Density functional theory calculation of molecular structures of (5656)macrotetracyclic 3d metal complexes with 4,12-Dithiooxo-1,8-dioxa-3,6,10,13-tetraazacyclotetradecanedione-5,11

The geometric parameters of macrotetracyclic Mn(II), Fe(II), Co(II), Ni(II), Cu(II), and Zn(II) complexes with the (NNNN) coordination formed by the reaction of corresponding hexacyanoferrates(II) with thiocarbamoylmethanamide H₂N-C(=S)-C(=O)-NH₂ and formaldehyde in gelatin-immobilized matrices have been calculated by the hybrid B3LYP density functional theory method with the use of the 6-31G(d) basis set and the Gaussian 03 program package. The bond lengths and bond and torsion angles in these complexes have been reported. It has been stated that the additional six-membered chelate rings resulting from template cross-linking are nonplanar and are turned at rather large angles to the two five-membered rings (which are also noncoplanar). In the Fe(II), Co(II), and Ni(II) complexes, the O1 and O2 atoms and both six-membered rings are located on one side of the (NNNN) plane of the donor nitrogen atoms, whereas in the Mn(II), Cu(II), and Zn(II) complexes, they are located on both sides of this plane.     

Structure of (5656)macrotetracyclic chelates in the ternary systems M(II)-ethanedithioamide-acetone (M = Mn, Fe, Co, Ni, Cu, Zn) according to DFT calculations

The thermodynamic and geometric parameters of M(II) macrotetracyclic chelates (M = Mn, Fe, Co, Ni, Cu, and Zn) with the (NNNN) coordination of the donor ligand sites, formed by the complexation reactions of corresponding M(II) compounds, ethanedithioamide H₂N-C(=S)-C(=S)-NH₂, and acetone H₃C-C(=O)-CH₃ in gelatin-immobilized matrix implants have been calculated by the OPBE/TZVP density functional theory method with the use of the Gaussian 09 program package. The bond lengths and bond and torsion angles in these complexes have been reported. It has been shown that despite the fact that the MN₄ chelate core in them is almost planar, the five- and six-membered chelate rings are pronouncedly non-coplanar. In the Mn(II), Fe(II), Co(II), and Ni(II) complexes, these chelate rings are pairwise identical, whereas in the Cu(II) and Zn(II) complexes, they are noticeably different.     

Calculation of geometric parameters of macrocyclic metal chelates formed by template synthesis in tertiary systems M(II) ion-ethanedithioamide-formaldehyde-ammonia

The geometric parameters of macrotricyclic Mn(II), Fe(II), Co(II), Ni(II), Cu(II), and Zn(II) complexes with 2,8-dithio-3,5,7-triazanonanedithioamide-1,9 with the (N,N,S,S) coordination of the chelant donor centers (formed by template synthesis in the M(II)-ethanedithioamide-formaldehyde-ammonia system) have been calculated by the hybrid B3LYP density functional theory method with the use of the 6-31G(d) basis set and the Gaussian 98 program package. The bond lengths and bond angles in the complexes with the MN₂S₂ coordination core have been reported. Calculations demonstrated that in none of the complexes are the five-membered chelate rings planar and that these rings in the Zn(II) complex are significantly different. For all M(II) ions under consideration, an additional six-membered chelate ring resulting from template cross-linking is turned at a rather large angle to the two five-membered rings and this ring itself is nonplanar.     

Molecular structures of (575)macrotricyclic 3<Emphasis Type="Italic">d</Emphasis>-metal chelates in M(II)–N-methylthiocarbohydrazide–hexanedione-2,5 according to density functional theory calculations

The geometric parameters of the molecular structures and thermodynamic parameters of macrotricyclic M(II) (M = Mn, Fe, Co, Ni, Cu, Zn) complexes with an MN₂S₂ chelate core formed by the template reactions of the M(II) with N-methylthiocarbohydrazide H₃C–HN–HN–C(=S)–NH–NH₂ and hexanedione- 2,5 H₃C–C(=O)–CH₂–CH₂–C(=O)–CH₃ have been calculated by the DFT method with the Gaussian09 program package. The bond lengths, bond angles, and some nonbonded angles in these complexes have been determined. In all the complexes, the M(II) central ion is pseudotetrahedrally coordinated by the donor atoms of an inner-sphere tetradentate ligand; the (N₂S₂) group of the donor atoms is not planar. The additional seven-membered chelate rings show significant deviations from coplanarity (>60°). The noncoplanatiry of the five-membered rings is less pronounced.     

Geometric parameters and energies of molecular structures of macrocyclic metal chelates in the ternary 3<Emphasis Type="Italic">d</Emphasis> M(II) ion-ethanedithioamide-ethanedial systems according to quantum-chemical DFT B3LYP calculations

The thermodynamic and geometric parameters of isomeric macrotricyclic Mn(II), Fe(II), Co(II), Ni(II), Cu(II), and Zn(II) complexes with the (NSSN) coordination of the ligand donor centers formed in the reaction of corresponding hexacyanoferrates(II) with ethanedithioamide H₂N-C(=S)-C(=S)-NH₂ and ethanedial HC(=O)-CH(=O) in gelatin-immobilized matrix implants have been calculated by the hybrid B3LYP density functional theory method with the use of the 6–31G(d) basis set and the Gaussian 03 program package. The bond lengths and bond and torsion angles in these complexes have been reported, and it has been stated that the Mn(II), Co(II), and Cu(II) complexes are nearly planar, the Fe(II) and Ni(II) complexes are slightly nonplanar, while the Zn(II) complex exhibits a rather considerable deviation from coplanarity. The additional five-membered chelate ring resulting from template cross-linking is almost planar in all cases.     

Quantum-chemical modeling of the molecular structures of (555)macrotricyclic chelates in M(II) ion–thiooxamide–glyoxal ternary systems (M = Mn,Fe, Co,Ni, Cu,Zn)

The thermodynamic and geometric parameters of isomeric macrotricyclic Mn(II), Fe(II), Co(II), Ni(II), Cu(II), and Zn(II) complexes that can form upon the complexation of the corresponding hexacyanoferrates( II) with thiooxamide H₂N–C(=S)–C(=O)–NH₂ and glyoxal HC(=O)–CH(=O) in gelatin-immobilized matrices have been calculated by the OPBE/TZVP DFT method with the use of the Gaussian09 program package. It has been found that a complex with the MN₄ chelate core is most stable for M = Mn, Fe, Co, Ni, and Zn, and the MN₂S₂ core is most stable for M = Cu. Bond lengths and bond angles have been reported, and it has been noted that in all complexes, except the Zn(II) one, the chelate core and three fivemembered chelate rings are almost planar.     

Models of molecular structures of macrocyclic metal chelates in the ternary 4<Emphasis Type="Italic">d</Emphasis> M(II) ion–ethanedithioamide–ethanedial systems according to quantum-chemical DFT calculations

The thermodynamic and geometric parameters of the molecular structures of macrotricyclic Tc(II), Ru(II), Rh(II), Pd(II), Ag(II), and Cd(II) complexes with the (NSSN)-coordination of the ligand donor sites formed by complexation of the corresponding M(II) ions with ethanedithioamide H₂N–C(=S)–C(=S)–NH₂ and ethanedial HC(=O)–CH(=O) have been calculated by the OPBE/TZVPQZP hybrid density functional theory method with the use of the Gaussian09 program package. The bond lengths and bond angles in these complexes have been reported, and it has been stated that the Rh(II) and Ag(II) complexes are nearly planar, the Tc(II), Pd(II), and Cd(II) complexes are slightly nonplanar, while the Ru(II) complex exhibits a rather considerable deviation from coplanarity. The additional five-membered chelate ring resulting from template cross-linking is either strictly planar (in the Tc(II), Rh(II), Pd(II), and Ag(II) complexes) or nearly planar (in the Ru(II) and Cd(II) complexes).     

Specifics of molecular structures of (565)macrotricyclic 3d-Metal chelates in the ternary systems M(II)-hydrazinecarbothioamide-2,4-Pentanedione according to DFT calculations

The geometric parameters of the molecular structures and thermodynamic parameters of formation of macrotricyclic M(II) complexes (M = Mn, Fe, Co, Ni, Cu, and Zn) with the MN₂S₂ coordination core formed by the reactions of corresponding hexacyanoferrates(II) with hydrazinecarbothioamide H₂N-HN-C(=S)-NH₂ and 2,4-pentanedione H₃C-C(=O)-CH₂-C(=O)-CH₃ in gelatin-immobilized matrix implants have been calculated by the B3LYP hybrid density functional theory method with the use of the 6-31G(d) basis set and the Gaussian 09 program package. The bond lengths and bond and torsion angles in these chelates have been reported. It has been shown that the Fe(II) and Ni(II) complexes are strictly planar, whereas the Mn(II), Co(II), and Cu(II) complexes are quasi-planar with a rather small deviation of the MN₂S₂ chelate core from coplanarity, and only the Zn(II) complex is pseudotetrahedral. The additional sixmembered chelate rings resulting from the above processes are almost planar in all chelates.     

DFT B3LYP calculation of the spatial structure of Co(II), Ni(II), and Cu(II) template complexes formed in ternary systems metal(II) ion-dithiooxamide-formaldehyde

The hybrid density functional theory B3LYP method with the 6-31G(d) basis set and the Gaussian 98 program has been used for calculating the geometric parameters of the Mn(II), Co(II), Ni(II), and Cu(II) complexes with NNSS-donor macrocyclic ligands forming in the course of template processes in the M(II)-dithiooxamide-formaldehyde systems. The bond lengths and bond angles in the complexes with the MN₂S₂ metal chelate core are reported. For all M(II) ions, the extra six-membered chelate ring that form as a result of template assembly is rotated through a rather large angle with respect to two five-membered rings and the ring itself is not planar.     

Models of Molecular Structures of “Template” (5676)Macrotetracyclic 3<Emphasis Type="Italic">d</Emphasis> M(II) Chelates with a 16-Membered Macrocyclic Ligand according to Density Functional Theory Data

The geometries of (5676)macrotetracyclic Mn(II), Fe(II), Co(II), Ni(II), Cu(II), and Zn(II) complexes with the (NNNN) coordination of the chelant donor sites, formed through template processes in the M(II)–3,3,8,8-tetramethyl-4,7-diazadecanedihydrazone-1,10-butanedione-2,3 systems have been calculated by the DFT OPBE/TZVP method with the Gaussian 09 program package. The bond lengths and angles and selected nonbonded angles in these complexes with the MN₄ chelate core have been determined. It has been demonstrated that none of the chelate rings is planar: the smallest deviation from coplanarity is always observed for the five-membered rings and the largest, for the six-membered rings not identical to each other. The seven-membered ring resulting from the template cross-linking exhibits deviations from coplanarity intermediate between those for the five- and six-membered rings.     

Quantum chemical calculation of the molecular structures of (666)macrotricyclic chelates of 3D elements in the M(II)-propanedithioamide-formaldehyde systems by the density functional theory method

The nonhybrid OPBE/TZVP density functional theory (DFT) method and the Gaussian09 program package were used to calculate the thermodynamic and geometric parameters of asymmetric macrocyclic M(II) complexes with three six-membered metal rings and (NNNN)-coordination of the donor sites of the ligand. The complexes are formed upon self-assembly (template synthesis) of hexacyanoferrates(II) of the corresponding M(II), propanedithioamide H₂N-C(=S)-CH₂-C(=S)-NH₂, and formaldehyde H₂C(=O) in gelatin-immobilized matrix implants. Note that complexes of this type are formed only for M = Ni, Cu, and Zn, while for M = Mn, Co, and Fe, these compounds are unstable. Bond lengths and bond and torsion angles are presented. In each of these complexes, both the MN₄ chelate units and the N₄ units and all sixmembered metal rings were found to be non-coplanar.     

Molecular structure and thermodynamic parameters of (5656)macrotetracyclic chelates in the 3d-element(ii) ion-hydrazinomethanethiohydrazide-2,3-butanedione ternary system according to density functional quantum-chemical calculations

The thermodynamic and geometric parameters of the macrocyclic chelates of Mn(II), Fe(II), Co(II), Ni(II), Cu(II), and Zn(II) with the (NNNN) coordination of the ligand donor centers formed upon complexation between the above metal ions, hydrazinomethanethiohydrazide (H₂N-HN-C(=S)-NH-NH₂), and 2,3-butanedione (H₃C-C(=O)-C(=O)-CH₃) in gelatin-immobilized matrix implants were calculated by the B3LYP 6–31G(d) density functional theory method with the use of the Gaussian 09 program package. The bond lengths, valence angles, and torsion angles were reported, and it was noted that the complexes of Fe(II), Co(II), Ni(II), and Cu(II) are almost planar, whereas the complexes of Mn(II) and Zn(II) have a quasi-pyramidal structure of the chelate unit. The additional six-membered metallocycles resulting from template cross-linking, as well as five-membered rings, are almost planar.     

Quantum-chemical calculation of steric structure of the complexes formed at template synthesis in three-component systems of Co(II) [Ni(II), Cu(II)] ion-bithiooxamide-acetone

By means of hybrid method of the density functional B3LYP with 6-31G(d) basis set we carried out calculation of geometric parameters of Co(II), Co(III), Ni(II) and Cu(II) complexes with macrocyclic ligand formed at the template processes in the systems M(II)-dithiooxamide-acetone with NNSS-coordination of donor centers. Atomic coordinates, bond lengths, bond angles and dihedral angles in the complexes with metallochelate node MN₂S₂ are listed. In the cases of Ni(II) and Cu(II) this chelate node is practically planar while in the case of Co(II) is tetrahedral. An additional six-membered metallocycle formed as a result of template “stitching” is screwed and turned by enough significant angle relative to five-membered rings.     

Stabilization of the trivalent oxidation state of copper by tetradentate imine–oxime ligands

Copper(III) complexes stabilized by tetradentate imine–oxime ligands were characterized by elemental analysis, cyclic voltammetry, u.v.–visible, and e.s.r. spectra. Electrode potentials of copper(III/II) couples having five-, six-, five-membered chelate rings are pH-dependent. Copper(III/II) couples with five-, five-, five-membered chelate rings were independent of pH. The magnitude of E _1/2 ⁰ is affected by both the size and electron-donor ability of substituent groups.     

Characterization of Copper(II), nickel(II), cobalt(II) and palladium(II) complexes of vicinal oxime-imine ligands; induced chelate isomerism in the same molecule of the nickel(II) complex

Summary Metal complexes of the title ligands were characterized in order to determine the factors influencing the stability of chelate isomerism in the same molecule. The ligands were prepared by 1:1 condensation of isonitrosoacetylacetone (Hiso) with eithero-aminophenol (H₂ isoaph),p-aminophenol (H₂ isopph), or aniline (Hisoanil). The following complexes have been synthesized: [(isoaph)Cu]₄, (Hisoaph)₂Co, (Hisopph)₂ M·nH₂O (M=Ni(II), n=2;M=Pd(II), n=0;M=Co(II), n=2), [(isopph) Cu·H₂O]₂, and (isoanil)₂ M (M=Ni(II), Cu(II), Co(II), or Pd(II)). Both chelate rings in these metal complexes are five-membered. Transimination of one –C=N–C₆H₅ group to –C=NH in (isoanil)₂Ni produced a six-membered chelate ring in (isoim)Ni(isoanil). The induced chelate isomerism is ascribed to intermolecular hydrogen bonding of the imino-hydrogen and the basic nitrogen of the same six-membered chelate ring of an adjacent square planar molecule. Other types of hydrogen bondings with the oximato oxygen (intra- or intermolecular) favour the formation of five-membered chelate rings. Analytical, spectroscopic, and magnetic moment data are in accordance with the suggested formulations.Part of the Ph.D. thesis of Sana M. Imam     

Molecular structures of (555)macrotricyclic chelates appearing in 3d-element(ii) ion-hydrazinomethanethioamide-ethanedial systems according to density functional theory calculations

Thermodynamic and geometric parameters have been calculated using the hybrid density functional theory method B3LYP with the 6-31G(d) basis set and the Gaussian03 program for the macrotricyclic complexes of Mn(II), Fe(II), Co(II), Ni(II), Cu(II), and Zn(II) with an (NSSN)-coordinated ligand that can result from the complexation of metal hexacyanoferrates(II) with hydrazinomethanethioamide H₂N-HN-C(=S)-NH₂ and ethanedial HC(=O)-CH(=O) in gelatin-immobilized matrix implants. Bond lengths and valence and torsion angles in these complexes are reported. The Ni(II) and Cu(II) complexes are practically planar. The Mn(II), Fe(II), and Co(II) complexes are characterized by a small deviation from coplanarity, and the Zn(II) complex is noticeably noncoplanar. The additional five-membered metallacycle resulting from template ??joining?? is nearly planar in all complexes.     

Comparative stability of isomeric (565)macrotricyclic chelates of 3d-elements formed in the systems M(II)-thiosemicarbazide-formaldehyde according to DFT B3LYP data

Comparative stability of three types of (565)macrotricyclic chelates of Mn(II), Fe(II), Co(II), Ni(II), Cu(II), and Zn(II) with chelate nodes MN₂S₂ and MN₄ have been analyzed by means of hybrid density functional method B3LYP with the 6-31G(d) basis set using GAUSSIAN-09 software. These chelates may potentially be formed in template interaction between gelatin-immobilized hexacyanoferrate(II) of respective metal ions M(II), thiosemicarbazide H₂N-HN-C(=S)-NH₂, and formaldehyde H₂C=O. It has been demonstrated that for all M(II) considered, the complex with chelate nodes MN₂S₂ is more stable. Key structural parameters of the complexes (bond lengths, bond and torsion angles) are presented. It is noted that pseudotetrahedral coordination of ligand donor centers around M(II) is typical for Mn(II), Co(II), Cu(II), and Zn(II), whereas for Fe(II) and Ni(II) it is almost planar. Values of standard enthalpy ΔH _f,298 ⁰ and standard Gibbs energy ΔG _f,298 ⁰ are positive for nearly all the complexes studied.     

Quantum-chemical calculation of molecular structures of (5656)macrotetracyclic 3d-metal complexes “self-assembled” in quaternary systems M(II) ion-ethanedithioamide-formaldehyde-ammonia by the density functional theory method

The geometric parameters of (5656)macrotetracyclic complexes of Mn(II), Fe(II), Co(II), Ni(II), Cu(II), and Zn(II) with the NNNN-coordination of donor sites of the chelant formed by the template reactions in the M(II)-ethanedithioamide-formaldehyde-ammonia systems have been calculated by the OPBE/TZVP hybrid density functional theory (DFT) method with the use of the Gaussian09 program package. In all complexes, five-membered chelate rings (almost identical to each other in each complex) are nonplanar. For all M(II) ions under consideration, two additional six-membered nonplanar chelate rings formed as a result of template “cross-link” are turned at considerable angles with respect to the five-membered rings. The six-membered rings are located on different sides of the NNNN plane of the nitrogen donor atoms.     

Thin-layer chroamtography of pt-metals complexes with ketoanils: Analysis and effect of chelate ring contraction on RF values

Summary Thin-Layer chromatogrtaphy on silica gel was used for the separation of platinum group metal complexes using one-, two-, and three-component solvent systems. In octahedral and square planar, cationic complexes, containing two identical five-membered chelate rings formed by three different ketoanils, a linear dependence on chelate ring contraction (and also metal-ligand bond frequencies and ligand field parameters) of their R_F values has been established in one-component solvent systems.     

Crystal structures of two copper(II) complexes with <Emphasis Type="Italic">N,N</Emphasis>-diethylbenzhydrazide

The copper(II) complexes with N,N-diethylbenzhydrazide, [Cu(C₆H₅CONHN(C₂H₅)₂)]Cl₂ (I) and Cu(C₆H₅CONN(C₂H₅)₂)₂ (II), have been studied by X-ray diffraction analysis. In the both compounds, the reactant acts as a bidentate (O, N(2)) ligand, forming five-membered chelate rings with copper. In cationic complex I, the O→Cu and N→Cu bond lengths are 1.954(2) and 2.070(3) Å, respectively, and the O(1)CuN(2) chelate angle is 81.89(10°. The Cl^? ions are in the coordination sphere of copper (Cu-Cl, 2.1974(11) and 2.2178(10) Å). The chelate ring has an envelope conformation with the copper atom in the flap position. The coordination polyhedron of the copper atom is a strongly distorted tetrahedron. Neutral complex II is an inner complex salt. The reactant forms with copper two planar chelate rings. The Cu-O and N→Cu bond lengths are 1.8901(9) and 2.0175(11) Å, respectively, and the O(1)CuN(2) chelate cycle is 83.70(4)°. Complex II is planar, and the coordination polygon of the copper atom is a parallelogram. The thermal stability of complexes I and II has been studied.