Study by electron paramagnetic resonance and spectrophotometry of absorption of the primary processes in photochemistry of frozen aqueous solutions at 77 degree K of aromatic amino acids and polypeptides

Abstract— Neutral, acidic or basic frozen aqueous solutions of aromatic amino acids undergo photoionisation under u.v. irradiation, at 77°K. In neutral or basic solutions, photo-ejected electrons are trapped in the solvent matrix and exhibit a characteristic absorption band in the visible region. In acidic solutions electrons are trapped by protons and ESR signal spectrum of hydrogen atoms may be observed. Hydrogen atoms are also produced in low yield in neutral or basic frozen aqueous solutions, u.v. irradiated at 77°K. In basic media the ESR spectrum of 0^- radical ions is observed. Kinetic studies as a function of light intensity show that photoionisation takes place after absorption of a second photon by the phosphorescent molecule in its lowest triplet state. Recombination of trapped electrons in neutral or basic solutions may be induced using secondary excitation with visible light. In all instances we could record the absorption spectrum of photolytic products of aromatic amino acids and polypeptides which are u.v. irradiated at 77°K.     

THEORETICAL ASPECTS OF THE U.V. INACTIVATION OF PROTEINS CONTAINING DISULFIDE BONDS

Equations are proposed for the estimation of quantum yields for cystine destruction and disulfide protein inactivation during u.v.-irradiation in acidic and neutral solutions. The formulas permit a discussion of energy transfer from excited aromatic amino acids to cystines and/or of chemical reactions between excited tryptophans or tyrosines and cystines. The results are discussed with regard to general aspects of the photo-biochemistry of enzymes.     

THEORETICAL ASPECTS OF THE U.V. INACTIVATION OF PROTEINS CONTAINING DISULFIDE BONDS

Abstract Equations are proposed for the estimation of quantum yields for cystine destruction and disulfide protein inactivation during u.v.-irradiation in acidic and neutral solutions. The formulas permit a discussion of energy transfer from excited aromatic amino acids to cystines and/or of chemical reactions between excited tryptophans or tyrosines and cystines. The results are discussed with regard to general aspects of the photo-biochemistry of enzymes.     

INTERACTION BETWEEN TYROSINE AND DIVALENT SULFUR IN FLUORESCENCE QUENCHING AND IN THE PHOTOCHEMISTRY OF RIBONUCLEASE

Abstract— –Ribonuclease is inactivated in aqueous solution by u.v. light through different mechanisms according to whether divalent sulfur or aromatic amino acids are the primary light absorbers. At 284 nm, absorbed mainly by tyrosine, the presence of O₂ inhibits photoinactivation and H₂S formation, but does less so at 254 or 313 nm. Based on data with model substances containing disulfide groups a mechanism is indicated in which excited tyrosine is quenched through electron transfer to adjacent divalent sulfur within the protein. Disulfide compounds are shown to be very efficient quenchers of tyrosine fluorescence.     

CONCERNING THE PRODUCTION OF FREE RADICALS IN PROTEINS BY ULTRAVIOLET LIGHT

Abstract— Using electron paramagnetic resonance techniques, the response to u.v. light of several solid proteins and model compounds has been studied in vacuum and at low temperature. Emphasis has been placed on determining the response as a function of the wavelength (Λ 250 nm) and intensity of the incident radiation. Correlation of the parameters of radical production with sample luminescence, molecular amino-acid sequence and tertiary structure, light intensity and total irradiation time has allowed some insight into the mechanisms of free radical formation.
It is shown that the details of amino acid composition, sequence and the tertiary structure of a protein are important in determining both the rate of, and the mechanism for, radical production (two basic mechanisms are described), and in determining the conditions under which sulfur-type radicals can be produced. The results are related to enzyme inactivation and to the u.v. stability of proteins generally.     

游离芳香氨基酸和半胱氨酸对光诱导高铁肌红蛋白还原的影响

肌红蛋白(Myoglobin,Mb)中血红素辅基不仅具有储氧功能,也能吸收特定波长的光而影响蛋白功能表达。实验发现,部分游离的氨基酸对光诱导高铁肌红蛋白(metM b,Fe(III)-Mb)的还原过程及还原程度都有重要作用,因此,本文采用紫外-可见吸收光谱、圆二色谱、三维荧光光谱法,在光照体系中加入拥挤试剂来模拟细胞内拥挤环境,研究芳香氨基酸[色氨酸(Trp)、苯丙氨酸(Phe)、酪氨酸(Tyr)、半胱氨酸(Cys)]对metM b还原的影响。结果表明,含-OH或-SH的氨基酸(Tyr、Cys)能使metM b发生较好的光还原,无-OH或-SH基团的氨基酸(Trp、Phe)对metM b的光还原作用较弱,氨基酸促进metM b光还原的整个过程可能是分子间电子转移的过程。metM b在拥挤环境聚蔗糖70(Ficoll 70)中的光诱导还原程度比在稀溶液中高,拥挤试剂Ficoll70对蛋白的二级结构起保护作用,能够稳定血红素微环境。     

Photolysis of poly(amino acid)s at 77K: An ESR study

The mechanism of the ultraviolet (λ > 250 nm) degradation of poly(amino acid)s has been studied by ESR spectroscopy at 77 K. In the aliphatic poly(amino acid)s of glycine, alanine and valine, absorption of energy occurs predominantly in the peptide group, and the initial degradation reaction is scission of the CONH bond. The imino radical, ·NHCHR, abstracts the main chain H from the CHR group, or the tertiary H from valine, to give secondary carbon radicals. The acyl radical, CHRCO·, readily loses CO to form a chain-end radical, CHR·. The aromatic poly(amino acid)s of phenylalanine and tyrosine absorb energy mainly in the phenyl chromophore and bond scission occurs in the side chain. The mechanism of photolysis of the poly(amino acid)s differs from that of the N-acetyl amino acids (except for tyrosine) due to the presence of the labile carboxyl group.     

ESR spectrometric characterization of the methyl viologen dosimeter in poly(vinyl alcohol) film

A dosimeter of poly(vinyl alcohol) (PVA) film containing methyl viologen dichloride (MV²⁺ (Cl^-)₂) was characterized by means of ESR and u.v. spectrometries. γ-irradiation of the MV²⁺-PVA dosimeter induced one-electron reduction of MV^2+· to thecation radical (MV⁺), thus giving rise to blue coloration. The resulting MV^+· showed an ESR signal with a g-factor of 2.0031. The yield of MV^+· at a given radiation dose was estimated from duplicate integral of the ESR first-derivative spectra by reference to 1,1'-diphenyl-2-picrylhydrazyl (DPPH). The yield of MV^+· thus estimated increased linearly with increasing the radiation dose up to about 1.4 Mrad. The ESR spectrometry of MV^+· showed a linear correlation with the u.v. spectrometric method reported previously.     

THE ACTION OF U.V. LIGHT OF VARIOUS WAVELENGTHS ON PAPAIN

Abstract— Papain, prepared according to Kimmel and Smith is activated by irradiation with u.v. light of 254, 280 and 313 nm (φ_A= 0·022 ± 10 per cent). This activation is caused by the reductive splitting of a mixed disulfide in position 25. This disulfide is split with higher probability than any of the three structural disulfide links. This selectivity is likely caused by specific reduction of the mixed disulfide by thiol groups produced elsewhere in the molecule, although specific reduction by direct photochemical processes cannot be completely excluded on the basis of the data available. The quantum yields for destruction of structural cystine residues at the three wavelengths are comparable with the yields of cystine destruction in other proteins. The data also confirm that quanta absorbed by aromatic amino acid residues contribute to cystine destruction. In contrast to other enzymes with structural disulfide bonds, however, no correlation was found between the destruction of disulfide links and loss in activity. The results suggest that the mechanism of papain inactivation is not only dependent on the wavelength, but also on the dose.     

Intermediates of radiation-induced polymerisation of maleimides studied by ESR

Radicals produced by radiolysis and photolysis of maleimides (maleimide, N-methylmaleimide, N-ethylmaleimide, N-phenyl-maleimide) in bulk have been identified by ESR spectroscopy. γ-Irradiation of maleimides yields up to five different radicals depending on the type of maleimide. Because of the great linewidth of powder ESR spectra, the hyperfine splittings are determined by means of computer simulation. For N-alkyl maleimides the starting species of polymerisation are formed by abstraction of a H-atom from the alkyl group in radiolysis as well as in photolysis. The structure of the propagating radical shows that polymerisation proceeds via the ethylenic double bond. The detection of maleimide ions makes participation of these ions in polymerisation conceivable. Radiolysis of maleimide and N-phenylmaleimide yields the same type of radicals whereas only ions could be detected after u.v.-irradiation.     

STUDIES OF THE ROLE OF THE COAT PROTEIN IN THE U.V. PHOTOINACTIVATION OF U(1) AND U(2) STRAINS OF TMV*

Abstract— Two properties of the u.v. inactivation process in the u.v. sensitive U(2) strain have been investigated: (1) The increased binding of protein to RNA induced by irradiation of the virus at 254 nm; (2) The action spectrum for u.v. inactivation of U(2) between 250 nm and 285 nm. The extent of the u.v. induced binding of protein to RNA is similar to that previously found in the resistant U(1) strain, thereby eliminating the possibility that the capacity for this binding phenomenon bears any correlation to the difference in u.v. sensitivities of these two viruses at 254 nm. The results indicate that the radiation induced interaction of protein and RNA in U(1) and U(2) are probably similar. The action spectrum for U(2) resembles the absorption spectrum of the RNA between 250 nm and 285 nm implicating the RNA as the primary absorber leading to inactivation of the virus in this region of the spectrum. Quantum yields calculated for U(2) virus and free TMV-RNA irradiated at 254 nm reveal that the irradiated free RNA may be as much as 1–4 times more sensitive to inactivation at this wavelength than RNA in the intact virus. It is concluded that the coat protein of U(2) probably offers some protection to the enclosed RNA against u.v. damage at 254 nm, therefore, the difference in u.v. sensitivity between U(1) and U(2) TMV at this wavelength is a consequence of a difference in the degree of protection offered by the respective coat proteins to the enclosed RNA.     

THE MODIFICATION OF RIBONUCLEASE-A BY NEARULTRAVIOLET IRRADIATION IN THE PRESENCE OF PSORALEN

Abstract— Ribonuclease A is inactivated when irradiated under oxygen by UV-A light in the presence of psoralen. The rate of inactivation is greatly reduced by sodium azide. ascorbate or nitrogen, whereas the substrate gives only very limited protection. A ribonuclease sample modified to 40% remaining activity presented a significant modification of amino acid residues known to be sensitive to oxidation and 1.4 mol of bound psoralen per mol of protein. The secondary structure of the enzyme, as assessed by circular dicroism was not changed by irradiation; neither was aggregation of the enzyme to a higher mol wt evident. Studies on the tryptic peptides fractionated by high performance liquid chromatography showed that the photomodification occurs with very low selectivity. All the five peptides containing hystidine, tyrosine and methionine residues were greatly modified, although two, those containing histidine residues 12 and 119 in the sequence, amino acids known to be involved in the catalytic activity of ribonuclease. are modified to a greater extent. The protein bound psoralen. revealed by radioactivity in the HPLC eluate, was not found associated to only one or few peptide peaks but spread on a large zone of elution.     

PATTERNS OF NUCLEIC ACID AND PROTEIN SYNTHESIS DURING MODIFICATION OF LETHAL ULTRAVIOLET LESION

Abstract— We have shown previously that the viability of E. coli B.U.^- and E. coli B. try^-could be restored after u.v.-irradiation if post-irradiation incubation took place in the presence of chloramphenicol or in the absence of an essential metabolite. By way of contrast, the viability of the u.v.-irradiated E. coli K.₁₂ meth^- decreased rapidly during post-irradiation incubation in the presence of chloramphenicol or in the absence of methionine. During the study of the biosynthesis of nucleic acids and protein in the above strains we made the following observations.
Protein synthesis was permanently inhibited in both amino acid requiring strains during post-irradiation incubation in the absence of the respective essential metabolite. In E. coli B.U.^- a slow synthesis of protein could be observed even if post-irradiation incubation took place in the absence of uracil.
DNA synthesis was completely and permanently inhibited in both E. coli B. try^- and E. coli K.₁₂ meth^- during post-irradiation incubation in the absence of the respective essential amino acid. In E. coli B.U.^-, however, DNA synthesis resumed after a prolonged lag even if the bacteria were incubated after u.v.-irradiation in the absence of uracil.
RNA synthesis was completely and permanently inhibited in both E. coli B. mutants, the uracil requiring and the tryptophan requiring, if they were incubated after irradiation in the absence of uracil and tryptophan respectively. In E. coli K.₁₂ meth^- a small amount of RNA is synthesized during post-irradiation incubation in the absence of the essential amino acid.     

PHOTOCHEMISTRY OF BIOLOGICAL MOLECULES – II. PHOTOLYSIS OF DIPEPTIDES IN THE SOLID STATE

Abstract— Photolysis with light of 2537 Å of a series of aliphatic dipeptides in the solid state has been shown to lead to bond rupture and free radical formation. The structures of the radicals have been determined by ESR techniques and in general, the free electron has been shown to reside on the carbon atom attached to the nitrogen atom of the peptide bond. Dipeptides containing phenylalanine residues show ESR spectra typical of the free amino-acid in the terminal position.     

Sonochemistry of aqueous solutions of amino acids and peptides. A spin trapping study

The sonolysis of argon-saturated neutral aqueous solutions of several amino acids and peptides was investigated by ESR and spin trapping. The water-soluble non-volatile spin trap, 3,5-dibromonitrosobenzene sulfonate, was found to be particularly useful for ESR and spin trapping investigations of sonochemical reactions. By comparison with analogous experiments in which hydroxyl radicals were generated by u.v.-photolysis of solutions containing hydrogen peroxide, the amino acid and peptide radicals produced by sonolysis could be identified. These observations can be explained by the reactions of hydrogen atoms and hydroxyl radicals which are the primary products of the sonolysis of water.     

Site‐directed analysis on protein hydrophobicity

Hydrophobicity of a protein is considered to be one of the major intrinsic factors dictating the protein aggregation propensity. Understanding how protein hydrophobicity is determined is, therefore, of central importance in preventing protein aggregation diseases and in the biotechnological production of human therapeutics. Traditionally, protein hydrophobicity is estimated based on hydrophobicity scales determined for individual free amino acids, assuming that those scales are unaltered when amino acids are embedded in a protein. Here, we investigate how the hydrophobicity of constituent amino acid residues depends on the protein context. To this end, we analyze the hydration free energy—free energy change on hydration quantifying the hydrophobicity—of the wild‐type and 21 mutants of amyloid‐beta protein associated with Alzheimer's disease by performing molecular dynamics simulations and integral‐equation calculations. From detailed analysis of mutation effects on the protein hydrophobicity, we elucidate how the protein global factor such as the total charge as well as underlying protein conformations influence the hydrophobicity of amino acid residues. Our results provide a unique insight into the protein hydrophobicity for rationalizing and predicting the protein aggregation propensity on mutation, and open a new avenue to design aggregation‐resistant proteins as biotherapeutics. © 2014 Wiley Periodicals, Inc.     

Long-lived 1-adamantaneimminyl free radical as studied by ESR in 1-cyanoadamantane

The products of γ-irradiation of 1-cyanoadamantane were studied as a function of temperature by ESR spectroscopy. 1-adamantyl, 1-cyanoadamantyl and 1-adamantaneimminyl free radicals are formed in proportions depending on temperature. The low-temperature major product, 1-cyanoadamantyl transforms upon heating into the imminyl free radical which can be used as a spin label for studying molecular dynamics in glassy crystalline 1-cyanoadamantane.     

Pulse radiolysis studies of short-lived species in solid amino acids as precursors of radicals and detected by ESR

The aim of the study was to bring closer solid state radiation chemistry and ESR spectroscopy by looking for precursors of free radicals which give ESR signals. It has been performed using time-resolved spectrophotometry (pulse radiolysis of the solid state) and diffuse reflection spectrophotometry. Alanine has been especially considered as the most investigated amino acid, important for radiation dosimetry. Absorption of the transient (Λ maximum at 460 nm) is identified as the species during deamination. The stable absorption spectrum with the Λ maximum at 345 nm is due to the same radical as the one detected by ESR. Other amino acids: valine, threonine, glutamine and arginine show similar behaviour: microsecond spectrum of the intermediate appears always at longer wavelenghts. The transient spectrum changes into stable absorption in UV of a lower wavelenght. Along with the optical spectrum, the ESR spectrum appears, of similar stability. Also, other features indicate that the same radical is responsible for both the electronic and ESR spectrum. Some amino acids, like methionine give intensive transient absorption in the microsecond range but no ESR signal, after completion of consecutive fast reactions. In that case any optical absorption is due to the stable product of radiolysis, i.e. compounds with paired electrons only.     

PHYTOCHROME CONVERSION BY ULTRAVIOLET LIGHT

Abstract— Light absorbed primarily by the protein of phytochrome is active in transforming both the red and far-red absorbing forms. P _r and P _fr. The ratio of quantum yields for the conversions of P _r and P _fr by u.v. radiation (φ_r/φ_fr)_u.v.= 1.5 and does not differ significantly from the ratio obtained with red and far-red light absorbed directly by the chromophores (φ_r/φ_fr)v_vis. Thus, the efficiency of energy transfer from protein to chromophore is essentially the same for both forms of the chromoprotein. The ratio of the relative quantum yields for u.v. and visible light (φ^r)^u.v./(φ^r)^vis was 0.32 indicating that 30–35 per cent of the light energy absorbed by the protein was transferred to the chromophore.     

L-tryptophan radical cation electron spin resonance studies: connecting solution-derived hyperfine coupling constants with protein spectral interpretations

Fast-flow electron spin resonance (ESR) spectroscopy has been used to detect a free radical formed from the reaction of l-tryptophan with Ce (4+) in an acidic aqueous environment. Computer simulations of the ESR spectra from l-tryptophan and several isotopically modified forms strongly support the conclusion that the l-tryptophan radical cation has been detected by ESR for the first time. The hyperfine coupling constants (HFCs) determined from the well-resolved isotropic ESR spectra support experimental and computational efforts to understand l-tryptophan's role in protein catalysis of oxidation-reduction processes. l-Tryptophan HFCs facilitated the simulation of fast-flow ESR spectra of free radicals from two related compounds, tryptamine and 3-methylindole. Analysis of these three compounds' beta-methylene hydrogen HFC data along with equivalent l-tyrosine data has led to a new computational method that can distinguish between these two amino acid free radicals in proteins without dependence on isotope labeling, electron-nuclear double resonance, or high-field ESR. This approach also produces geometric parameters (dihedral angles for the beta-methylene hydrogens) that should facilitate protein site assignment of observed l-tryptophan radicals as has been done for l-tyrosine radicals.