Density-functional study for the NOx (x = 1, 2) dissociation mechanism on the Cu(1 1 1) surface

Spin-polarized density functional theory calculation is employed to study the adsorption and dissociation of NO₂ molecule on Cu(1 1 1) surface. It is shown that the most favorable adsorption structure is the NO₂ (T,T-O-,O′-nitrito) configuration which has an adsorption energy of −1.49 eV. The barriers for step-wise NO₂ dissociation reaction, NO_2(g) → N_(a) + 2O_(a), are 1.05 (for O–N–O bond activation), and 2.08 eV (for N–O bond activation), respectively, and the entire process is 0.6 eV exothermic. The energetics of single N–O dissociation with and without the presence of N atom or O atom on the surface are also calculated. The results indicate that in the presence of O atom on Cu(1 1 1) surface would raise the N–O dissociation barrier, whereas in the presence of N atom decrease it. The interaction nature between adsorbates and substrate is analyzed by the local density of states (LDOS) calculation.     

Fused hexacyclic tin compounds derived from 3-(3,5-di-t-butyl-2-hydroxy-phenylimino)-3H-phenoxazin-2-ol

The template synthesis of two tin compounds [N→Sn] 3-(2-oxo-phenylimino)-3H-phenoxazin-2-oxo-dimethyltin (1) and [N→Sn] 3-(2-oxo-phenylimino)-3H-phenoxazin-2-oxo-diphenyltin (2) is reported. The compounds are fused delocalized planar hexacyclic systems bearing a pentacoordinated diorganyl tin. They were identified by NMR, IR, TOF mass spectra and, for compound 1, by X-ray diffraction analysis.     

二甲氨基乙氧基氧杂硼烷对环氧树脂的潜伏固化活性

以3种含分子内N→B配位键的环状结构的二甲氨基乙氧基氧杂硼烷:β,β'-二甲氨基乙氧基-4,4,5,5-四甲基-1,3,2-二氧杂戊硼烷(PDB)、β,β'-二甲氨基乙氧基-5,5-二甲基-1,3,2-二氧杂己硼烷(NDB)和β,β'-二甲氨基乙氧基-1,3,2-苯并二氧硼烷(CDB)为研究对象,采用敞口观察法测定其水解稳定性,通过差示扫描量热法(DSC)、烘箱固化实验、恒温潜伏性实验及红外光谱(FTIR)分析,研究3种氧杂硼烷对环氧树脂的固化活性和潜伏性能,采用Ozawa-Avrami法估算固化反应的表观活化能(E a).结果表明,苯环π电子共轭效应、烷氧基给电子效应以及氧杂硼烷空间结构差异等因素影响了3种二甲氨基乙氧基氧杂硼烷上硼原子电子云密度及N→B配位络合强度,导致其水解稳定性及对环氧树脂的固化活性顺序为NDBPDBCDB,潜伏性能则正好相反.E51与PDB组成的单组分环氧树脂在常温放置3个月后,环氧基的转化率为0.22.     

An alkoxide anion-triggered tert-butyloxycarbonyl group migration. Mechanism and application

We report a fast N→O tert-butyloxycarbonyl (Boc) migration of the imide (3R,4R)-tert-butyl 3-((6-(bis(tert-butoxycarbonyl)amino)-4-methylpyridin-2-yl)methyl)-4-hydroxypyrrolidine-1-carboxylate (2) via a base-generated alkoxide. The mechanism of the migration is intramolecular, involving an unusual nine-membered cyclic transition state.     

Synthesis and structure of N-arylimines of β-tellurocyclohexenals with the intramolecular coordination N → Te bonds

A series of N-arylimines of β-tellurocyclohexenals 11 have been synthesized and the molecular and crystal structures of the compounds 11a-e and also β-(dimethyltelluronium)cyclohexenal perchlorate 12 studied by X-ray crystallography. All the compounds contain strong intramolecular coordination N → Te (O → Te) bonds of the hypervalent type. In 11a-e, the lengths of the N → Te bonds are within the range of 2.690-2.147 Å and are 1.0-1.5 Å shorter than the sum of the van der Waals radii of respective atoms. In the N-arylimines 11b-e with the electronegative groups attached to the tellurium center, the lengths of the N → Te bonds are very close to that characteristic of a standard covalent N-Te bond. The experimental observed geometries are well reproduced by the DFT calculations performed at B3LYP/LanL2DZ level of approximation. The energies of the intramolecular coordination N → Te bonds vary from 23 kJ mol⁻¹ for 11a to 119 kJ mol⁻¹ for 11e. The calculated energy of the O → Te bond in 12 was found to be 50 kJ mol⁻¹. The ¹²⁵Te NMR chemical shifts of compounds 11 span the wide range of 734.3-1622.4 ppm. The largest downfield ¹²⁵Te NMR chemical shifts are observed in the case of the compounds 11e, f in which the most electronegative atoms are attached to the tellurim centers.     

Spectroscopic investigation and thermal behavior of new carbonyl complexes [M(CO)4(N—N)(CuX)], (M = W,Mo; N—N = 2,2′-bipyridine, 1,10-phenanthroline; X = Cl,SCN)

[M(CO)₄(N—N)] reacts with CuCl to give new heterobimetallic metal carbonyls of the type [M(CO)₄(N—N)(CuCl)], M = W, Mo; N—N = 2,2-bipyridine (bipy), 1,10-phenanthroline (phen). Reactions of [M(CO)₄(N—N)(CuCl)] with NaSCN produced the series of complexes of general formula [M(CO)₄(N—N)(CuSCN)]. The i.r. spectral of all the bimetallic carbonyls exhibited the general four (CO) band patterns of the precursors. The u.v.–vis. spectral data for precursors and products showed bands associated with * (nitrogen ligands), dd (intrametal), as well as MLCT d* (nitrogen ligands) and MLCT d *(CO) transitions. The [M(CO)₄(N—N)(CuX)] (X = Cl, SCN) emission spectra showed only one band associated with the MLCT transition. The t.g. curves revealed a stepwise loss of CO groups. The initial decomposition temperatures of the [M(CO)₄(N—N)(CuX)] series suggest that the bimetallic compounds are indeed thermally less stable than their precursors, and the X-ray data showed the formation of MO₃, CuMO₄, Cu₂O and CuO as final decomposition products, M = W, Mo. The spectroscopic data suggests that the heterobimetallic compounds are polymeric.     

Mono- and diboronates derived from tridentate ONO ligands and arylboronic acids

The syntheses of eight [4.3.0] heterobicyclic boronates containing a N → B coordinative bond are described. The monomeric compounds were prepared by reaction of arylboronic acids with a tridentate ligand having the ONO donor set of atoms. It was shown that substituents at the para-position of the B-phenyl moiety transmit electronic effects to the CN bond which in turn is polarized by formation of the N → B coordination bond. At the same time, related tridentate ligands were also reacted with 1,4-benzenediboronic acid in order to prepare benzene diboron complexes. The structure of this type of compounds was confirmed by X-ray analysis for one of the derivatives.     

Possible intramolecular rearrangements of O-vinyloximes initiated by N—O bond dissociation: a quantum-chemical analysis

The potential surface of conformational transitions of O-vinylacetoxime was studied and the regions of starting states for possible isomeric transformations with the N—O bond dissociation as the limiting stage were recognized. The activation parameters and heat effects of intramolecular rearrangement O-vinylacetoxime iminoacetaldehyde were evaluated. Transition-state structure of the rearrangement was identified.     

Si-Fluoro substituted quasisilatranes (N → Si) FYSi(OCH2CH2)2NR

The reaction of fluorosilanes XYSiF₂ (X = Y = F; X = F, Y = Ph; X = Ph, Y = Me) with diethanolamines and their O-trimethylsilyl derivatives affords novel Si-fluoro substituted quasisilatranes 3, 5 and 9. These compounds were characterized by the multinuclear NMR spectroscopy and X-ray diffraction analysis. Experimental and theoretically calculated electron density distribution functions in crystal structure of 9 have shown that the N → Si coordination bond corresponds to polar bond with pronounced ionic contribution. Calculated N → Si bond order in the compound 9 does not exceed 1/3 of the normal Si-N bond. A strong N → Si coordination bond exists in compounds 3, 5 and 9 the length of which varies in the range 1.98-2.175 Å.     

High-pressure-promoted Fmoc-aminoacylation of N-ethylcysteine: preparation of key devices for the solid-phase synthesis of peptide thioesters

In this study synthesis of Fmoc-aminoacyl-N-ethyl-S-triphenylmethylcysteine, a new N→S acyl migratory device for the preparation of peptide thioesters by Fmoc solid-phase peptide synthesis (SPPS) is described. Condensation of Fmoc-aminoacyl fluoride and N-ethyl-S-triphenylmethylcysteine allyl ester, readily prepared from known S-triphenylmethylcysteine allyl ester, was efficiently promoted in CH₂Cl₂ under high-pressure (800 MPa). When the reaction was performed with the additive DIEA, considerable epimerization at the chiral centers occurred, affording a mixture of diastereomers. When the preparation procedure for N-ethyl-S-triphenylmethylcysteine allyl ester was changed and the additive DIEA in the high-pressure reaction was excluded, Fmoc-aminoacyl-N-ethyl-S-triphenylmethylcysteines was obtained as a single stereoisomer without epimerization. The Fmoc-l-leucine adduct thus prepared was deallylated and used for the SPPS of a known decapeptide. A remarkable increase (44%) in the overall yield of the decapeptidethioester was achieved, compared to the 7% obtained by the stepwise on-resin Leu-Cys condensation method.     

An Improved Method for the Preparation of Tetra-Coordinate Platinum(II) Chloro-Complexes Containing Bidentate or Terdentate Ligands Starting from cis/trans-[PtCl2(SMe2)2]

An improved method for the preparation of differently charged chelate Pt(II) chloro-complexes is reported. All the complexes have been obtained rapidly and in high yield, by simply reacting equimolar amounts of cis/trans- dichlorobis(dimethylsulphide)platinum(II) with the chelate ligand in an appropriate solvent (CH₂Cl₂, MeOH or H₂O). The ligands chosen were: 1,2-bis(diphenylphosphino)ethane (P—P), pyridine–2-carboxylate (N—O⁻), 2-[(methylthio)methyl]pyridine (N—S), 1,10-phenanthroline (N—N), bis(2-pyridylmethyl)sulphide (N—S—N), di-(2-picolyl)amine (N—N—N), pyridine-2,6-dicarboxylate (O—N—O²⁻) and 2,6-bis(methylthiomethyl)pyridine (S—N—S).     

On the mechanism of the P2-Na0.70CoO2→O2-LiCoO2 exchange reaction—Part II: an in situ X-ray diffraction study

A model was proposed to describe the exchange reaction of sodium by lithium in P2 crystals, it was based first on the formation of nucleation centers and then on the growth of O2 domains in P2 crystals from these nucleation centers. This study has shown that depending on the ratio between the growing and nucleation speeds, O2, O6 or faulted structures are obtained and that this model allows a good analysis of the exchange process. XRD patterns simulation and their comparison with that of experimental O2-LiCoO₂ have shown that there was almost no defects in the O2-LiCoO₂ structure obtained by ion exchange in water. Therefore, this study has shown that the growth of the O2 domains in the P2-Na_0.7CoO₂ crystals is faster than the formation of nucleation centers.This P2-Na_0.7CoO₂→O2-LiCoO₂ exchange reaction was also studied in situ by X-ray diffraction; simulations of key XRD patterns by P2-O2 intergrowths were also achieved. It was shown, in good agreement with the simulations, that the growth of O2 domains was faster than the formation of the nucleation centers and kinetically activated by a P2-Na_0.70CoO₂→P2^*-Na_∼0.50CoO₂ phase transition. For those reasons, the P2-Na_0.70CoO₂→O2-LiCoO₂ exchange reaction in water leads to an O2 phase, with an almost ideal packing.     

Reaction mechanisms in peptide synthesis. Part 2. Tautomerism of the peptide bond

Summary We had concluded in previous work that ring opening of a 2-alkyl-5(4H)-oxazolone by water or ammonia leads to transient high-energy imidol intermediates which instantly tautomerize to the native amides. Using the MOPAC molecular orbital program, detailed geometric and energetic characteristics of the tautomerism of a peptide bond have been determined on the AM1 level. The results demonstrate that tautomerism of a peptide bond comprises a three-stage process involving three successive transition states and a bimolecular mechanism: (i) EZ peptide bond isomerization followed by dimerization, (ii) concerted double-hydrogen exchange leading to an -hydroxyimine (imidic acid) followed by splitting of the dimer, and (iii) ZE N-methylimine inversion. While pathway (iiiiii) is predicted as a feasible route terminating in the formation of a peptide bond, the inverse route (iiiiii) is excluded as a possible initial step in the generation of a 5(4H)-oxazolone intermediate.     

Synthesis of layered zinc hydroxide chlorides in the presence of Al(III)

Zinc hydroxide chloride particles were synthesized by hydrolysis of ZnCl₂ solutions dissolving AlCl₃ at different atomic Al/Zn ratios from 0 to 1.0 and characterized by various techniques. Increasing Al/Zn ratio changed the crystal phases of the products as ZnO→ZnO+ZHC (Zn₅(OH)₈Cl₂·H₂O)→ZHC→LDH (layered double hydroxides, Zn-Al-Cl) and the particle morphology as agglomerates (ZnO)→fine particles (ZnO)→plates (ZHC)+rods (ZnO)→plates (ZHC)→plates (LDH). The atomic Cl/Zn ratios of LDH particles formed at Al/Zn?0.3 were ca. 0.3 despite the increase of Al/Zn ratio, being due to the intercalation of CO₃²⁻ into the LDH crystal. The OH⁻ content of LDH estimated by TG was reduced by the deprotonation of OH⁻ to counteract the excess positive charge produced by replacing Zn(II) with Al(III). ZHC exhibited a high adsorption selectivity of H₂O.     

Hydrogen-bonded supramolecular motifs in crystal structures of trimethoprim barbiturate monohydrate (I) and 2-amino-4,6-dimethylpyrimidinium barbiturate trihydrate (II)

In the present study, we report the crystal structures of two organic salts, namely 2,4-diamino-5-(3′,4′,5′-trimethoxybenzyl)pyrimidinium (TMP) barbiturate monohydrate (TMPBAR) (I), 2-amino-4,6-dimethylpyrimidinium (AMPY) barbiturate trihydrate (AMPYBAR) (II). In both complexes, one ring nitrogen of TMP and AMPY are protonated as a result of proton transfer from the−CH₂ group of barbituric acid. In compound (I), the TMP cation and barbiturate anion are paired through twoN−H···O and one N−H···N hydrogen bonds. This pair further self-organizes through N−H···O hydrogen bonds to generate an array of six hydrogen bonds. These arrays are further cross-linked by N−H···O hydrogen bonds forming a sheet-like structure. The water molecule is also embedded in the sheet via O−H···O and C−H···O hydrogen bonds, forming a rosette-like supramolecular motif. TMP cations are also bridged by alternating water molecules via C−H···O and O−H···N hydrogen bonds. In compound (II), the symmetrical barbiturate anions self-organize on both sides through N−H···O hydrogen bonds generating a supramolecular chain. These chains are cross-linked by the three water molecules. A pair of barbiturate anions and two water molecules constitute an array of four hydrogen bonds (DADA quadruple array). These arrays are cross-linked by another water molecule. 2-Amino-4,6-dimethylpyrimidine cations are paired through N−H···N hydrogen bonds. These pairs are bridged by three water molecules generating a supramolecular ribbon. The barbiturate chains and base pairs are arranged in an alternate manner via N−H···O and O−H···O hydrogen bonds to generate a 3-D network.     

Ruthenium-catalyzed cascade C–H activation/annulation of N-alkoxybenzamides: reaction development and mechanistic insight

A highly selective ruthenium-catalyzed C–H activation/annulation of alkyne-tethered N-alkoxybenzamides has been developed. In this reaction, diverse products from inverse annulation can be obtained in moderate to good yields with high functional group compatibility. Insightful experimental and theoretical studies indicate that the reaction to the inverse annulation follows the Ru(ii)–Ru(iv)–Ru(ii) pathway involving N–O bond cleavage prior to alkyne insertion. This is highly different compared to the conventional mechanism of transition metal-catalyzed C–H activation/annulation with alkynes, involving alkyne insertion prior to N–O bond cleavage. Via this pathway, the in situ generated acetic acid from the N–H/C–H activation step facilitates the N–O bond cleavage to give the Ru-nitrene species. Besides the conventional mechanism forming the products via standard annulation, an alternative and novel Ru(ii)–Ru(iv)–Ru(ii) mechanism featuring N–O cleavage preceding alkyne insertion has been proposed, affording a new understanding of transition metal-catalyzed C–H activation/annulation.

A highly selective ruthenium-catalyzed C–H activation/annulation through a pathway involving N–O bond cleavage prior to alkyne insertion is developed.     

The scaled-particle theory and solvent isotope effects on the thermodynamic properties of inert solutes in water and methanol

The scaled-particle theory has been applied to the calculation of the thermodynamic changes associated with the formation of a cavity in several isotopic varieties of liquid water and methanol. From these results, the thermodynamic functions for the transfer of a cavity (or a hard-sphere solute) have been computed for the following solvent pairs: H₂OD₂O, H₂OH₂ ¹⁸O, H₂ ¹⁸OD₂ ¹⁸O, D₂OD₂ ¹⁸O, CH₃OHCH₃OD. For the last two of these solvents, density measurements required for the calculations were carried out as a function of temperature. The calculated deuterium solvent isotope effect on the heats and entropies of hard-sphere solutes in water is much greater than the¹⁸O isotope effect; the former also exhibits a more pronounced temperature dependence. The transfer functions computed for hard-sphere solutes are compared to experimental data on the transfer of various solutes from H₂O to D₂O and from CH₃OH to CH₃OD. In most of the cases examined, the cavity effect accounts for a large part of the transfer quantities measured for rare gases, hydrocarbons, and solutes containing a significant hydrocarbon substituent.     

Aromaticity in heterocycles: new HOMA index parametrization

Abstract  

A new parametrization for the Harmonic Oscillator Model of Aromaticity (HOMA) index to determine aromaticity of heterocycles is introduced. The new HOMA for Heterocycle Electron Delocalization (HOMHED) is based on the experimental data from electron diffraction X-ray for the reference molecules used to estimate the simple, double, and optimal bond lengths. Bond length of “pure” single and double bonds of non-conjugated systems or systems without π-electrons and/or n-electron delocalization were considered. The HOMHED index was determined for a series of five and six heterocycles with C–C, C–N, C–O, C–S, N–N, N–O, and N–S bonds. The π-electron delocalization of these heterocycles was determined by Krygowski-reformulated HOMA and HOMHED and it was proved that HOMHED worked in line with HOMA for all heterocycles, except those containing oxygen, which were found to be weak aromatic from Krygowski rHOMA calculations.     

A spiral-like chain from a hydrogen-bonded cyclic dichloride containing a water dimer in a quaternary diammonium dichloride trihydrate

The reaction of benzyl chloride with tetramethylethylenediamine (tmen) results in the formation of the quaternary diammonium dichloride trihydrate (dbtmen)Cl₂·3H₂O 1 (dbtmen is N,N′-dibenzyl-N,N,N′,N′-tetramethylethylenediammonium) in good yields. 1 crystallises in the monoclinic P2₁/c space group and its structure consists of N,N′-dibenzyl-N,N,N′,N′-tetramethylethylenediammonium dication, two chloride anions and three crystal water molecules all of which are located in general positions. The organic dication is H-bonded to the chloride anions and the crystal waters with the help of intra-and intermolecular C-H···Cl and C-H···O interactions, while the chloride anions are linked to the crystal waters via O-H···Cl interactions. One of the crystal waters is linked through an intermolecular O-H···O bond with another water resulting in the formation of a water dimer. The O-H···Cl and O-H···O interactions between the chloride anions and water molecules lead to the formation of a five-membered {O₃Cl₂} cyclic dichloride containing a water dimer. The five-membered rings are linked into a chain with the aid of a O-H···Cl interaction. The organic cations are organised in zigzag fashion on either side of the chain and are further linked to the anionic water chain via weak C-H···O and C-H···Cl interactions, leading to the supramolecular organisation of the rings into a spiral-like of chain. Dedicated to Prof. Sabyasachi Sarkar on the occasion of his 60^th birthday     

Synthesis and characterization of (N→B) phenyl[N-alkyl-N-(2-alkyl)aminodiacetate-O,O′,N]boranes and phenyl[N-alkyl-N-(2-alkyl) aminodiacetate-O,O′,N]boranes

The reaction of boron heterocycles 1 and 2 with n-butyl lithium and alkyl halides led to (N→B) phenyl[N-alky-N-(2-alkyl)aminodiacetate-O,O′,N]boranes 3–6(a–b), 7(b) and 9(b), where alkyl can be in exo and/or endo position, and phenyl[N-alkyl-N-(2-alkyl)aminodiacetate-O,O′,N]boranes 7(c) and 8(c) isomers, which do not display the intramolecular N→B coordination bond. The existence of steric interactions between N-benzyl and the alkyl group at 2 position was indicated by ¹H and ¹³C NMR, while, the δ(¹¹B) values confirm the tetrahedral and trigonal environment of the ¹¹B nucleus in these compounds. Moreover, the compounds were characterized by COSY, HETCOR and homonuclear proton decoupling experiment. The study of the intramolecular N→B coordination by dynamic NMR afforded a ΔG‡ value of 81.09 kJ/mol for compound 6(b).