transition state structures in each hydration number, whose lowest activation energies of the intracluster reactions were found to be 4.1 and 3.4 kcal mol(-1) for n = 4 and n = 5, respectively. These thermodynamic properties and full quantum mechanical molecular dynamics simulation suggest that product isomers with HONO and fully hydrated hydride ions can be obtained at n = 4 and n = 5 in terms of excess hydration binding energies which can overcome these activation barriers.     

Production of doubly charged clusters (H2O)n · Ba2+ and (H2O)n · Ca2+ under low temperature fast atom bombardment conditions

Production of doubly charged ions of alkaline earth metals Ba²⁺ and Ca²⁺ and their doubly charged clusters with water molecules (H₂O)_n · Ba²⁺, (H₂O)_n · Ca²⁺ (n = 1, 2, 3) by means of low temperature fast atom bombardment technique is observed in the case of crystalline hydrates of BaCl₂ and CaCl₂ salts, formed during freezing of water-salt solutions. Reasons for a possibility of production of the doubly charged species in the case of the two indicated salts and their absence in the case of chlorides of some other divalent metals (Mg, Mn, Co, Cu, Zn) are discussed. As to singly charged secondary ions Me⁺, MeCl⁺, MeOH⁺, [(H₂O)_n · MeCl]⁺, [(H₂O)_n · MeOH]⁺ (where Me is metal), high efficiency of their production from crystalline hydrates was observed and possible explanation of the phenomenon is suggested.     

Theoretical study of [Ni (H2O)n]2+(H2O)m (n ≤ 6, m ≤ 18)

The [Ni-(H(2)O)(n)](2+)(H(2)O)(m) (n ≤ 6, m ≤ 18) complexes were studied by means of first-principles all-electron calculations performed with the BPW91 gradient corrected functional and the 6-311+G(d,p) basis sets for the H, O, and Ni atoms. Triplet states were found as low-lying states for each (n, m) combination. The estimated Ni(2+)-(H(2)O)(n) binding energies (112.8-57.4 kcal/mol for the first layer and 52.0-23.0 kcal/mol for the second one) decreases and the Ni(2+)-OH(2) bond lengths lengthen as n + m increases. With six H(2)O moieties the Ni(2+) ion furnishes its first coordination sphere of octahedral geometry. Further water addition renders the formation of the second layer. The effect of Ni(2+) on the (H(2)O)(n)···(H(2)O)(m) hydrogen bond formation for several "n" and "m" combinations was studied, revealing an enhancement of this kind of bonding, which is of key importance for the stabilization and growth of the clusters. For some n + m isomers the second layer appears before the first octahedral layer is fully formed. For example, the square planar Ni(2+)-(H(2)O)(4) core originates two-dimensional 4 + 2 and 4 + 4 isomers, where each outer water molecule accepts two H-bonds, lying 2.0 kcal/mol above the 6 and 6 + 2 ground states. The clusters were also studied by IR spectra; the OH stretching vibrational frequencies allowed us to identify the outer solvation shells by the presence of red-shifted hydrogen bond regions.     

Photoelectron spectroscopy of (CO2)n(H2O) m − clusters

Photoelectron spectra of (CO₂)_nH₂O^? (2≤n≤8) and (CO₂)_n(H₂O) ₂ ^? (1≤n≤2) were measured at the photon energy of 3.49 eV. The spectra show unresolved broad features, which are approximated by Gaussians. The vertical detachment energies (VDEs) were determined as a function of the cluster size. For (CO₂)_nH₂O^?, the VDE-n plots exhibit a sharp discontinuity between n=3 and 4; the VDE value is ≈3.5 eV at n=3, while it drops down abruptly to 2.59 eV at n=4. This discontinuity in VDE is ascribed to "core switching" at n=4; a C₂O ₄ ^? dimer anion forms the core of (CO₂)_nH₂O^? for n≤3, while a monomer CO ₂ ^? is the core for n≥4. The (CO₂)₂(H₂O) ₂ ^? ion has a VDE of 2.33 eV, indicating the presence of a CO ₂ ^? monomer core in the binary clusters containing two H₂O molecules.     

Synthesis and Characterization of a Reduced Molybdenum(Ⅴ) Phosphate, (H3dien)2(H2dien)2[NaMo12O24(OH)6-(H2PO4)(HPO4)5(PO4)2]·nH2O(n= 10.92)

A new reduced molybdenum(Ⅴ) phosphate (H3dien)2(H2dien)2[NaMo12O24 (OH)6 (H2PO4)(HPO4)5(PO4)2]·nH2O(n= 10.92,dien = diethylenetriamine) has been synthesized under hydrothermal conditions and characterized by elemental analyses, IR and X-ray diffraction. C16H96.84MO12N12NaO72.92P8 (Mr = 3046.73) crystallizes in the monoclinic system, space group P21/c with a = 13.3575(18), b = 21.907(3), c = 15.654(2) A, β= 110.22(2)°, V= 4298.4(10) (A)3, Dc = 2.354 g/cm3, Z = 2, μ(MoKα) = 1.966 mm-1, F(000) = 2990.4, the final R = 0.0357 and wR = 0.1086 for 8739 observed reflections with Ⅰ> 2σ(Ⅰ). It consists of sandwich-shaped cluster anions [Na{Mo6P4}2]10- held together into a three-dimensional supramolecular framework through intermolecular hydrogen-bonding contacts. A probe reaction of the oxidation of acetaldehyde with H2O2 showed that this compound has high catalytic activity in the reaction.