对、间位卤代苯甲酸在水-乙醇混合溶剂中电离过程的焓、熵贡献

用LKB-2277Bioactivity Monitor测定了25℃时间氯、对氯和对氟苯甲酸在水-乙醇混合溶剂中的标准电离焓, 计算了相应体系的标准电离熵。利用Hammett方程对溶剂中酸的取代基常数σ进行了计算, 求取了对应的焓、熵取代基常数σH和σS值及熵反应常数ρS, 利用内部-环境模型和上述常数对溶剂效应和取代基效应进行了解释。     

Enthalpic, entropic, and square gradient contributions to the surface energetics of amine-cured epoxy systems

The evolution of surface tension during polymerization of three amine-cured epoxy systems was investigated. Due to the chemical reaction of the epoxy groups with primary and secondary amines, the energetic status of an epoxy-amine system increased during polymerization. At the same time, the polymerization process induced entropic variations, also contributing to the evolution of surface energetics. A simple relation expressing the surface tension as a function of the bulk energy, the entropy of the system, and the square gradient of the polymer density was derived. The bulk and surface energetics were expressed in terms of solubility parameter and surface tension, respectively. The former was predicted using the Van Krevelen group contribution method, while the latter was directly measured using the Wilhelmy wetting method. Results indicated that, in all the three epoxy-amine systems under investigation, a unique relationship combining the surface tension, the bulk energy, the entropy, and the density square gradient of the system could be used. On the basis of the present study, and taking into account all contributory factors, it was concluded that the enthalpy component to the surface energetics is the dominant contribution.     

Enthalpic and entropic contributions of water molecules to the functional T → R transition of human hemoglobin in solution

Generalized solvent-mediated forces contribute to free energy at the functional T → R transition of human hemoglobin A (HbA). Their contribution is here sorted out quantitatively in both its enthalpic and entropic parts, along with the average number of water molecules involved. The latter (about 75 waters in average) must be considered together with HbA as one statistically defined functional unit for oxygen transport. Their configurations are expected to undergo frequent structural rearrangements. Lifetimes of statistically relevant configurations do not need to (although, of course, they may) exceed by more than a factor 5 the normal H-bond lifetimes of the pure solvent. Compared to the bare protein, the “functional unit” here evidenced for the first time involves a larger, higher dimensionality region of the phase space. The study allows a microscopic view of solvent-mediated generalized forces and evidences their qualitative and quantitative relevance to biomacromolecular function and stability.     

Enthalpic and entropic contributions to the conformational free energies of methylthio, methylsulfinyl, methylsulfonyl, phenylthio, phenylsulfinyl, and phenylsulfonyl

A variable-temperature NMR study of (cis-4-methylcyclohexyl)methyl sulfide (1), sulfoxide (2), and sulfone (3), as well as (cis-4-methylcyclohexyl)phenyl sulfide (4), sulfoxide (5), and sulfone (6) allowed determination of the thermodynamic parameters, DeltaH degrees and DeltaS degrees, for the title groups. Reproduction of the experimental results with Allinger's MM3 program was successfully accomplished in the case of the sulfoxide and sulfide groups. Nevertheless, modification of the original force field torsional parameters was required in order to adequately reproduce the experimentally observed behavior of the sulfonyl derivatives. Rationalization of the enthalpic and entropic contributions to DeltaG degrees [S(O)(n)()R, n = 0, 1, 2; R = CH(3), Ph] is advanced in terms of the steric characteristics of these sulfur-containing groups and the resulting rotameric populations in the axial and equatorial monosubstituted cyclohexanes.     

Enthalpic and entropic contributions to substituent effects for the ionization of meta- and para-nitrobenzoic acids in water-dimethylsulphoxide mixtures at 25°C

Enthalpic and entropic contributions to substituent effects for the ionization of m-and p-nitrobenzoic acids are examined, ranging from pure water to 0.8 mole fraction DMSO. The effect of the medium on the substituent and reaction constants is explained in terms of solute—solvent interactions. No structure-breaking effect was found.     

Enthalpic and entropic contributions to substituent effects on the ionization of meta- and para-chlorobenzoic acids in water-dimethylsulfoxide mixtures at 25°C

Separate enthalpic and entropic contributions to substituent effects on the dissociation of m- and p-chlorobenzoic acids in water-dimethylsulfoxide mixtures ranging from 0 to 0.8 mole fraction DMSO are presented.The effect of the medium on the substituent and reaction constants for the ionization processes is explained in terms of solute-solvent interactions and related structure breaking.     

Interdependence of enthalpic and entropic contributions to the second osmotic virial coefficient

The interdependence of the enthalpic contribution A_{2, H} and the entropic contribution A_{2, s} to the second osmotic virial coefficient for a given polymer-solvent system has been investigated from the experimental and the theoretical point of view. Experimentally, the following common facts were observed for various systems at temperatures and pressures below the critical values for the solvent. Both the isobaric and isothermal dependences can be approximated over relatively wide ranges of A_{2, H} by linear relations with a slope deviating only slightly, but in a characteristic manner from a value of ?1. When the temperature is increased at constant pressure one moves along an isobar towards higher A_{2, H}; when the pressure is increased at constant temperature, one moves along an isotherm in the opposite direction, i.e., towards lower A₂, _H. Theoretically this behavior can be described in a qualitative manner, starting from a relation derived by Patterson and Delmas on the basis of the Prigogine corresponding-states theory. The reasons for the lack of quantitative agreement are discussed.     

Enthalpic and entropic contributions to substituent effects for the ionization of meta- and para-hydroxybenzoic acids in water—dimethylsulfoxide mixtures at 25°C

Separate enthalpic and entropic contributions to substituent effects on the dissociation of m-hydroxybenzoic acid in water—dimethylsulfoxide mixtures ranging from 0.0 to 0.57 mole fraction of DMSO are presented. The effect of the medium on the reaction constant is explained in terms of solute—solvent interactions. The entropy reaction constant values ?_s of the meta-hydroxy compound are much greater than those of the meta-chloro and nitro compounds in the examined mole fraction range.For the para-hydroxy isomer only a trend of σ_s and ?_s values can be calculated. This fact is due to the electron-releasing resonance effect which overlaps and prevails over the inductive effect.     

The entropic and enthalpic contributions to force-dependent dissociation kinetics of the pyrophosphate bond

We report quantum-chemical calculations of the activation free energy of solvolysis of the pyrophosphate bond in a conformationally flexible reactant coupled to a constraining potential. The results reveal a significant contribution of conformational entropy to the force-dependent kinetics of even a fairly small reactant, suggesting that accurate predictions or molecular interpretation of localized reaction kinetics in stretched polymers may require explicit consideration of their force-dependent conformational heterogeneity. We further show that modeling the conformational space of the reactant and the transition state as collections of overlapping harmonic wells accurately predicts the force-dependent activation free energy up to 2 nN without detailed quantum-chemical computations. An estimate of the activation energies is obtained from the minimal (Eyring-Bell-Evans) model using the local coordinate common to all nucleophilic displacement reactions.     

Understanding the enthalpic and entropic contributions to solvent effects on osmium tetroxide complexation with pyridine

Solvent effects on the complex formation of osmium tetroxide (which is the most reliable reagent available for the cis-hydroxylation of alkenes) and pyridine were investigated using spectrophotometric techniques in different solvents (benzene, chloroform, acetone, acetonitrile, anisole, tetrahydrofuran, nitrobenzene and nitromethane). The enthalpy and entropy exhibit opposing effects on stability constant with the change in solvent. In these solvents, the entropy and enthalpy of the reaction are found to be mainly influenced by the donor number (DN) of the solvents.     

Enthalpic and entropic stages in alpha-helical peptide unfolding, from laser T-jump/UV Raman spectroscopy

The alpha-helix is a ubiquitous structural element in proteins, and a number of studies have addressed the mechanism of helix formation and melting in simple peptides. However, fundamental issues remain to be resolved, particularly the temperature (T) dependence of the rate. In this work, we report application of a novel kHz repetition rate solid-state tunable NIR (pump) and deep UV Raman (probe) laser system to study the dynamics of helix unfolding in Ac-GSPEA3KA4KA4-CO-D-Arg-CONH2, a peptide designed for helix stabilization in aqueous solution. Its T-dependent UV resonance Raman (UVRR) spectra, excited at 197 nm for optimal enhancement of amide vibrations, were decomposed into variable contributions from helix and coil spectra. The helix fractions derived from the UVRR spectra and from far UV CD spectra were coincident at low T but deviated increasingly at high T, the UVRR curve giving higher helix content. This difference is consistent with the greater sensitivity of UVRR spectra to local conformation than CD. After a laser-induced T-jump, the UVRR-determined helix fractions defined monoexponential decays, with time-constants of approximately 120 ns, independent of the final T (Tf = 18-61 degrees C), provided the initial T (Ti) was held constant (6 degrees C). However, there was also a prompt loss of helicity, whose amplitude increased with increasing Tf, thereby defining an initial enthalpic phase, distinct from the subsequent entropic phase. These phases are attributed to disruption of H-bonds followed by reorientation of peptide links, as the chain is extended. When Ti was raised in parallel with Tf (10 degrees C T-jumps), the prompt phase merged into an accelerating slow phase, an effect attributable to the shifting distribution of initial helix lengths. Even greater acceleration with rising Ti has been reported in T-jump experiments monitored by IR and fluorescence spectroscopies. This difference is attributable to the longer range character of these probes, whose responses are therefore more strongly weighted toward the H-bond-breaking enthalpic process.     

Empirical entropic contributions in computational docking: evaluation in APS reductase complexes

The results from reiterated docking experiments may be used to evaluate an empirical vibrational entropy of binding in ligand-protein complexes. We have tested several methods for evaluating the vibrational contribution to binding of 22 nucleotide analogues to the enzyme APS reductase. These include two cluster size methods that measure the probability of finding a particular conformation, a method that estimates the extent of the local energetic well by looking at the scatter of conformations within clustered results, and an RMSD-based method that uses the overall scatter and clustering of all conformations. We have also directly characterized the local energy landscape by randomly sampling around docked conformations. The simple cluster size method shows the best performance, improving the identification of correct conformations in multiple docking experiments.     

Mesoscopic analysis of conformational and entropic contributions to nonspecific adsorption of HP copolymer chains using dynamic Monte Carlo simulations

Dynamic Monte Carlo simulations of short linear HP-type copolymers exhibiting proteinlike characteristics are used to investigate both chain dynamics and changes in chain conformational entropy and their contributions to the energetics of adsorption onto a solid-liquid interface. The dMC results show that the conformations and energies of adsorbed chains are highly degenerate. The ensemble-averaged energy of the adsorbed state is dependent on temperature, chain sequence, native-state stability, and sorbent surface geometry and hydrophobicity. Mesoscopic thermodynamic analyses reveal that, although increased chain conformational entropy contributes to the driving force for adsorption in certain cases, many conditions exist where the change in conformational entropy is either negligible or unfavorable due to constraints imposed by the need to form a large and specific number of favorable intra- and intermolecular contacts and by the impenetrable nature of the sorbent surface. Step-number-averaged energy trajectories, based on sampling of a large number of energy trajectories and thus conformational states at each step number, suggest that the search for a global energy minimum is gradual, so that adsorption is first reversible but becomes apparently irreversible with longer exposure to the sorbent. These results appear to be connected to the conformational adaptability of the chain both on the surface and in solution, and an adsorption model taking chain conformational dynamics into account is proposed.     

Nucleophilicity-periodic trends and connection to basicity

The potential energy profiles of 18 identity S(N)2 reactions have been estimated by using G2-type quantum-chemical calculations. The reactions are: X- + CH3-X --> X-CH3 + X- and XH + CH3-XH+ --> +HX-CH3 + XH (X = NH2, OH, F, PH2, SH, Cl, AsH2, SeH, Br). Despite the charge difference, the barrier heights and the geometrical requirements upon going from the reactant to the transition structure are surprisingly similar for X- and XH. The barrier heights decrease on going from left to right in the periodic table, and increasing ionization energy (of X- and XH) is correlated with decreasing barrier. The observed trends are explained in terms of substrates with stronger electrostatic character giving rise to lower energetic barriers due to decreased electron repulsion in the transition structure. On the basis of this study, the relationship between the kinetic concept of nucleophilicity and the thermodynamic concept of basicity has been analyzed and clarified. Since the trends in intrinsic nucleophilicity (only defined for identity reactions) and basicity are opposite, overall nucleophilicity (defined for any reaction) will be determined by the relative contribution of the two factors. Only for strongly exothermic reactions will basicity and nucleophilicity be matching.     

Enthalpic analysis of the CaTiSiO5 system

The relative enthalpy of titanite and enthalpy of CaTiSiO₅ melt have been measured using drop calorimetry between 823 K and 1843 K. Enthalpies of solution of titanite and CaTiSiO₅ glass have been measured by the use of hydrofluoric acid solution calorimetry at 298 K. Enthalpy of vitrification at 298 K, δ_vitr H(298 K) = (80.7 ± 3.4) kJ mol⁻¹, and enthalpy of fusion at the temperature of fusion 1656 K, δ_fus H(1656 K) = (139 ± 3) kJ mol⁻¹, of titanite have been determined from experimental data. The obtained enthalpy of fusion is considerably higher than up to the present published values of this quantity.     

Enthalpic relaxation and the glass transition in polymer blends

The kinetics of enthalpic relaxation are reviewed and applied to the ageing of a range of blends made from polyether imide and polyether ether ketone. DSC has been used to follow the development of enthalpic relaxation and a Williams-Watt stretched exponential equation relating the extent of relaxation, ϕ(t), to the ageing time t and an average relaxation time, t́_a', has been used to quantify the ageing process. where β' is inversely related to the breadth of the relaxation spectrum such that 0<β>1.0. The relationship was modified to incorporate non-linearity in the relaxation behaviour. ϕ(t) was measured directly from the enthalpy change observed in the endotherms on heating aged specimens through the glass transition in the DSC. The PEI/PEEK blends were compatible over the full composition range in that they exhibited a single glass transition with a temperature that varied almost linearly with composition between those of the homopolymers. Enthalpic relaxation was found to be a useful technique for probing the molecular relaxations of polymer blends and confirming the degree of compatibility of the system. The β' values changed systematically with the blend composition between those of the homopolymers suggesting that the breadth of the relaxation spectra were similar in the blends to that in the homopolymers. Physical ageing was observed to embrittle the blends, and there was a close correlation between the extent of enthalpic ageing and the change in mechanical and impact behaviour. The yield stress increased and the elongation to break decreased progressively with ϕ(t) in addition to a reduction in impact strength. The model of enthalpic relaxation and the kinetic relationships, outlined above, have been used to determine the onset of the glass transition temperature and subsequent progress of enthalpic relaxation at fixed ageing temperatures, for direct comparison with the change in specific heat observed in DSC experiments. Good agreement was observed between experiment and calculated glass transitions and the effect of variables, such as activation enthalpies, pre-exponential factors, non-linear factors such as X and β' and fictive temperature on the observed glass transition temperatures and the temperature range over which the glass transition occurred determined. Modifications to the model for the enthalpic relaxation have been suggested.