Hydrogen adsorption in defected carbon nanotubes

Recently there has been lot of interest in the development of hydrogen storage in various systems for the large-scale application of fuel cells, mobiles and for automotive uses. Hectic materials research is going on throughout the world with various adsorption mechanisms to increase the storage capacity. It was observed that physisorption proves to be an effective way for this purpose. Some of the materials in this race include graphite, zeolite, carbon fibers and nanotubes. Among all these, the versatile material carbon nanotube (CNT) has a number of favorable points like porous nature, high surface area, hollowness, high stability and light weight, which facilitate the hydrogen adsorption in both outer and inner portions. In this work we have considered armchair (5,5), zig zag (10,0) and chiral tubes (8,2) and (6,4) with and without structural defects to study the physisorption of hydrogen on the surface of carbon nanotubes using DFT calculations. For two different H₂ configurations, adsorption binding energies are estimated both for defect free and defected carbon nanotubes. We could observe larger adsorption energies for the configuration in which the hydrogen molecular axis perpendicular to the hexagonal carbon ring than for parallel to C–C bond configuration corresponding to the defect free nanotubes. For defected tubes the adsorption energies are calculated for various configurations such as molecular axis perpendicular to a defect site octagon and parallel to C–C bond of octagon and another case where the axis perpendicular to hexagon in defected tube. The adsorption binding energy values are compared with defect free case. The results are discussed in detail for hydrogen storage applications.     

Testing the pairwise additive potential approximation using DFT: coadsorption of CO and N on Rh (100).

The interaction between adsorbates is a key issue in surface science, because these interactions can influence strongly the properties of chemisorbed species with consequences for the thermodynamics and kinetics of surface processes. The simplest representation of adsorbate-adsorbate interactions is based on the assumption that all interactions are pairwise additive. This approach has been satisfactorily used in the modeling of temperature-programmed desorption (TPD) spectra using both continuum and Monte Carlo methods. However, the energies estimated within the pairwise approximation have never been compared to the energies calculated using density functional theory (DFT) methods. We demonstrate that the pairwise additive potential approximation is indeed a good representation of the adsorbate-adsorbate interactions, and that we do not need to include three-body interactions or higher-order terms to estimate the perturbation of the adsorption energy of an adsorbate by the presence of other coadsorbates. Moreover, we show for the first time how DFT can be used to explain the desorption features that one finds in TPD experiments, thus linking the TPD desorption features with actual microscopic configurations.     

Density functional theory study of pyrrole adsorption on Mo(110)

The objective of the present study is to identify possible adsorption configurations of pyrrole on Mo(110) using density functional theory (DFT) calculations. Several adsorption configurations were studied including pyrrole and pyrrolyl adsorption as parallel, perpendicular, and tilted adsorption modes relative to the Mo(110) surface plane. Based on the DFT calculations, pyrrole is suggested to adsorb in a parallel mode with respect to the Mo(110) surface through its pi-orbital as mu3,eta(5)-Pyr-0 degrees with an adsorption energy of -28.7 to -31.5 kcal mol(-1). The possibility of a coexisting mode where pyrrole adsorbs on the surface with a slightly tilted molecular plane as mu3,eta(4)(N,C2,C3,C4)-Pyr-5 degrees is also likely to occur, particularly at higher pyrrole coverages. The slightly tilted configuration is suggested to arise from the lateral interactions of adsorbed pyrrole on Mo(110), and not the result of a phase transformation on the surface since this requires a relatively high activation energy as indicated by additional linear synchronous transit (LST)/quadratic synchronous transit (QST) calculations. Both adsorption geometries bond to three surface Mo atoms, and Mo(110) did not promote hydrogen abstraction. Pyrrolyl adsorption on Mo(110) is energetically possible, but unlikely to occur because gas-phase hydrogen has not been previously experimentally observed as a pyrrole decomposition product on Mo(110).     

Noncovalent interactions between cisplatin and graphene prototypes

Cisplatin (CP) has been widely used as an anticancer drug for more than 30 years despite severe side effects due to its low bioavailability and poor specificity. For this reason, it is paramount to study and design novel nanomaterials to be used as vectors capable to effectively deliver the drug to the biological target. The CP square‐planar geometry, together with its low water solubility, suggests that it could be possibly easily adsorbed on 2D graphene nanostructures through the interaction with the related highly conjugated π‐electron system. In this work, pyrene has been first selected as the minimum approximation to the graphene plane, which allows to properly study the noncovalent interactions determining the CP adsorption. In particular, electronic structure calculations at the MP2C and DFT‐SAPT levels of theory have allowed to obtain benchmark interaction energies for some limiting configurations of the CP–pyrene complex, as well as to assess the role of the different contributions to the total interaction: it has been found that the parallel configurations of the aggregate are mainly stabilized around the minimum region by dispersion, in a similar way as for complexes bonded through π‐π interactions. Then, the benchmark interaction energies have been used to test corresponding estimations obtained within the less expensive DFT to validate an optimal exchange‐correlation functional which includes corrections to take properly into account for the dispersion contribution. Reliable DFT interaction energies have been therefore obtained for CP adsorbed on graphene prototypes of increasing size, ranging from coronene, ovalene, and up to C₁₅₀H₃₀. Finally, DFT geometry optimizations and frequency calculations have also allowed a reliable estimation of the adsorption enthalpy of CP on graphene, which is found particularly favorable (about −20 kcal/mol at 298 K and 1 bar) being twice that estimated for the corresponding benzene adsorption. © 2017 Wiley Periodicals, Inc.     

Optimal covering of C(60) fullerene by rare gases

Putative global energy minima of clusters formed by the adsorption of rare gases on a C(60) fullerene molecule, C(60)X(N) (X=Ne, Ar, Kr, Xe; N ≤ 70), are found using basin-hopping global optimization in an empirical potential energy surface. The association energies per rare gas atom as a function of N present two noticeable minima for Ne and Ar and just one for Kr and Xe. The minimum with the smallest N is the deepest one and corresponds to an optimal packing monolayer structure; the other one gives a monolayer with maximum packing. For Kr and Xe, optimal and maximum packing structures coincide. By using an isotropic average form of the X-C(60) interaction, we have established the relevance of the C(60) surface corrugation on the cluster structures. Quantum effects are relevant for Ne clusters. The adsorption of these rare gases on C(60) follows patterns that differ significantly from the ones found recently for He by means of experimental and theoretical methods.     

A theoretical study on the cyclopropane adsorption onto the copper surfaces by density functional theory and quantum chemical molecular dynamics methods

We report a theoretical study on the cyclopropane adsorption onto Cu(1 1 1) surfaces by density functional theory (DFT) and quantum chemical molecular dynamics methods. The equilibrium geometry of the physisorbed species was obtained using both periodic and cluster models by DFT methods that employ Cambridge serial total energy package (CASTEP), DMol ab initio quantum chemistry software of Accelrys’ materials studio (DMol), and Amsterdam density functional (ADF) program. It was found that the adsorbate molecule was tilted towards the metal surface with one C---C bond (upwards) parallel to the surface and that the physisorption occurred via a third carbon atom pointing (downwards) towards the surface. The electronic distribution and geometrical structure of physisorbed cyclopropane were slightly deviated from its gas phase molecule. The calculated vibrational frequencies and adsorption energies are close to experimental data, confirming the reliability of our DFT results. The adsorption process was simulated using our novel tight-binding quantum chemical molecular dynamics program, ‘Colors’. The calculation results indicated that both the adsorption and desorption processes of cyclopropane took place molecularly. The electron transfer and structural properties of equilibrium position obtained by ‘Colors’ are consistent with those by the first principles DFT methods.     

A new method for direct calculation of total energy of protein

A new scheme is developed for efficient quantum mechanical calculation of total energy of protein based on a recently developed MFCC (molecular fractionation with conjugate caps) approach. In this scheme, the linear-scaling MFCC method is first applied to calculate total electron density of protein. The computed electron density is then employed for direct numerical integration in density functional theory (DFT) to yield total energy of protein, with the kinetic energy obtained by a proposed ansatz. Numerical studies are carried out to calculate torsional energies of two polypeptides using this approach and the energies are shown to be in good agreement with the corresponding full system DFT calculation.     

Studies of chemisorbed tetracene on si(111)-7x7

The chemisorption of tetracene on the Si(111)-7x7 surface was studied using scanning tunneling microscopy (STM) and density functional theory (DFT) calculations. On the basis of the STM results and dimension analysis, two types of binding configurations were proposed. One of the configurations involves the di-sigma reaction between two C atoms of an inner ring with an adatom-rest atom pair on the substrate to give rise to an unsymmetrical butterfly structure. Tetracene in another configuration possesses four C-Si bonds that are formed via di-sigma reactions between the C atoms at the terminal rings with two center adatom-rest atom pairs within one-half of the surface unit cell. Besides, two other binding modes were proposed based on the dimension compatibility between the tetracene C and the substrate Si dangling bonds even though their identifications through the STM images are nonexclusive. Structural modeling and adsorption energies calculations were carried out using the DFT method. Factors affecting the relative thermodynamic stabilities based on the calculation results and the relative populations of tetracene in the different binding configurations as observed experimentally were discussed.     

Studies on the Electronic Structures of the C_60, C_60H_60 and C_60F_60

The present paper represents the electronic structures of the cluster C60 and its derivatives C60H60 and C60F60 with FOOT-type of structure. On the basis of the total energies and molecular orbital energies from CNDO/2 calculations the clusters' stabilities, electronic configurations and charge distributions are discussed. The calculation results and discussion are very beneficial to understanding physical and chemical properties of the cluster C60 and its derivatives.     

A Density Functional Theory Study on the Adsorption of CN on Ni(111) Surface

1 INTRODUCTION Cyanide, CN, is an important free-radical mole-cule of one carbon chemistry, organic chemistry, free-radical chemistry and cosmochemistry. And the im-portant industrial processes, such as the Andrussovreaction, depend on the reactivity of CN bond[1]. Thechemistry of cyanide is also important in the surfacechemistry of a number of C- and N-containing sys-tems[1, . During the past decade, the adsorption of 2]CN and CN-containing molecules on transition metalsurfa…     

Ab initio and microcalorimetric investigations of alkene adsorption on phosphotungstic acid

The adsorption of ethene, propene, 1-butene, trans-2-butene, and isobutene on phosphotungstic acid has been characterized by density functional theory (DFT) calculations and microcalorimetric experiments. The DFT-calculated chemisorption energies to form the corresponding alkoxides for ethene, propene, 1-butene, trans-2-butene, and isobutene were -86.8, -90.3, -102.6, -79.9, and -91.4 kJ mol(-1), respectively (for their most-favorable binding modes). The relative chemisorption energies to form the alkoxides are dictated by the strength of interaction of the acidic proton with the carbon atom of the double bond that becomes protonated. The activation barrier for chemisorption was greatest for alkenes with primary (1 degrees) carbenium-like transition states followed by secondary (2 degrees) and tertiary (3 degrees) transition states. The adsorption enthalpy established from microcalorimetric experiments with propene and isobutene was approximately -100 kJ mol(-1), which is close to the DFT-calculated values. Chemisorption of ethene on phosphotungstic acid during microcalorimetric experiments was minimal, presumably because of the large activation barrier associated with a 1 degrees carbenium-like transition state. The results from this study are compared with those in the literature for the adsorption of alkenes on zeolites, which have a similar adsorption mechanism. Our results suggest that alkene adsorption is stronger on phosphotungstic acid than on zeolites, as supported by the more exothermic chemisorption energies. Additionally, activation barriers for alkene adsorption are lower over phosphotungstic acid than over zeolites.     

Theoretical study of the reactivity of cesium with benzene and graphitic C(x)H(y) clusters

The adsorption of a Cs atom on planar (C6H6 and C24H12) and nonplanar (C20H10 and C21H9) carbon clusters has been studied using the density-functional theory, with the local-density approximation and atomic pseudopotentials. Binding energies as a function of separation have been calculated for several configurations of the Cs atom on the different substrates. The adsorption on sites above the center of carbon rings is more stable than adsorption on top of carbon atoms and C-C bonds. In the case of the curved clusters, adsorption on the concave side is preferred compared to the convex side. The Cs bonding is stronger on the nonplanar clusters. The strength of the binding energy depends on two effects: the magnitude of the highest occupied molecular orbital-lowest unoccupied molecular orbital (LUMO) energy gap of the substrate, and the energy of the valence state of Cs relative to the LUMO of the substrate. Due to a favorable relative position of those two energy levels, charge transfer occurs from Cs to the two nonplanar clusters, and this provides an ionic contribution to the bonding. The analysis of the electronic density redistribution and of the local Fukui functions helps in the interpretation of the charge transfer and the reactivity.     

Force fields for metallic clusters and nanoparticles

Atomic force fields for simulating copper, silver, and gold clusters and nanoparticles are developed. Potential energy functions are obtained for both monatomic and binary metallic systems using an embedded atom method. Many cluster configurations of varying size and shape are used to constrain the parametrization for each system. Binding energies for these training clusters were computed using density functional theory (DFT) with the Perdew-Wang exchange-correlation functional in the generalized gradients approximation. Extensive testing shows that the many-body potentials are able to reproduce the DFT energies for most of the structures that were included in the training set. The force fields were used to calculate surface energies, bulk structures, and thermodynamic properties. The results are in good agreement with the DFT values and consistent with the available experimental data.     

Adsorption structures of benzene on a Si(5 5 12)-2x1 surface: a combined scanning tunneling microscopy and theoretical study

In the first ever attempt to study the adsorption of organic molecules on high-index Si surfaces, we investigated the adsorption of benzene on Si(5 5 12)-(2x1) by using variable-low-temperature scanning tunneling microscopy and density-functional theory (DFT) calculations. Several distinct adsorption structures of the benzene molecule were found. In one structure, the benzene molecule binds to two adatoms between the dimers of D3 and D2 units in a tilted butterfly configuration. This structure is produced by the formation of di-sigma bonds with the substrate and of two C[Double Bond]C double bonds in the benzene molecule. In another structure, the molecule adsorbs on honeycomb chains with a low adsorption energy because of strain effects. Our DFT calculations predict that the adsorption energies of benzene are 1.03-1.20 eV on the adatoms and 0.22 eV on the honeycomb chains.     

Spectroscopic and tensiometric considerations on anionic surfactants (SDS) and ascorbic acid/ascorbates interactions

The cosmetics and personal care products market is developing dynamically and the formulations of products are subject to numerous modifications due to consumer expectations and market trends. An increase in demand for products containing ascorbic acid or its more stable forms has been observed for several years. In this study, the correlation between SDS and ascorbic acid or its derivatives in aqueous solutions was assessed using spectroscopic and tensiometric methods. The influence of SDS interactions on the total antioxidant capacity of ascorbic acid/ascorbic acid derivatives was analyzed. The highest FRAP values of SDS-AA2G and SDS-EAC systems (0.17 and 2.71 mmol Fe²⁺/g, respectively) were at SDS concentration of 0.40 mM and were much higher than the ones of pure ascorbic acid derivatives. Based on the surface tension isotherms and Szyszkowski's equation, it was found that for the tested SDS/ascorbic acid, ascorbyl glucoside and 3-O-ethyl ascorbic acid systems, the CMC values were: 3.85, 2.54 and 3.31 mmol/dm³. There was also an influence on the values of the adsorption parameters, i.e. the surface excess at the saturated interface, the minimum molecular area in the adsorption layer at the saturated interface and the Gibbs free energy of adsorption. Moreover, in most of the analyzed cases, the tested systems had better wetting properties, which resulted in lower values of the contact angle than in the case of pure SDS solution.     

Theoretical study of the adsorption and dissociation of oxygen on Pt(111) in the presence of homogeneous electric fields

The effect of homogeneous electric fields on the adsorption energies of atomic and molecular oxygen and the dissociation activation energy of molecular oxygen on Pt(111) were studied by density functional theory (DFT). Positive electric fields, corresponding to positively charged surfaces, reduce the adsorption energies of the oxygen species on Pt(111), whereas negative fields increase the adsorption energies. The magnitude of the energy change for a given field is primarily determined by the static surface dipole moment induced by adsorption. On 10-atom Pt(111) clusters, the adsorption energy of atomic oxygen decreased by ca. 0.25 eV in the presence of a 0.51 V/A (0.01 au) electric field. This energy change, however, is heavily dependent on the number of atoms in the Pt(111) cluster, as the static dipole moment decreases with cluster size. Similar calculations with periodic slab models revealed a change in energy smaller by roughly an order of magnitude relative to the 10-atom cluster results. Calculations with adsorbed molecular oxygen and its transition state for dissociation showed similar behavior. Additionally, substrate relaxation in periodic slab models lowers the static dipole moment and, therefore, the effect of electric field on binding energy. The results presented in this paper indicate that the electrostatic effect of electric fields at fuel cell cathodes may be sufficiently large to influence the oxygen reduction reaction kinetics by increasing the activation energy for dissociation.     

Pdn(n=1-7)团簇及其与甲烷相互作用的密度泛函理论研究

用密度泛函理论(DFT)的B3LYP方法, 对Pdn(n=1-7)团簇的几何结构、振动频率及其与甲烷分子间的相互作用进行了理论研究. 结果表明, 随着Pd原子数增多, 团簇结构对团簇大小的依赖性减弱, 结构参数向金属晶体趋近. 在Pdn(n=1-7)团簇上, 甲烷的表面吸附作用较弱. Pd2CH4中, 甲烷受到两个Pd原子的活化作用, 活化程度增强, 吸附能增大. 在PdnCH4 (n=1, 3-7)体系中, 甲烷的吸附能随着团簇模型的增大而减小, 趋近于其在金属晶面上的吸附能.     

Experimental and DFT studies of the conversion of ethanol and acetic acid on PtSn-based catalysts

Reaction kinetics studies were conducted for the conversions of ethanol and acetic acid over silica-supported Pt and Pt/Sn catalysts at temperatures from 500 to 600 K. Addition of Sn to Pt catalysts inhibits the decomposition of ethanol to CO, CH4, and C2H6, such that PtSn-based catalysts are active for dehydrogenation of ethanol to acetaldehyde. Furthermore, PtSn-based catalysts are selective for the conversion of acetic acid to ethanol, acetaldehyde, and ethyl acetate, whereas Pt catalysts lead mainly to decomposition products such as CH4 and CO. These results are interpreted using density functional theory (DFT) calculations for various adsorbed species and transition states on Pt(111) and Pt3Sn(111) surfaces. The Pt3Sn alloy slab was selected for DFT studies because results from in situ (119)Sn M?ssbauer spectroscopy and CO adsorption microcalorimetry of silica-supported Pt/Sn catalysts indicate that Pt-Sn alloy is the major phase present. Accordingly, results from DFT calculations show that transition-state energies for C-O and C-C bond cleavage in ethanol-derived species increase by 25-60 kJ/mol on Pt3Sn(111) compared to Pt(111), whereas energies of transition states for dehydrogenation reactions increase by only 5-10 kJ/mol. Results from DFT calculations show that transition-state energies for CH3CO-OH bond cleavage increase by only 12 kJ/mol on Pt3Sn(111) compared to Pt(111). The suppression of C-C bond cleavage in ethanol and acetic acid upon addition of Sn to Pt is also confirmed by microcalorimetric and infrared spectroscopic measurements at 300 K of the interactions of ethanol and acetic acid with Pt and PtSn on a silica support that had been silylated to remove silanol groups.