Synthesis, structural characterization, and molecular modeling of dodecaniobate keggin chain materials

Four new isostructural one-dimensional dodecaniobate Keggin materials, Na12[Ti2O2][TNb12O40] x xH2O and Na10[Nb2O2][TNb12O40] x xH2O with T = (Si or Ge), have been synthesized hydrothermally using a Lindqvist-ion salt, Na7[Nb6O19H] x 15H2O, as the precursor. Their structure, consisting of chains of Keggin ions [TNb12O40]16- linked by [Ti2O2]4+ or [Nb2O2]6+ bridges, was solved ab initio from powder diffraction data. The location of the charge-balancing sodium atoms and the water molecules was further investigated by molecular simulations. These compounds were also characterized by IR and solid-state 1H, 29Si, and 23Na MAS NMR spectroscopies. The structural relationships between these and related phases based on similar Keggin ion building units are discussed.     

The N-terminal domain of apolipoprotein B-100: structural characterization by homology modeling

Background  

Apolipoprotein B-100 (apo B-100) stands as one of the largest proteins in humans. Its large size of 4536 amino acids hampers the production of X-ray diffraction quality crystals and hinders in-solution NMR analysis, and thus necessitates a domain-based approach for the structural characterization of the multi-domain full-length apo B.     

d-Xylose-based surfactants: Synthesis,characterization and molecular modeling studies

Pentose-derived surfactants were easily synthesized and fully characterized through classical analytical methods. The interfacial behaviors revealed the importance of both the length of the hydrophobic chain and the nature of the anomeric form. Finally, the spatial conformation of four xylosides was obtained by molecular modeling with software Hyperchem^® 4 using the semi-empirical method PM3, which demonstrated the role of hydrophobic interactions in the stability of the compounds.     

Chromate nanorods/nanobelts: general synthesis, characterization, and properties

A general synthesis route to a family of single-crystal chromate nanorods/nanobelts has been established. The effects of pH and surfactant on phase and morphology of these microcrystalline materials have been investigated. The physical properties of the as-synthesized chromate nanocrystals such as dielectric, electrochemical, UV-vis absorbance, and photoluminescent properties have also been studied. The present general synthesis of various low-dimensional chromate nanomaterials provides useful information on the possible synthesis of other microcrystalline transition metal oxysalts.     

Acyclic selenoiminium salts: isolation,first structural characterization,and reactions

[reaction: see text] A variety of selenoiminium salts were obtained by reacting the corresponding selenoamides with methyl triflate at room temperature for 30 s. All of the salts were stable under air. The structures of the selenoiminium salts were determined by X-ray molecular analysis. An aromatic selenoiminium salt reacted with BuLi (3 equiv) to give two types of ketones. In a reaction with LiAlH(4)/Te, the selenoiminium salts were converted to telluroamides.     

Vanadium-doped hafnia: elaboration and structural characterization

Powders of HfO₂ doped with various amounts of vanadium were prepared by pyrolysis of oxalic precursors at relatively low temperature (700 °C). This pyrolysis was carried out under different atmospheres in order to insert vanadium under different oxidation states into hafnia. The various amounts of inserted vanadium into HfO₂ were determined by energy dispersive spectroscopy. The powders were structurally characterized by X-ray diffraction, and electron diffraction. Nano particles of monoclinic HfO₂ were obtained when incorporating V⁵⁺. The solubility limit in that case was found to be less than 10 at %. The insertion of vanadium with a lower oxidation state than 5+ led to the stabilization of the cubic phase, with a solubility limit higher than 30 % at.     

26pi aromatic core-modified hexaphyrins: syntheses, characterization, and structural diversities

Synthesis and characterization of several 26pi core-modified hexaphyrins are reported. The synthetic methodology involved a well-known acid-catalyzed MacDonald-type condensation reaction of the required tripyrrane with electron deficient pentafluorobenzaldehyde. The nature of the product and yield depends on the nature of the acid catalyst and its concentration. Dioxahexaphyrin 9 was isolated only when 0.5 equiv of TFA was used as a catalyst, while dithiahexaphyrin 10 and diselenahexaphyrin 11 were formed with TFA, PTSA, and even in the absence of catalyst. The detailed 1H and 2-D COSY as well as HSQC experiments reveal the solution structure as well as the conformational mobility of hexaphyrins. In the tetracationic state, 10 and 11 exhibit a four heterocyclic ring inverted structure, while only two completely inverted heterocyclic rings were observed for 9. The other four heterocyclic rings are only partially inverted in 9. All the hexaphyrins reported here show aromatic character inferred from large Deltadelta values (difference in chemical shift between the most shielded and the most deshielded protons). Electronic absorption spectral studies also support the conformational changes observed upon protonation.     

2,6-Diazasemibullvalenes: synthesis, structural characterization, reaction chemistry, and theoretical analysis

A series of 2,6-diazasemibullvalenes (NSBVs) were synthesized and isolated from the reaction of 1,4-dilithio-1,3-dienes with nitriles via oxidant-induced C-N bond formation. For the first time, the activation barrier and an X-ray crystal structure of a substituted 2,6-diazasemibullvalene were determined. All NSBVs show extremely rapid aza-Cope rearrangement in solution, but the rapid aza-Cope rearrangement is "frozen" in the solid state, as shown by solid-state NMR measurements and X-ray single-crystal structural analysis. Insertion of unsaturated compounds or a low-valent metal center into the NSBV C-N bond gave diverse and interesting ring-expansion products. Theoretical analysis showed that the localized structure is predominant and that the homoaromatic delocalized structure exists as a minor component in the equilibrium.     

Mono- and binuclear ruthenium corroles: synthesis,spectroscopy, electrochemistry,and structural characterization

The aim of this research was to prepare mononuclear ruthenium corroles, because of the well-documented potency of analogous porphyrin complexes in catalysis. The syntheses of the mononuclear nitrosyl complexes [Ru(tpfc)(NO)] and [Ru(tdcc)(NO)] (tpfc=trianion of 5,10,15-tris(pentafluorophenyl)corrole, tdcc=trianion of 5,10,15-tris(2,6-dichlorophenyl)corrole), and of the binuclear [[Ru(tpfc)](2)] were achieved by using [[Ru(cod)Cl(2)](x)] (cod=cyclooctadiene) as the metal source. The NMR spectra of all three complexes clearly demonstrate that they are diamagnetic; this is consistent with a triple bond between the metal ions in [[Ru(tpfc)](2)] and is expected for classical [MNO](6) complexes. These features were further substantiated by the stretching frequencies of the [MNO] moieties, electrochemical measurements on all complexes, and the X-ray crystal structures of [Ru(tpfc)(NO)] and [[Ru(tpfc)](2)]. A comparison of the spectroscopic and structural characteristics of these new complexes with analogous iron corroles, as well as with iron and ruthenium porphyrins, suggests that it will be hard to obtain mononuclear ruthenium corroles without pi-accepting ligands.     

Osmium NAMI-A analogues: synthesis, structural and spectroscopic characterization, and antiproliferative properties

The osmium(III) complex [(DMSO)2H][trans-OsIIICl4(DMSO)2] (1) has been prepared via stepwise reduction of OsO4 in concentrated HCl using N2H(4).2HCl and SnCl(2).2H2O in DMSO. 1 reacts with a number of azole ligands, namely, indazole (Hind), pyrazole (Hpz), benzimidazole (Hbzim), imidazole (Him), and 1H-1,2,4-triazole (Htrz), in organic solvents, affording novel complexes (H2ind)[OsIIICl4(Hind)(DMSO)] (2), (H2pz)[OsIIICl4(Hpz)(DMSO)] (3), (H2bzim)[OsIIICl4(Hbzim)(DMSO)] (4), (H2im)[OsIIICl4(Him)(DMSO)] (6), and (H2trz)[OsIIICl4(Htrz)(DMSO)] (7), which are close analogues of the antimetastatic complex NAMI-A. Metathesis reaction of 4 with benzyltriphenylphosphonium chloride in methanol led to the formation of (Ph3PCH2Ph)[OsIIICl4(Hbzim)(DMSO)] (5). The complexes were characterized by IR, UV-vis, ESI mass spectrometry, 1H NMR spectroscopy, cyclic voltammetry, and X-ray crystallography. In contrast to NAMI-A, 2-4, 6, and 7 are kinetically stable in aqueous solution and resistant to hydrolysis. Surprisingly, they show reasonable antiproliferative activity in vitro in two human cell lines, HT-29 (colon carcinoma) and SK-BR-3 (mammary carcinoma), when compared with analogous ruthenium compounds. Structure-activity relationships and the potential of the prepared complexes for further development are discussed.     

Biochemical and structural insights of the early glycosylation steps in calicheamicin biosynthesis

The enediyne antibiotic calicheamicin (CLM) gamma(1)(I) is a prominent antitumor agent that is targeted to DNA by a novel aryltetrasaccharide comprised of an aromatic unit and four unusual carbohydrates. Herein we report the heterologous expression and the biochemical characterization of the two "internal" glycosyltransferases CalG3 and CalG2 and the structural elucidation of an enediyne glycosyltransferase (CalG3). In conjunction with the previous characterization of the "external" CLM GTs CalG1 and CalG4, this study completes the functional assignment of all four CLM GTs, extends the utility of enediyne GT-catalyzed reaction reversibility, and presents conclusive evidence of a sequential glycosylation pathway in CLM biosynthesis. This work also reveals the common GT-B structural fold can now be extended to include enediyne GTs.     

Peptidyl-transferase ribozymes: trans reactions,structural characterization and ribosomal RNA-like features

Background: One of the most significant questions in understanding the origin of life concerns the order of appearance of DNA, RNA and protein during early biological evolution. If an ‘RNA world’ was a precursor to extant life, RNA must be able not only to catalyze RNA replication but also to direct peptide synthesis. Iterative Iterative RNA selection previously identified catalytic RNAs (ribozymes) that form amide bonds between RNA and an amino acid or between two amino acids.Results: We characterized peptidyl-transferase reactions catalyzed by two different families of ribozymes that use substrates that mimic A site and P site tRNAs. The family II ribozyme secondary structure was modeled using chemical modification, enzymatic digestion and mutational analysis. Two regions resemble the peptidyl-transferase region of 23S ribosomal RNA in sequence and structural context; these regions are important for peptide-bond formation. A shortened form of this ribozyme was engineered to catalyze intermolecular (‘trans’) peptide-bond formation, with the two amino-acid substrates binding through an attached AMP or oligonucleotide moiety.Conclusions: An in vitro-selected ribozyme can catalyze the same type of peptide-bond formation as a ribosome; the ribozyme resembles the ribosome because a very specific RNA structure is required for substrate binding and catalysis, and both amino acids are attached to nucleotides. It is intriguing that, although there are many different possible peptidyl-transferase ribozymes, the sequence and secondary structure of one is strikingly similar to the ‘helical wheel’ portion of 23S rRNA implicated in ribosomal peptidyl-transferase activity.     

Cluster resolution: a metric for automated, objective and optimized feature selection in chemometric modeling

A novel metric termed cluster resolution is presented. This metric compares the separation of clusters of data points while simultaneously considering the shapes of the clusters and their relative orientations. Using cluster resolution in conjunction with an objective variable ranking metric allows for fully automated feature selection for the construction of chemometric models. The metric is based upon considering the maximum size of confidence ellipses around clusters of points representing different classes of objects that can be constructed without any overlap of the ellipses. For demonstration purposes we utilized PCA to classify samples of gasoline based upon their octane rating. The entire GC-MS chromatogram of each sample comprising over 2 × 10⁶ variables was considered. As an example, automated ranking by ANOVA was applied followed by a forward selection approach to choose variables for inclusion. This approach can be generally applied to feature selection for a variety of applications and represents a significant step towards the development of fully automated, objective construction of chemometric models.     

Tannins of tamarind seed husk: preparation, structural characterization, and antioxidant activities

The high content (about 39%) of polymeric tannins in tamarind (Tamarindus indica L.) seed husk (TSH) was demonstrated, and an extract (crude TSE) with a high content (about 94%) of polymeric tannins was prepared from TSH with a one pot extraction using ethanol/water (3:2, v/v). The crude TSE was further purified with Sephadex LH20 to give one fraction (metTSE) eluted with methanol/water (3:2, v/v) and another (acTSE) eluted with acetone/water (3:2, v/v). The tannins of acTSE were established as polymeric proanthocyanidins (PA) by 13C NMR spectroscopy; this was further confirmed by IR and UV spectroscopy, n-BuOH/HCl and vanillin assays, and from HPLC pattern. The ratio of procyanidins to prodelphinidins was 2:3, and the average degree of polymerization of acTSE was 7. Galloylated flavan-3-ols were not detected in acTSE. The main ingredients of metTSE were confirmed to be polymeric PA by 13C NMR spectroscopy. The antioxidant activities using DPPH and ABTS assays were investigated. The IC50 values of acTSE were 4.2 +/- 0.2 (DPPH assay) and 6.2 +/- 0.3 microg/mL (ABTS assay).     

1,2,5-Thiadiazole 2-oxides: selective synthesis,structural characterization,and electrochemical properties

A new general procedure for the selective synthesis of 1,2,5-thiadiazole 2-oxides (including fused derivatives) 8a,b,c,g,h from the reaction of vic-glyoximes with S₂Cl₂ and pyridine in acetonitrile was elaborated together with general procedure for the synthesis of 1,2,5-thiadiazoles 7a–i, 10, 12, and 14 from the same starting materials and reagents. Molecular structures of 3,4-dimethyl-1,2,5-thiadiazole 2-oxide 8a and [1,2,5]thiadiazolo[3,4-b]quinoxaline 10 were confirmed by single-crystal X-ray diffraction. Electrochemical properties of 1,2,5-thiadiazole 2-oxides 8 were studied by cyclic voltammetry and different behavior was observed for monocyclic and benzo-fused derivatives. With compounds 8g and 17, previously unknown deoxygenation of 2,1,3-benzothiadiazole 1-oxides was discovered by electrochemical reduction, and resulted 2,1,3-benzothiadiazoles 7g and 19 were detected in the forms of their radical anions by EPR spectroscopy combined with DFT calculations.     

磁性脂质体的制备及在肿瘤诊断与靶向治疗中的应用进展

磁性脂质体是近年来发展起来的新型靶向制剂,能在外加磁场作用下大量滞留在靶部位.由于磁性脂质体具有良好的生物相容性、无毒、易生物降解,因而被广泛用于肿瘤诊断与靶向治疗等领域.本文作者综述了磁性脂质体的制备方法及其在肿瘤诊断与靶向治疗中的应用进展.     

Donor-functionalized polydentate pyrylium salts and phosphinines: synthesis, structural characterization, and photophysical properties

A series of donor-functionalized pyrylium salts have been prepared by classical condensation reactions which were further converted into the corresponding thienyl- and pyridyl-substituted polydentate lambda(3)-phosphinines by reaction with P(SiMe(3))(3). Further chemical modification of these phosphorus heterocycles with Hg(OAc)(2) in the presence of methanol resulted in the formation of lambda(5)-phosphinines. The photophysical properties of a selected series of thienyl- and pyridyl-functionalized pyrylium salts, lambda(3)- and lambda(5)-phosphinines, were investigated and the results compared and supported by theoretical calculations on the DFT level. Significant fluorescence was observed for the pyrylium salts and lambda(5)-phosphinines. In contrast, the heteroaromatic substituted lambda(3)-phosphinines show very little emission which is consistent with the low oscillator strength predicted by DFT calculations for this pi-->pi* transition. Furthermore, all three classes of compounds show readily observable phosphorescence in solution, which was determined by time-gated detection at low temperature.     

Synthesis,structural characterization and photoisomerization of cyclic stilbenes

Six cyclic stilbene derivatives with hindered free rotation around the C(vinyl)–C(phenyl) single bond were synthesized by McMurry coupling. The torsion angles around the double and the single bond, and the CC bond length were obtained for many of the compounds from their solid-state structures. The photochemical isomerization was subsequently investigated for all derivatives under various conditions. The parent 1-(1-tetralinylidene)tetralin underwent efficient oxidative electrocyclization. The 2,2,2′,2′-tetramethylated analogue was resistant towards photooxidation, however, its cis-isomer thermally reisomerized to the more stable trans-isomer.     

C20 carbon clusters: fullerene-boat-sheet generation, mass selection, photoelectron characterization

Electron-impact ionization in a time-of-flight mass spectrometer of C(20)H(0-3)Br(14-12) probes-secured from C(20)H(20) dodecahedrane by a "brute-force" bromination protocol-provided bromine-free C(20)H(0-2(3)) anions in amounts that allowed the clean mass-separation of the hydrogen-free C(20) (-) ions and the photoelectron (PE) spectroscopic characterization as C(20) fullerene (electron affinity (EA)=2.25+/-0.03 eV, vibrational progressions of 730+/-70). The extremely strained C(20) fullerene ions surfaced as kinetically rather stable entities (lifetime of at least the total flight time of 0.4 ms); they only very sluggishly expel a C(2) unit. The HOMO and LUMO are suggested to be almost degenerate (DeltaE=0.27 eV). The assignment as a fullerene was corroborated by the PE characterization of the C(20) bowl (EA=2.17+/-0.03 eV, vibrational progression of 2060+/-50 cm(-1)) analogously generated from C(20)H(10) corannulene (C(20)H(1-3)Br(9-8) samples) and comparably stable. Highly resolved low-temperature PE spectra of the known C(20) ring (EA=2.49+/-0.03 eV, vibrational progressions 2022+/-45 and 455+/-30 cm(-1)), obtained from graphite, display an admixture of, most probably, a bicyclic isomer (EA=3.40+/-0.03 eV, vibrational progression 455+/-30 cm(-1)). The C(20) (+(-)) and C(20)H(2) (+(-)) cluster ions generated from polybrominated perylene (C(20)H(0-2)Br(12-10)) have (most probably) retained the planar perylene-type skeleton (sheet, EA=2.47+/-0.03 eV, vibrational progressions of 2089+/-30 and 492+/-30 cm(-1) and EA=2.18+/-0.03 eV, vibrational progressions of 2105+/-30 and 468+/-30 cm(-1)).     

FER型沸石的合成、结构与吸附性质

在TMEDA(四甲基乙基二胺)-Na2O-SiO2-Al2O3-H2O体系(I),Na2O-K2O-Al2O3-SiO2-H2O-HCO3^--CO3^2^-体系(II)及Py(吡啶)-PrNH2(正丙胺)-HF-SiO2-H2O体系(III)中, 分别合成了纯相FER沸石及FER硅沸石。用粉末XRD, FT-IR, 29Si MAS NMR及TG/DTA等表征其结构性质, 并用超微量电子真空吸附天平测定这些沸石样品对正己烷, 甲醇和水的吸附等温线。结果表明: 各体系合成的样品虽然结晶度高, 呈现出FER沸石的典型结构特征, 但由于它们的组成和晶格微结构不同, 热稳定性与吸附性质有明显的差异。在(I)体系中合成的FER沸石层错缺陷少, 晶格完美, 正己烷与甲醇的吸附量可达到理论值, 结构破坏温度为1190℃。红外精细谱及29Si MAS NMR高分辨谱证明FER硅沸石具有十分完美的骨架结构。由于晶胞收缩, 它对正己烷与甲醇吸附量略低于理论值, 并呈现出高度的疏水性。它的结构破坏温度高于1300℃。在(II)体系中合成的FER型沸石结构缺陷多, 沸石孔中的钾离子不易被质子完全交换。它的正己烷与甲醇吸附量均较低, 而水的吸附量相对较高。吸附现象表明, 正己烷和甲醇都被吸附于FER沸石的十元环主孔道中, 分压较高时, 甲醇可通过八元环进入小笼, 而水的吸附性质则主要与各样品的Si-OH缺陷及骨架中的阳离子含量有关。