Multivariate analysis of 2-DE protein patterns--practical approaches

Practical approaches to the use of multivariate data analysis of 2-DE protein patterns are demonstrated by three independent strategies for the image analysis and the multivariate analysis on the same set of 2-DE data. Four wheat varieties were selected on the basis of their baking quality. Two of the varieties were of strong baking quality and hard wheat kernel and two were of weak baking quality and soft kernel. Gliadins at different stages of grain development were analyzed by the application of multivariate data analysis on images of 2-DEs. Patterns related to the wheat varieties, harvest times and quality were detected on images of 2-DE protein patterns for all the three strategies. The use of the multivariate methods was evaluated in the alignment and matching procedures of 2-DE gels. All the three strategies were able to discriminate the samples according to quality, harvest time and variety, although different subsets of protein spots were selected. The explorative approach of using multivariate data analysis and variable selection in the analyses of 2-DEs seems to be promising as a fast, reliable and convenient way of screening and transforming many gel images into spot quantities.     

Orthogonal signal correction, wavelet analysis, and multivariate calibration of complicated process fluorescence data

In this paper, multivariate calibration of complicated process fluorescence data is presented. Two data sets related to the production of white sugar are investigated. The first data set comprises 106 observations and 571 spectral variables, and the second data set 268 observations and 3997 spectral variables. In both applications, a single response, ash content, is modelled and predicted as a function of the spectral variables. Both data sets contain certain features making multivariate calibration efforts non-trivial. The objective is to show how principal component analysis (PCA) and partial least squares (PLS) regression can be used to overview the data sets and to establish predictively sound regression models. It is shown how a recently developed technique for signal filtering, orthogonal signal correction (OSC), can be applied in multivariate calibration to enhance predictive power. In addition, signal compression is tested on the larger data set using wavelet analysis. It is demonstrated that a compression down to 4% of the original matrix size — in the variable direction — is possible without loss of predictive power. It is concluded that the combination of OSC for pre-processing and wavelet analysis for compression of spectral data is promising for future use.     

Multivariate analysis of remote laser-induced breakdown spectroscopy spectra using partial least squares,principal component analysis,and related techniques

Quantitative analysis with laser-induced breakdown spectroscopy traditionally employs calibration curves that are complicated by chemical matrix effects. These chemical matrix effects influence the laser-induced breakdown spectroscopy plasma and the ratio of elemental composition to elemental emission line intensity. Consequently, laser-induced breakdown spectroscopy calibration typically requires a priori knowledge of the unknown, in order for a series of calibration standards similar to the unknown to be employed. In this paper, three new Multivariate Analysis techniques are employed to analyze the laser-induced breakdown spectroscopy spectra of 18 disparate igneous and highly-metamorphosed rock samples. Partial Least Squares analysis is used to generate a calibration model from which unknown samples can be analyzed. Principal Components Analysis and Soft Independent Modeling of Class Analogy are employed to generate a model and predict the rock type of the samples. These Multivariate Analysis techniques appear to exploit the matrix effects associated with the chemistries of these 18 samples.     

Determination of phenolic compounds and authentication of PDO Lambrusco wines by HPLC-DAD and chemometric techniques

This work proposes a fast and simple method for detection and quantification of phenolic compounds in PDO Lambrusco wines using HPLC-DAD and chemometric techniques. Samples belonging to three different varieties of Lambrusco (Grasparossa, Salamino and Sorbara) were analyzed to provide a methodology appropriate for routine analysis. Given the high complexity of the sample and the coelution among chromatographic peaks, the use of chemometric techniques to extract the information of the individual eluting compounds was needed. Multivariate curve resolution-alternating least squares (MCR-ALS) allowed the resolution of the chromatographic peaks obtained and the use of this information for the quantification of the phenolic analytes in the presence of interferences. Use of multiset analysis and local rank/selectivity information was proven to be crucial for the correct resolution and quantification of compounds. The quantitative data provided by MCR-ALS about the phenolic targets and additional compounds present in the samples analyzed provided wine composition profiles, which were afterwards used to distinguish among wine varieties. Principal component analysis applied to the wine profiles allowed characterizing the wines according to their varieties.     

Improvement of multivariate calibration techniques applied to 1-to-N component mixtures through an optimized experimental design

This work describes a novel experimental design aimed at building a calibration set constituted by samples containing a different number of components. The algorithm performs a reiteration process to maintain the number of samples at the lower value as possible and to ensure an homogeneous presence of all the concentration levels. The mixture design was applied to a drug system composed by one-to-four components in different combination. The resolution of the system was performed by three multivariate UV spectrophotometric methods utilizing principal component regression (PCR) and partial last squares (PLS1 and PLS2) algorithms. The calibration set was composed by 61 references on four concentration levels, including 15 samples for each quaternary, ternary and binary composition and 16 one-component samples. The calibration models were optimized through a careful selection of number of factors and wavelength zones, in such a way as to remove interferences from instrumental noise and excipients present in the pharmaceutical formulations. The prediction power of the regression models were verified and compared by analysis of an external prediction set. The models were finally used to assay pharmaceutical specialities containing the studied drugs in one-to-four formulations.     

Multivariate concentration determination using principal component regression with residual analysis

Data analysis is an essential tenet of analytical chemistry, extending the possible information obtained from the measurement of chemical phenomena. Chemometric methods have grown considerably in recent years, but their wide use is hindered because some still consider them too complicated. The purpose of this review is to describe a multivariate chemometric method, principal component regression, in a simple manner from the point of view of an analytical chemist, to demonstrate the need for proper quality-control (QC) measures in multivariate analysis and to advocate the use of residuals as a proper QC method.     

Near-infrared spectroscopy and multivariate calibration for the quantitative determination of certain properties in the petrochemical industry

Near-infrared (NIR) spectroscopy in conjunction with chemometric techniques allows on-line monitoring in real time, which can be of considerable use in industry. If it is to be correctly used in industrial applications, generally some basic considerations need to be taken into account, although this does not always apply. This study discusses some of the considerations that would help evaluate the possibility of applying multivariate calibration in combination with NIR to properties of industrial interest. Examples of these considerations are whether there is a relation between the NIR spectrum and the property of interest, what the calibration constraints are and how a sample-specific error of prediction can be quantified. Various strategies for maintaining a multivariate model after it has been installed are also presented and discussed.     

Crude Oil Model Emulsion Characterised by means of Near Infrared Spectroscopy and Multivariate Techniques

Water-in-oil emulsions are investigated by means of multivariate analysis of near infrared (NIR) spectroscopic profiles in the range 1100 — 2250 nm. The oil phase is a paraffin-diluted crude oil from the Norwegian Continental Shelf. The influence of water absorption and light scattering of the water droplets are shown to be strong. Despite the strong influence of the water phase, the NIR technique is still capable of predicting the composition of the investigated oil phase.     

Simultaneous spectrophotometric determination of ethinylestradiol and levonorgestrel by partial least squares and principal component regression multivariate calibration

Two spectrophotometric methods for the determination of Ethinylestradiol (ETE) and Levonorgestrel (LEV) by using the multivariate calibration technique of partial least square (PLS) and principal component regression (PCR) are presented. In this study the PLS and PCR are successfully applied to quantify both hormones using the information contained in the absorption spectra of appropriate solutions. In order to do this, a calibration set of standard samples composed of different mixtures of both compounds has been designed. The results found by application of the PLS and PCR methods to the simultaneous determination of mixtures, containing 4–11 μg ml⁻¹ of ETE and 2–23 μg ml⁻¹ of LEV, are reported. Five different oral contraceptives were analyzed and the results were very similar to that obtained by a reference liquid Chromatographic method.     

Chemometric data analysis of pollutants in wastewater—a case study

In this study, chemometric techniques such as cluster analysis (CA), discriminant analysis (DA), principal component analysis (PCA) and partial least squares (PLS) were used to analyse the wastewater dataset to identify the factors which affect the composition of sewage of domestic origin, spatial and temporal variations, similarity/dissimilarity among the wastewater characteristics of cis- and trans-drains and discriminating variables. Samples collected from 24 wastewater drains in Lucknow city and from three sites on Gomti river in the month of January/February, May, August and November during the period of 5 years (1994-1999) were characterized for 32 parameters. The multivariate techniques successfully described the similarities/dissimilarities among the sewage drains on the basis of their wastewater characteristics and sources signifying the effect of routine domestic/commercial activities in respective drainage areas. Spatial and seasonal variations in wastewater composition were also determined successfully. CA generated six groups of drains on the basis of similar wastewater characteristic. PCA provided information on seasonal influence and compositional differences in sewage generated by domestic and industrial waste dominated drains and showed that drains influenced by mixed industrial effluents have high organic pollution load. DA rendered six variables (TDS, alkalinity, F, TKN, Cd and Cr) discriminating between cis- and trans-drains. PLS-DA showed dominance of Cd, Cr, NO₃, PO₄ and F in cis-drains wastewater. The results suggest that biological-process based STPs could treat wastewater both from the cis- as well as trans-drains, however, prior removal of toxic metals will be required from the cis-drains sewage. Further, seasonal variations in wastewater composition and pollution load could be the guiding factor for determining the STPs design parameters. The information generated would be useful in selection of process type and in designing of the proposed sewage treatment plants (STPs) for safe disposal of wastewater.     

氨基酸结构描述子矢量VHSE及其在肽QSAR中的应用

从20种天然氨基酸的50个物化性质出发，按照疏水、立体和电性特征将其分类后分别进行主成分分析，并将产生的得分矢量即VHSE(principal component score vector of hydrophilicity,steric，and electronic properties)作为氨基酸结构描述子用于肽的定量构效关系研究。与已有方法相比，VHSE描述子具有物化意义明确、结果更易解释等特点。应用该描述子并结合逐步回归变量筛选和偏最小二乘建模方法，在对苦味二肽和血管舒缓激肽促进剂等体系的定量构效关系研究中，均取得了优于已有文献的结果。     

偏最小二乘法及主组分回归法用于药物组分的测定

本文研究了多元校准方法——偏最小二乘法(PLS)和主组份回归法(PCR)在药物多组份光度分析中的应用,获得了较满意的结果。而且在系列校准样品的实验设计、交叉证实法确定最佳因子数以及空缺组份体系的分析等方面进行了探讨。     

Metabolomics of meat exudate: Its potential to evaluate beef meat conservation and aging

In this study we analyzed the exudate of beef to evaluate its potential as non invasive sampling for nuclear magnetic resonance (NMR) based metabolomic analysis of meat samples. Exudate, as the natural juice from raw meat, is an easy to obtain matrix that it is usually collected in small amounts in commercial meat packages. Although meat exudate could provide complete and homogeneous metabolic information about the whole meat piece, this sample has been poorly studied. Exudates from 48 beef samples of different breeds, cattle and storage times have been studied by ¹H NMR spectroscopy. The liquid exudate spectra were compared with those obtained by High Resolution Magic Angle Spinning (HRMAS) of the original meat pieces. The close correlation found between both spectra (>95% of coincident peaks in both registers; Spearman correlation coefficient = 0.945) lead us to propose the exudate as an excellent alternative analytical matrix with a view to apply meat metabolomics. 60 metabolites could be identified through the analysis of mono and bidimensional exudate spectra, 23 of them for the first time in NMR meat studies. The application of chemometric tools to analyze exudate dataset has revealed significant metabolite variations associated with meat aging. Hence, NMR based metabolomics have made it possible both to classify meat samples according to their storage time through Principal Component Analysis (PCA), and to predict that storage time through Partial Least Squares (PLS) regression.     

多元曲线分辨等方法和红外光谱用于二硝基五亚甲基四胺的合成反应机理研究

通过红外光谱在线监测强酸催化下硝酰胺、甲醛和氨水合成二硝基五亚甲基四胺(DPT)的反应过程, 利用渐进因子分析(EFA)、直观推导式演进特征投影法(HELP)和多元曲线分辨-交替最小二乘法(MCR-ALS)等化学计量学方法对反应过程获得的红外光谱信息进行解析, 得到了各组分纯物质的浓度变化曲线和对应的红外光谱, 并把多元曲线分辨-交替最小二乘法与直观推导式演进特征投影法的分析结果进行比较, 得出可相互验证的一致结论, 以此推测出该反应合理的反应机理. 化学计量学方法对在线红外光谱信息的分辨可以快速有效地反映DPT合成过程中各组分的浓度和红外光谱变化情况, 对其反应机理研究具有重要指导意义.