Theoretical Investigation on the Origin of Yellow‐Green Firefly Bioluminescence by Time‐Dependent Density Functional Theory

The question whether the emitter of yellow‐green firefly bioluminescence is the enol or keto‐constrained form of oxyluciferin (OxyLH₂) still has no definitive answer from experiment or theory. In this study, Arg220, His247, adenosine monophosphate (AMP), Water324, Phe249, Gly343, and Ser349, which make the dominant contributions to color tuning of the fluorescence, are selected to simulate the luciferase (Luc) environment and thus elucidate the origin of firefly bioluminescence. Their respective and compositive effects on OxyLH₂ are considered and the electronic absorption and emission spectra are investigated with B3LYP, B3PW91, and PBE1KCIS methods. Comparing the respective effects in the gas and aqueous phases revealed that the emission transition is prohibited in the gas phase but allowed in the aqueous phase. For the compositive effects, the optimized geometry shows that OxyLH₂ exists in the keto(?1) form when Arg220, His247, AMP, Water324, Phe249, Gly343, and Ser349 are all included in the model. Furthermore, the emission maximum wavelength of keto(?1)+Arg+His+AMP+H₂O+Phe+Gly+Ser is close to the experimental value (560 nm). We conclude that the keto(?1) form of OxyLH₂ is a possible emitter which can produce yellow‐green bioluminescence because of the compositive effects of Arg220, His247, AMP, Water324, Phe249, Gly343, and Ser349 in the luciferase environment. Moreover, AMP may be involved in enolization of the keto(?1) form of OxyLH₂. Water324 is indispensable with respect to the environmental factors around luciferin (LH₂).     

Tracking Pathogen Infections by Time‐Resolved Chemical Proteomics

Studying the dynamic interaction between host cells and pathogen is vital but remains technically challenging. We describe herein a time‐resolved chemical proteomics strategy enabling host and pathogen temporal interaction profiling (HAPTIP) for tracking the entry of a pathogen into the host cell. A novel multifunctional chemical proteomics probe was introduced to label living bacteria followed by in vivo crosslinking of bacteria proteins to their interacting host‐cell proteins at different time points initiated by UV for label‐free quantitative proteomics analysis. We observed over 400 specific interacting proteins crosslinked with the probe during the formation of Salmonella‐containing vacuole (SCV). This novel chemical proteomics approach provides a temporal interaction profile of host and pathogen in high throughput and would facilitate better understanding of the infection process at the molecular level.     

Ultrafast Dynamics Probed by the Time‐Resolved Anisotropy Measurements

In this paper, we shall show that in order to effectively observe the quantum beat due to vibrational coherence by the anisotropy measurement, it is necessary to perform the frequency‐resolved measurement in the transient absorption. It is found that the quantum beat due to vibrational coherence cannot be observed if the ultrafast processes under observation do not involve an electronic transition. In order to effectively observe the quantum beat due to vibronic coherence, it is necessary to perform the frequency‐integrated time‐resolved anisotropy measurement. We also show that it is usually difficult to obtain accurate dynamics information from the time‐resolved anisotropy measurement.     

Ultrafast Dynamics of o‐Bromofluorobenzene Studied by Time‐Resolved Photoelectron Imaging

Photodissociation dynamics and rotational wave packet coherences of o‐bromofluorobenzene are studied by femtosecond time‐resolved photoelectron imaging (see figure). The decay of different photoelectron rings shows the population decay of states from which the lifetimes of different states are determined. The variation of photoelectron angular distributions reflects the evolution of rotational coherences.

     

Time‐Resolved FTIR Emission Spectroscopy of Transient Radicals

Fourier Transform spectroscopy with 10^?8 second time resolution for recording IR emission spectra has been developed as an efficient means for detecting previously unknown vibrational modes of transient radicals. 193 nm photodissociation of a precursor molecule is used to generate vibrationally excited radicals, from which IR emission is recorded with time and spectral resolution. Assignment of the spectra is performed using information obtained through multiple precursors, isotopic substitution, time dependence of emission intensity, theoretical calculations, and 2‐dimensional cross‐spectra correlation analysis. The radicals vinyl, cyanovinyl, and OCCN have been studied with many vibrational modes identified.     

Time‐Resolved Energetics of Photoprocesses in Prokaryotic Phytochrome‐Related Photoreceptors

Time‐resolved photoacoustics (PA) is uniquely able to explore the energy landscape of photoactive proteins and concomitantly detects light‐induced volumetric changes (ΔV) accompanying the formation and decay of transient species in a time window between ca. 20 ns and 5 μs. Here, we report PA measurements on diverse photochromic bilin‐binding photoreceptors of prokaryotic origin: (1) the chromophore‐binding GAF3 domain of the red (R)/green (G) switching cyanobacteriochrome 1393 (Slr1393g3) from Synechocystis; (2) the red/far red (R/FR) Synechocystis Cph1 phytochrome; (3) full‐length and truncated constructs of Xanthomonas campestris bacteriophytochrome (XccBphP), absorbing up to the NIR spectral region. In almost all cases, photoisomerization results in a large fraction of energy dissipated as heat (up to 90%) on the sub‐ns scale, reflecting the low photoisomerization quantum yield (<0.2). This “prompt” step is accompanied by a positive ΔV₁ = 5–12.5 mL mol^?1. Formation of the first intermediate is the sole process accessible to PA, with the notable exception of Slr1393g3‐G for which ΔV₁ = +4.5 mL mol^?1 is followed by a time‐resolved, energy‐conserving contraction ΔV₂ = ?11.4 mL mol^?1, τ₂ = 180 ns at 2.4°C. This peculiarity is possibly due to a larger solvent occupancy of the chromophore cavity for Slr1393g3‐G.     

Luminescent Terbium Protein Labels for Time‐Resolved Microscopy and Screening

Brilliance of terbium : Heterodimeric conjugates of trimethoprim covalently linked to sensitized terbium chelates bind to Escherichia coli dihydrofolate reductase fusion proteins with nanomolar affinity (see picture). Terbium luminescence enables sensitive and time‐resolved detection of labeled proteins in vitro and on the surface of living mammalian cells.

     

Integrating Time‐Resolved Imaging Information by Single‐Luminophore Dual Thermally Activated Delayed Fluorescence

The fact that the lifetime of photoluminescence is often difficult to access because of the weakness of the emission signals, seriously limits the possibility to gain local bioimaging information in time‐resolved luminescence probing. We aim to provide a solution to this problem by creating a general photophysical strategy based on the use of molecular probes designed for single‐luminophore dual thermally activated delayed fluorescence (TADF). The structural and conformational design makes the dual TADF strong in both diluted solution and in an aggregated state, thereby reducing sensitivity to oxygen quenching and enabling a unique dual‐channel time‐resolved imaging capability. As the two TADF signals show mutual complementarity during probing, a dual‐channel means that lifetime mapping is established to reduce the time‐resolved imaging distortion by 30–40 %. Consequently, the leading intracellular local imaging information is serialized and integrated, which allows comparison to any single time‐resolved signal, and leads to a significant improvement of the probing capacity.     

Conformational Relaxation of p‐Phenylenevinylene Trimers in Solution Studied by Picosecond Time‐Resolved Fluorescence

Two p‐phenylenevinylene (PV) trimers, containing 3′‐methylbutyloxyl (in MBOPV3) and 2′‐ethylhexyloxyl (in EHOPV3) side chains, are used as model compounds of PV‐based conjugated polymers (PPV) with the purpose of clarifying the origin of fast (picosecond time) components observed in the fluorescence decays of poly[2‐methoxy‐5‐(2′‐ethylhexyloxy)‐p‐phenylenevinylene] (MEH‐PPV). The fluorescence decays of MBOPV3 and EHOPV3 reveal the presence of similar fast components, which are assigned to excited‐state conformational relaxation of the initial population of non‐planar trimer conformers to lower‐energy, more planar conformers. The rate constant of conformational relaxation k_CR is dependent on solvent viscosity and temperature, according to the empirical relationship k_CR=aη_o^?α?exp(?αE_η/RT), where aη_o^?α is the frequency factor, η_o is the pre‐exponential coefficient of viscosity, E_η is the activation energy of viscous flow. The empirical parameter α, relating the solvent microscopic friction involved in the conformational change to the macroscopic solvent friction (α=1), depends on the side chain. The fast component in the fluorescence decays of MEH‐PPV polymers (PPVs), is assigned to resonance energy transfer from short to longer polymer segments. The present results call for revising this assignment/interpretation to account for the occurrence of conformational relaxation, concurrently with energy transfer, in PPVs.     

Structural Tracking of a Bimolecular Reaction in Solution by Time‐Resolved X‐Ray Scattering

Molecular movies : Time‐resolved X‐ray scattering provides direct structural information on an electronically excited complex while it is formed in the bimolecular reaction between excited octahydrogen[tetrakis‐μ‐diphosphito‐1κP:2κP′‐diplatinate](4‐) (PtPOP*) and thallium ions. In the exciplex one thallium(I) and two platinum(II) ions are found to be collinear.

     

Modulation of Spectrokinetic Properties of o‐Quinonoid Reactive Intermediates by Electronic Factors: Time‐Resolved Laser Flash and Steady‐State Photolysis Investigations of Photochromic 6‐ and 7‐Arylchromenes

A variety of differently substituted 6‐ and 7‐arylchromenes such as that depicted undergo photoinduced C? O bond cleavage to yield colored o‐quinonoid intermediates. A combined analysis of μs–ms (laser flash) and real‐time kinetic data show that the o‐quinonoid intermediates decay faster when the C2‐aryl and C6‐/C7‐aryl rings contain electron‐donating and electron‐accepting groups, respectively. Similarly, the decay occurs slowly for the reversed scenario, while intermediate decay rates are observed when both substituents are electron donating.

     

Quenching Mechanisms and Diffusional Pathways in Micellar Systems Unravelled by Time‐Resolved Magnetic‐Field Effects

Radical observation : Time‐resolved magnetic‐field effects yield a very detailed picture of electron‐transfer quenching in micelles and of the fate of the resulting radical‐ion pairs. The system xanthone/DABCO (A/D, see figure) permits a separation of the different static and dynamic quenching pathways and a distinction between bulk and surface diffusion.

     

Structural Determination of a Photochemically Active Diplatinum Molecule by Time‐Resolved EXAFS Spectroscopy

Metallica : A large contraction of the Pt? Pt bond in the triplet excited state of the photoreactive [Pt₂(P₂O₅H₂)₄]^4? ion is determined by time‐resolved X‐ray absorption spectroscopy (see picture). The strengthening of the Pt? Pt interaction is accompanied by a weakening of the ligand coordination bonds, resulting in an elongation of the platinum–ligand bond that is determined for the first time.

     

Stabilization of Large Adsorbates by Rotational Entropy: A Time‐Resolved Variable‐Temperature STM Study

Investigating the dynamics in an adlayer of the oligopyridine derivative 2‐phenyl‐4,6‐bis(6‐(pyridine‐2‐yl)‐4‐(pyridine‐4‐yl)pyridine‐2‐yl)pyrimidine (2,4′‐BTP) on Ag(111) by fast scanning tunneling microscopy (video‐STM), we found that rotating 2,4′‐BTP adsorbates coexist in a two‐dimensional (2D) liquid phase (β‐phase) in a dynamic equilibrium with static adsorbate molecules. Furthermore, exchange between an ordered phase (α‐phase) and β‐phase leads to fluctuations of the domain boundary on a time scale of seconds. Quantitative evaluation of the temperature‐dependent equilibrium between rotating and static adsorbates, evaluated from a large number of STM images, gains insight into energetic and entropic stabilization and underlines that the rotating adsorbate molecules are stabilized by an entropy contribution, which is compatible with that derived by using statistical mechanics. The general validity of the concept of entropic stabilization of rotating admolecules, favoring rotation already at room temperature, is tested for other typical small, mid‐size and large adsorbates.