Kinetics, mechanism, and thermochemistry of the gas phase reaction of atomic chlorine with dimethyl sulfoxide

A laser flash photolysis-resonance fluorescence technique has been employed to study the kinetics of the reaction of chlorine atoms with dimethyl sulfoxide (CH3S(O)CH3; DMSO) as a function of temperature (270-571 K) and pressure (5-500 Torr) in nitrogen bath gas. At T = 296 K and P > or = 5 Torr, measured rate coefficients increase with increasing pressure. Combining our data with literature values for low-pressure rate coefficients (0.5-3 Torr He) leads to a rate coefficient for the pressure independent H-transfer channel of k1a = 1.45 x 10(-11) cm3 molecule(-1) s(-1) and the following falloff parameters for the pressure-dependent addition channel in N2 bath gas: k(1b,0) = 2.53 x 10(-28) cm6 molecule(-2) s(-1); k(1b,infinity) = 1.17 x 10(-10) cm3 molecule(-1) s(-1), F(c) = 0.503. At the 95% confidence level, both k1a and k1b(P) have estimated accuracies of +/-30%. At T > 430 K, where adduct decomposition is fast enough that only the H-transfer pathway is important, measured rate coefficients are independent of pressure (30-100 Torr N2) and increase with increasing temperature. The following Arrhenius expression adequately describes the temperature dependence of the rate coefficients measured at over the range 438-571 K: k1a = (4.6 +/- 0.4) x 10(-11) exp[-(472 +/- 40)/T) cm3 molecule(-1) s(-1) (uncertainties are 2sigma, precision only). When our data at T > 430 K are combined with values for k1a at temperatures of 273-335 K that are obtained by correcting reported low-pressure rate coefficients from discharge flow studies to remove the contribution from the pressure-dependent channel, the following modified Arrhenius expression best describes the derived temperature dependence: k1a = 1.34 x 10(-15)T(1.40) exp(+383/T) cm3 molecule(-1) s(-1) (273 K < or = T < or = 571 K). At temperatures around 330 K, reversible addition is observed, thus allowing equilibrium constants for Cl-DMSO formation and dissociation to be determined. A third-law analysis of the equilibrium data using structural information obtained from electronic structure calculations leads to the following thermochemical parameters for the association reaction: delta(r)H(o)298 = -72.8 +/- 2.9 kJ mol(-1), deltaH(o)0 = -71.5 +/- 3.3 kJ mol(-1), and delta(r)S(o)298 = -110.6 +/- 4.0 J K(-1) mol(-1). In conjunction with standard enthalpies of formation of Cl and DMSO taken from the literature, the above values for delta(r)H(o) lead to the following values for the standard enthalpy of formation of Cl-DMSO: delta(f)H(o)298 = -102.7 +/- 4.9 kJ mol(-1) and delta(r)H(o)0 = -84.4 +/- 5.8 kJ mol(-1). Uncertainties in the above thermochemical parameters represent estimated accuracy at the 95% confidence level. In agreement with one published theoretical study, electronic structure calculations using density functional theory and G3B3 theory reproduce the experimental adduct bond strength quite well.     

Theoretical study on the gas phase reaction of acrylonitrile with atomic hydrogen

The complex potential energy surface of the H + CH₂=CHCN reaction has been investigated at the BMC-CCSD level based on the geometric parameters optimized at the BHandHLYP/6-311++G(d,p) level. This reaction is revealed to be one of the significant loss processes of acrylonitrile. The BHandHLYP and M05-2X methods are employed to obtain initial geometries. The reaction mechanism confirms that H can attack on the C=C double bond or C and N atom of –CN group to form the chemically activated adducts IM1 (CH₃CHCN), IM2 (CH₂CH₂CN), IM3′ (CH₂=CHCHN) and IM5 (CH₂=CHCNH), and direct H-abstraction paths may also occur. Temperature- and pressure-dependent rate constants have been carried out using Rice–Ramsperger–Kassel–Marcus theory with tunneling correction. IM1 (CH₃CHCN) formed by collisional stabilization is the major product at the 760 Torr pressure of H₂ and in the temperature range (200–1,600 K); whereas the production of IM2 (CH₂CH₂CN) is the main channel at 1,600–3,000 K. The calculated rate constants are in good agreement with the experimental data.     

Theoretical study of the reaction of Sc with SCO in gas phase

In order to elucidate the mechanism of reaction M⁺ + SCO, both triplet and singlet potential energy surfaces (PESs) for the reaction of Sc⁺ + SCO have been theoretically investigated using the DFT (B3LYP/6-311+G*) level of theory. The geometries for reactants, intermediates, transition states and products were completely optimized. All the transition states were verified by the vibrational analysis and the intrinsic reaction coordinate calculations. The involving potential energy curve-crossing dramatically affects reaction mechanism, reaction rate has been discussed, and the crossing points (CPs) have been localized by the approach suggested by Yoshizawa et al. The present results show that the reaction mechanism are insertion–elimination mechanism both along the C–S and C–O bond activation branches, but the C–S bond activation is much more favorable in energy than the C–O bond activation. All theoretical results not only support the existing conclusions inferred from early experiment, but also complement the pathway and mechanism for this reaction.     

Theoretical studies on the reaction of pentafulvenone with water in gas phase and aqueous solvent

In gas phase, the hydrations of pentafulvenone to generate three types of cyclopentadienyl carboxylic acids are studied theoretically at the MP2/6-311+G**//B3LYP/6-311+G** level. A water molecule attacking the C=O double bond of pentafulvenone can yield cyclopentadienyl carboxylic acids via the formation of fulvenediols, and attacking the C=C double bond of pentafulvenone can directly yield cyclopentadienyl carboxylic acid. The barriers of rate-determining transition states are 42.2 and 30.4 kcal mol⁻¹, respectively. The barriers of rate-determining transition states for two water molecules system are 20.2 and 19.6 kcal mol⁻¹, respectively. The products can isomerize to each other. In aqueous solvent, the hydrations of pentafulvenone are investigated using PCM-UAHF model at the MP2 (PCM)/6-311+G**// B3LYP (PCM)/6-311+G** and MP2 (PCM)/6-311+G**// B3LYP/6-311+G** levels. The barriers of all rate-determining transition states are decreased. The added water molecule acts as catalyst in both gas phase and aqueous solvent. Electronic Supplementary Material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Theoretical study on the gas phase reaction of acrylonitrile with a hydroxyl radical

The mechanism and kinetics of the reaction of acrylonitrile (CH(2)=CHCN) with hydroxyl (OH) has been investigated theoretically. This reaction is revealed to be one of the most significant loss processes of acrylonitrile. BHandHLYP and M05-2X methods are employed to obtain initial geometries. The reaction mechanism conforms that OH addition to C[double bond, length as m-dash]C double bond or C atom of -CN group to form the chemically activated adducts, 1-IM1(HOCH(2)=CHCN), 2-IM1(CH(2)=HOCHCN), and 3-IM1(CH(2)=CHCOHN) via low barriers, and direct hydrogen abstraction paths may also occur. Temperature- and pressure-dependent rate constants have been evaluated using the Rice-Ramsperger-Kassel-Marcus theory. The calculated rate constants are in good agreement with the experimental data. At atmospheric pressure with N(2) as bath gas, 1-IM1(OHCH(2)=CHCN) formed by collisional stabilization is the major product in the temperature range of 200-1200 K. The production of CH(2)CCN and CHCHCN via hydrogen abstractions becomes dominant at high temperatures (1200-3000 K).     

Theoretical study on the gas phase reaction of propargyl alcohol with hydroxyl radical

The reaction of propargyl alcohol with hydroxyl radical has been studied extensively at CCSD(T)/aug‐cc‐pVTZ//MP2/cc‐pVTZ level. This is the first time to gain a conclusive insight into the reaction mechanism and kinetics for this important reaction in detail. Two reaction mechanisms were revealed, namely addition/elimination and hydrogen abstraction mechanism. The reaction mechanism confirms that OH addition to C?C triple bond forms the chemically activated adducts, IM1 (·CHCOHCH₂OH) and IM2 (CHOH·CCH₂OH), and the hydrogen abstraction pathways (? CH₂OH bonded to the carbon atom and alcohol hydrogen) may occur via low barriers. Harmonic model of Rice–Ramsperger–Kassel–Marcus theory and variational transition state theory are used to calculate the overall and individual rate constants over a wide range of temperatures and pressures. The calculated rate constants are in good agreement with the experimental data. At atmospheric pressure with Ar as bath gas, IM1 (·CHCOHCH₂OH) and IM2 (CHOH·CCH₂OH) formed by collisional stabilization are dominant in the low temperature range. The production of CHCCHOH + H₂O via hydrogen abstraction becomes dominate at higher temperature. The fraction of IM3 (CH₂COHCH₂·O) is very significant over the moderate temperature range. © 2014 Wiley Periodicals, Inc.     

Theoretical study on the gas phase reaction mechanism of acetylene with nitrous oxide

The reaction mechanism of C₂H₂ and N₂O on the singlet potential energy surface is investigated in this study, at the B3LYP/6-311++G(3df,3pd), MP2/6-311++G(d,p), and CCSD(T) levels of theory. We have obtained three kinds of products in both methods, B3LYP and MP2, which have enough thermodynamic stability. The results reveal that the product P1, CH₂CO + N₂, is spontaneous and exothermic with ?86.176 and ?83.149 kcal/mol in Gibbs free energy and enthalpy of reaction at the MP2 level, respectively. Hence, the product P1 is thermodynamically the most favored adduct of the C₂H₂ + N₂O gas phase reaction at atmospheric pressure and 298.15 K temperature.     

Computational study of the reaction of atomic oxygen with acetone in the gas phase

Mechanisms and kinetics of the reaction of atomic oxygen with acetone have been investigated using ab initio quantum chemistry methods and transition state theory. The structures of the stationary points along the possible reaction pathways were obtained using the second-order M?ller-Plesset theory and the coupled-cluster theory with single and double excitations with the triple-zeta quality basis sets. The energetics of the reaction pathways were calculated at the reduced second-order Gaussian-3 level and the extrapolated full coupled-cluster/complete basis set limit. The rate coefficients were calculated in the temperature range 200-3000 K, with the detailed consideration of the hindered internal rotation and the tunneling effect using Eckart and the semiclassical WKB approximations. It is shown that the predominant mechanism is the direct hydrogen abstraction producing hydroxyl and acetonyl radicals. Although the nucleophilic OC addition/elimination channel leading to CH3 and CO2 involves comparable barrier with the direct hydrogen abstraction channel, kinetically it cannot play any role in the overall reaction. It is predicted that the rate coefficients show positive temperature dependence in the range 200-3000 K and strong non-Arrhenius behavior. The tunneling effect plays a significant role. Moreover, the reaction has strong kinetic isotope effect. The calculated results are in good agreement with the available experimental data. The present rigorous theoretical work is helpful for the understanding of the characteristics of the reaction of atomic oxygen with acetone.     

Theoretical study of the reaction of Cr+ with SCO in gas phase

To elucidate the mechanism of reaction M⁺ + SCO, the reaction of Cr⁺ + SCO has been investigated using density functional theory (DFT) with the popular hybrid functional, B3LYP, in conjunction with 6‐311+G* basis set on both the sextet and quartet potential energy surfaces (PESs). To obtain an accurate evaluation of the activation barrier and reaction energy, the coupled cluster single‐point calculations using the B3LYP structures is performed. The crossing points (CPs) of the different PESs have been localized with the approach suggested by Yoshizawa and colleagues. The involving potential energy curve‐crossing dramatically affects reaction mechanism. The present results show that the reaction mechanism is insertion‐elimination mechanism both along the C? S and C? O bond activation branches, but the C? S bond activation is much more favorable than the C? O bond activation in energy. All theoretical results not only support the existing conclusions inferred from early experiment study, but also complement the pathway and mechanism for this reaction. © 2007 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

Theoretical study on the reaction mechanism of VO2+ with propyne in gas phase

Possible molecular mechanisms of the gas-phase ion/molecule reaction of VO2+ in its lowest singlet and triplet states (1A1/3A' ') with propyne have been investigated theoretically by density functional theory (DFT) methods. The geometries, energetic values, and bonding features of all stationary and intersystem crossing points involved in the five different reaction pathways (paths 1-5), in both high-spin (triplet) and low-spin (singlet) surfaces, are reported and analyzed. The oxidation reaction starts by a hydrogen transfer from propyne molecule to the vanadyl complex, followed by oxygen migration to the hydrocarbon moiety. A hydride transfer process to the vanadium atom opens four different reaction courses, paths 1-4, while path 5 arises from a hydrogen transfer process to the hydroxyl group. Five crossing points between high- and low-spin states are found: one of them takes place before the first branching point, while the others occur along path 1. Four different exit channels are found: elimination of hydrogen molecule to yield propynaldehyde and VO+ (1Sigma/3Sigma); formation of propynaldehyde and the moiety V-(OH2)+; and two elimination processes of water molecule to yield cationic products, Prod-fc+ and Prod-dc+ where the vanadium atom adopts a four- and di-coordinate structure, respectively.     

Theoretical study on the reaction of methane and zinc oxide in gas phase

The mechanism of the reaction between CH₄ and ZnO has been studied theoretically at the CCSD(T)//B3LYP/6-311++G(2d,2p) levels. Four possible reaction pathways, yielding three products of syngas, HCHO and CH₃OH, respectively, have been evaluated. All the four pathways are predicted to occur via the formation of CH₄ZnO molecular complex with two H atoms of CH₄ approaching to the Zn end of ZnO. From this complex, the insertion of ZnO into the CH bond of CH₄ might proceed through two concerted manners along with charge transfer process. The pathway corresponding to the production of syngas is energetically feasible, in which the cleavage of CH and ZnH bonds with the formation of H₂ molecule is predicted to be the rate-limiting-step with the energy barrier of 45.4 kcal/mol.     

Kinetics and mechanism of the gas phase reaction of chlorine atoms with i-propanol

FTIR smog chamber techniques and ab initio calculations have been used to investigate the kinetics and mechanism of the reaction of Cl atoms with i-propanol in 700 Torr of N(2) at 296 K. The reaction is observed to proceed with a rate constant of k(1) = (8.28 +/- 0.97) x 10(-11) cm(3) molecule(-1) s(-1) and gives CH(3)C(OH)CH(3) and CH(3)CH(OH)CH(2) radicals in yields of 85 +/- 7 and 15 +/- 7%, respectively. Calculations indicate that abstraction of the secondary H can proceed through a lower energy pathway than the primary. Rapid decomposition of the chlorination product CH(3)CCl(OH)CH(3) complicates its direct detection, likely due to heterogeneous chemistry. IR spectra for the chlorides CH(3)CCl(OH)CH(3) and CH(3)CH(OH)CH(2)Cl were inferred experimentally and assignments confirmed via comparison with ab initio computed spectra.     

Preferential solvation of lysozyme by dimethyl sulfoxide in binary solutions of water and dimethyl sulfoxide

To reveal the denaturation mechanism of lysozyme by dimethyl sulfoxide (DMSO), thermal stability of lysozyme and its preferential solvation by DMSO in binary solutions of water and DMSO was studied by differential scanning calorimetry (DSC) and using densities of ternary solutions of water (1), DMSO (2) and lysozyme (3) at 298.15 K. A significant endothermic peak was observed in binary solutions of water and DMSO except for a solution with a mole fraction of DMSO (x ₂) of 0.4. As x ₂ was increased, the thermal denaturation temperature T _m decreased, but significant increases in changes in enthalpy and heat capacity for denaturation, ΔH _cal and ΔC _p, were observed at low x ₂ before decreasing. The obtained amount of preferential solvation of lysozyme by DMSO (∂g ₂/∂g ₃) was about 0.09 g g⁻¹ at low x ₂, indicating that DMSO molecules preferentially solvate lysozyme at low x ₂. In solutions with high x ₂, the amount of preferential solvation (∂g ₂/∂g ₃) decreased to negative values when lysozyme was denatured. These results indicated that DMSO molecules do not interact directly with lysozyme as denaturants such as guanidine hydrochloride and urea do. The DMSO molecules interact indirectly with lysozyme leading to denaturation, probably due to a strong interaction between water and DMSO molecules.     

Oxidation of dimethyl sulfoxide with hydrogen peroxide in the presence of potassium hydroxide

Kinetic relationships in oxidation of DMSO to dimethyl sulfone with hydrogen peroxide in the presence of potassium hydroxide were studied. Kinetic parameters of the process were calculated. It was established that the reaction proceeded through the intermediate formation of potassium hydroperoxide.     

Temperature-dependent kinetics of the simplest Criegee intermediate reaction with dimethyl sulfoxide

Criegee intermediates are thought to play roles in atmospheric chemistry, including OH radical formation, oxidation of SO₂, NO₂, etc. CH₂OO is the simplest Criegee intermediate, of which the reactivity has been a hot topic. Here we investigated the kinetics of CH₂OO reaction with dimethyl sulfoxide (DMSO) under 278–349 K and 10–150 Torr. DMSO is an important species formed in the oxidation of dimethyl sulfide in the biogenic sulfur cycle. The concentration of CH₂OO was monitored in real-time via its mid-infrared absorption band at about 1,286 cm⁻¹ (Q branch of the ν₄ band) with a high-resolution quantum cascade laser spectrometer. The 298 K bimolecular rate coefficient was determined to be k₂₉₈ = (2.3 ± 0.3) × 10⁻¹² cm³/s at 30 Torr with an Arrhenius activation energy of −3.9 ± 0.2 kcal/mol and a weak pressure dependence for pressures higher than 30 Torr (k₂₉₈ = (2.8 ± 0.3) × 10⁻¹² cm³/s at 100 Torr). The reaction is speculated to undergo a five-membered ring intermediate, analogous to that of CH₂OO with SO₂. The negative activation energy indicates that the rate-determining transition state is submerged. The magnitude of the reaction rate coefficient lies in between those of CH₂OO reactions with (CH₃)₂CO and with SO₂.     

Theoretical study on mechanism of reaction between tert-butyl isocyanide and dimethyl acetylenedicarboxylate in presence of ethanethiol or thiophenol

Research on Chemical Intermediates - The mechanism of the multicomponent reaction between tert-butyl isocyanide and dimethyl acetylenedicarboxylate in presence of ethanethiol and thiophenol (as...     

Variational transition-state theory study of the dimethyl sulfoxide (DMSO) and OH reaction

The mechanism for the atmospheric oxidation of DMSO has been studied. For the first time, all the possible channels in the DMSO + OH reaction are studied together theoretically, and their corresponding rate constants have been evaluated under the variational transition-state formalism. Three different channels have been characterized: an addition-elimination process to form MSIA (CH3SOOH) and CH3, a H-abstraction pathway to give CH3SOCH2 and H2O, and a nonkinetically relevant S(N)2-type reaction to form methanol and CH3SO. In agreement with previous experimental and theoretical works, the main product in the DMSO + OH reaction turns out to be the MSIA, with a branching ratio at 298.15 K around 97%. The effects of pressure in the global rate constant have also been analyzed.     

Reinvestigation of the photolysis of aryl-substituted disilanes in the presence of dimethyl sulfoxide

The photolysis of aryl-substituted disilanes in the presence of dimethyl sulfoxide has been studied. Product studies, labelling experiments, and quantum yields have been carried out. Possible mechanisms are discussed.