Study of the tautomeric equilibrium of pyridoxine in 1,4-dioxane/water mixtures by 13C nuclear magnetic resonance. Thermodynamic characterization and solvent effects

A significant temperature dependence has been found for the (13)C NMR chemical shifts of pyridoxine in 10%, 20%, 30%, 40%, 50%, and 60% v/v 1,4-dioxane/water mixtures (pH = 7.0). The nuclei most sensitive to the temperature effect were C-3 and C-6 in all of the mixtures. This dependence has been explained on the basis of a thermally induced tautomeric equilibrium shift between the neutral and the dipolar forms of the pyridoxine molecule. The thermodynamic characterization of this tautomeric equilibrium, which interconverts quickly on the NMR time scale, has been achieved by considering the observed average (13)C NMR chemical shifts at different temperatures through fitting the experimental data to a theoretical curve. The fitting accuracy is greatly improved on using linear correlations between the average chemical shifts obtained from different nuclei at the same temperature. The methodology outlined above allows the DeltaH degrees value to be calculated for the tautomeric process and the chemical shifts of the pure extreme forms, i.e., neutral and dipolar, to be deduced. These values have been used to calculate the thermodynamic parameters of the tautomerization equilibrium in each dioxane/water mixture. The effect of solvent on the tautomeric equilibrium and the averaged chemical shift has been explained in terms of a multiparameter equation developed by Kamlet and Taft. The overall solvent effect is the sum of two different effects: the dipolarity and polarizability of the solvent and the ability of the solvent to act as a hydrogen-bond donor toward a solute.     

Protonation, tautomerization, and rotameric structure of histidine: a comprehensive study by magic-angle-spinning solid-state NMR

Histidine structure and chemistry lie at the heart of many enzyme active sites, ion channels, and metalloproteins. While solid-state NMR spectroscopy has been used to study histidine chemical shifts, the full pH dependence of the complete panel of (15)N, (13)C, and (1)H chemical shifts and the sensitivity of these chemical shifts to tautomeric structure have not been reported. Here we use magic-angle-spinning solid-state NMR spectroscopy to determine the (15)N, (13)C, and (1)H chemical shifts of histidine from pH 4.5 to 11. Two-dimensional homonuclear and heteronuclear correlation spectra indicate that these chemical shifts depend sensitively on the protonation state and tautomeric structure. The chemical shifts of the rare π tautomer were observed for the first time, at the most basic pH used. Intra- and intermolecular hydrogen bonding between the imidazole nitrogens and the histidine backbone or water was detected, and N-H bond length measurements indicated the strength of the hydrogen bond. We also demonstrate the accurate measurement of the histidine side-chain torsion angles χ(1) and χ(2) through backbone-side chain (13)C-(15)N distances; the resulting torsion angles were within 4° of the crystal structure values. These results provide a comprehensive set of benchmark values for NMR parameters of histidine over a wide pH range and should facilitate the study of functionally important histidines in proteins.     

Structure of neutral molecules and monoanions of selected oxopurines in aqueous solutions as studied by NMR spectroscopy and theoretical calculations

A methodology enabling investigation of a multicomponent tautomeric and acid-base equilibria by (13)C NMR spectroscopy supported by theoretical calculations has been proposed. The effectiveness of this method has been illustrated in a study of 2-oxopurine, 6-oxopurine (hypoxanthine), 8-oxopurine, and 2,6-dioxopurine (xanthine) in neutral and alkaline aqueous solutions. For each compound a series of (13)C NMR spectra were recorded at pH ranges in which neutral molecules, monoanions and/or dianions occurred in dynamic equilibrium. The carbon chemical shifts for these three forms of the investigated compounds were retrieved from the analysis of pH-dependence of the measured, dynamically averaged values of these parameters. The structures of several stable tautomers of the neutral and monoanionic oxopurine forms were predicted from theoretical calculations and nuclear magnetic shielding constants for (13)C nuclei in these tautomers were calculated. At both calculation steps (molecular geometry optimization and calculation of NMR parameters) the PBE1PBE/6-311++G(2d,p) level of theory was used. The populations of the most stable tautomers were determined from the experimental data analysis exploiting the fact that they were population-weighted averages of the chemical shifts of particular tautomers. It has been shown that only the oxo forms of the investigated oxopurines are present in aqueous solutions and that the determined populations in most cases remain in a qualitative agreement with the calculated free energies of the appropriate tautomers. The obtained results are in general agreement with other literature reports on oxopurine tautomerism and confirm importance of the hydration phenomena for the investigated systems. The data analysis has shown that the best compliance between theory and experiment is obtained when the hydration phenomenon is modeled by discrete hydration augmented by PCM (polarizable continuum solvation model).     

Factor analysis of deuterium isotope effects on 13C NMR chemical shifts in Schiff bases

We have analyzed deuterium isotope effects on (13)C chemical shifts in a series of o-hydroxy Schiff bases by applying factor analysis. Two orthogonal factors were obtained that explain about 80 and 10 % of the variance of the data. The numerical values of these factors can be related to 1H NMR chemical shifts of the proton involved in the intramolecular bonds delta(XH) (X = O or N). Such a relation allows one to identify clusters of compounds with different tautomeric forms of hydrogen bonding. Application of a similar approach to solution 13C NMR chemical shifts produces three important factors, which have a different structure to factors describing isotope effects. This illustrates well the different nature of chemical shifts and isotope effects. The three factors explain about 54, 15, and 13 % of variance. They can be rationalized and are strongly related to the electronic properties and location of substituents.     

First-principles calculation of 17O and 25Mg NMR shieldings in MgO at finite temperature: rovibrational effect in solids

The temperature dependence of (17)O and (25)Mg NMR chemical shifts in solid MgO have been calculated using a first-principles approach. Density functional theory, pseudopotentials, a plane-wave basis set, and periodic boundary conditions were used both to describe the motion of the nuclei and to compute the NMR chemical shifts. The chemical shifts were obtained using the gauge-including projector augmented wave method. In a crystalline solid, the temperature dependence is due to both (i) the variation of the averaged equilibrium structure and (ii) the fluctuation of the atoms around this structure. In MgO, the equilibrium structure at each temperature is uniquely defined by the cubic lattice parameters, which we take from experiment. We evaluate the effect of the fluctuations within a quasiharmonic approximation. In particular, the dynamical matrix, defining the harmonic Hamiltonian, has been computed for each equilibrium volume. This harmonic Hamiltonian was used to generate nuclear configurations that obey quantum statistical mechanics. The chemical shifts were averaged over these nuclear configurations. The results reproduce the previously published experimental NMR data measured on MgO between room temperature and 1000 degrees C. It is shown that the chemical shift behavior with temperature cannot be explained by thermal expansion alone. Vibrational corrections due to the fluctuations of atoms around their equilibrium position are crucial to reproduce the experimental results.     

1H and 13C NMR study of the enol–enolic tautomerism of some cyclic β-ketoaldehydes

Aldehyde (δCH) and enolic (δOH) proton chemical shifts, the corresponding spin–spin coupling constants (JCH,OH) and the ¹³C chemical shifts (δC) have been measured for three cyclic β-ketoaldehydes as a function of temperature. A tautomeric equilibrium has been shown to exist between the aldo–enol ( A ) and hydroxymethylene ketone ( B ) forms. The chemical shifts δCH δOH and δC for the two pure tautomeric forms A and B have been calculated. The enthalpy changes ΔH in the tautomeric process A ? B and the percentages of the tautomeric forms have been determined.     

2,4-二酮-5-咪唑烷基尿的~(15)N和~(13)C核磁共振研究

本实验测定了2.4-二酮-5-咪唑烷基尿的~(15)N和~(13)C NMR谱并确认了谱线归属。根据化学位移及其在脱质子化过程中的变化,讨论了化合物的互变异构平衡及立体构型的转化问题。结果表明,在溶液中此化合物以酮式结构(A)为主要构型。     

Thermodynamics of the solution equilibria of 3-hydroxypyridine and pyridoxine in water-dioxane mixtures

The thermodynamics of tautomeric and microscopic ionization equilibrium constants of 3-hydroxypyridine and pyridoxine have been determined in waterdioxane mixtures (0–70% weight fraction in dioxane) ranging from 10°C to 50°C. Generally, for both types of processes, the entropic contributions to the Gibbs energy predominate and this tendency increase concomitantly with the dioxane content in the media. The thermodynamic parameters are consistent with the corresponding values obtained from macroscopic ionization processes. An equation for the equilibrium constant K as a function of temperature and a solvent characteristic parameter is proposed to predict the K values throughout the whole range of the temperature and solvent compositions studied.     

Substituent influences on the stability of the ring and chain tautomers in 1,3-O,N-heterocyclic systems: characterization by 13C NMR chemical shifts, PM3 charge densities, and isodesmic reactions

Substituent effects on the stabilities of the ring and chain forms in a tautomeric equilibrium of five series of 2-phenyloxazolidines or -perhydro-1,3-oxazines possessing nine different substitutions at the phenyl moiety have been studied with the aid of 13C NMR spectroscopy and PM3 charge density and energy calculations. Reaction energies of the isodesmic reactions, obtained from the calculated energies of formation, show that electron-donating substituents stabilize both the chain and ring tautomers but the effect is stronger on the stability of the chain form than on that of the ring form. The 13C chemical shift changes induced by the phenyl substituents (SCS) were analyzed by several different single and dual substituent parameter approaches. The best correlations were obtained by equation SCS = rhoFsigmaF + rhoRsigmaR. In all cases the rhoF values and in most cases also the rhoR values were negative at both the C=N and C-2 carbons, indicating a reverse behavior of the electron density. This concept could be verified by the charge density calculations. The 13C chemical shifts of the C=N and C-2 carbons show a normal dependence on the charge density (q(tot)), but the charge density shows a reverse dependence on substitution. Correlation analysis of the 13C chemical shifts, solvent effect (CDCl3 vs DMSO-d6) on the NMR behavior as well as the effect of substituents on the electron densities and on the stabilities of the ring and chain tautomers show that the substituent dependence of the relative stability of the ring and chain tautomers in equilibrium is governed by several different electronic effects. At least intramolecular hydrogen bonding between the imine nitrogen and the hydroxyl group as well as polarization of the C=N bond seem to contribute in the chain form. Stereoelectronic and electrostatic effects are possible to explain the increase in stability of the ring form by electron-donating substituents.     

13C NMR spectra of s-triazolo-as-triazinones: Application to isomeric and tautomeric structure determination

¹³C NMR spectroscopic data are reported for the s-triazolo-as-triazinones of five isomeric series. Comparison of their ¹³C chemical shifts and CH coupling constants allows the determination of the type of ring junction of the two heterocycles, as well as the predominant tautomeric form in each system.     

A spectrochemometric approach to tautomerism and hydrogen-bonding in 3-acyltetronic acids

3-Acyltetronic acids bearing different 3- and 5-substituents have been examined focussing on tautomerism and inter- and intramolecular hydrogen-bonding properties of these β,β′-tricarbonyl compounds in solution as well as in the solid state. Spectroscopic methods like NMR, IR, Raman-spectroscopy as well as X-ray diffractometry and MAS-NMR for the solid state have been applied. In a solution of CDCl₃, the acids exist as cis/trans pair both involving the 3-acyl group in a ratio 60/40. The pair also involving the carbonyl group at C-4 is tautomeric and the most abundant, whereas the other isomer only shows one form with an exo-cyclic double bond. NMR and IR measurements are in agreement. In the solid state, only one of the four possible tautomers is found. DFT-calculations on the B3LYP/6-31G** level helped to verify the assignment of the IR- and NMR-spectra and yielded an estimation of the relative thermodynamic stabilities of the tautomers of several 3-acyltetronic acids. Low temperature NMR experiments gave an insight into the equilibria. Deuterium isotope effects on the ¹³C NMR chemical shifts have been observed for 5,5-dimethyl 3-pivaloyltetronic acid at low temperature in order to examine the fast internal equilibria.     

Quantum-chemical investigation of structure and reactivity of pyrazol-5-ones and their thio- and seleno-analogs: X. Solvent effect on the chemical shifts of nuclei in the molecules of 3-methylpyrazol-5-ones and 1-phenyl-3-methylchalcogenepyrazol-5-ones and characteristics of tautomeric equilibrium in these compounds

By quantum-chemical DFT/GIAO method chemical shifts of all nuclei in the NMR spectra of 3-methylpyrazol-5-one and 1-phenyl-3-methylchalcogenopyrazol-5-ones in chloroform and dimethyl sulfoxide were calculated and analyzed using various solvation models. Low sensitivity to solvent of the chemical shfts of ¹³C and ¹H nuclei (except for “acidic” protons) calculated in the framework of various continuum models is revealed. Discrete and discrete-continuum models reflect well deshielding of the active centers of H-complexation and chemical shifts of “acidic” protons of the studied pyrazolones in solutions. Optimization of geometry of pyrazolones in solutions only slightly improves the agreement between the theoretically calculated and the experimental values. Shielding of nitrogen, oxygen, sulfur, and selenium atoms is more sensitive to the nature of solvent and to the nature of tautomeric forms. The methods of NMR spectroscopy allow to identify reliably the dominating tautomeric form but they are insufficient for the quantitative characterization of tautomeric equilibria.     

溴代1-己基-3-甲基咪唑离子液体与丙酮的相互作用

1H and 13C NMR chemical shifts were determined to investigate the interactions of acetone with a room temperature ionic liquid 1-hexyl-3- methylimidazolium bromide C6mimBr at various mole fractions. Changes in chemical shifts of hydrogen nuclei and of carbon nuclei with the acetone concentration indicated the formation of hydrogen bond between anion of the ionic liquid and methyl protons of acetone. The NMR results were in good agreement with the ab initio computational results.     

A 13C n.m.r. study of the B6 vitamins and of their aldimine derivatives

The vitamins, pyridoxine, pyridoxal, pyridoxamine, pyridoxal-5′-phosphate and pyridoxamine-5′-phosphate, have been studied in aqueous solution over a pH range of 2–12 by ¹³C nuclear magnetic resonance spectroscopy. Resonance assignments are made primarily by the spin–spin coupling constants of carbons with protons and with phosphorus. The proton–carbon coupling constants show a marked conformational dependence in the hemiacetal form of pyridoxal. Furthermore, the H-6? C-5 coupling constant in the vitamins is much smaller than the corresponding constant in pyridine. This may be due either to an effect of the C-5 substituent in vitamins or to a different electronic configuration of the zwitterionic hydroxypyridine ring. The addition of manganese to a solution of pyridoxal phosphate causes line broadenings consistent with the interaction of the metal ion with this vitamin at the formyl and phenolic oxygens. The chemical shifts of the aromatic carbons of pyridoxine have been calculated, as a function of pH, by summing shielding parameters which were estimated empirically from pyridine derivatives. The calculated shifts agree well with the experimental data for C-3, C-5 and C-6, less well for C-2, and poorly for C-4. The deviation from additivity for C-4 indicates a preferred orientation for the 4-hydroxymethyl substituent caused by internal hydrogen bonding between the substituents at C-3 and C-4. Evidence is presented for the existence of the free aldehyde form of pyridoxal at alkaline pH. Aldimine complexes of pyridoxal and pyridoxal phosphate with amines and amino acids have also been studied. Characteristic chemical shift changes caused by both pyridinium and aldimine nitrogen deprotonations are seen. Additionally, the chemical shifts of carbons of the pyridine ring are dependent upon the structure of the imine, especially when the aldimine nitrogen is protonated. We conclude that this dependency is due to steric effects in an aldimine complex which is constrained by internal hydrogen bonding. We also discuss the merits of carbons 3 and 4 as possible sites of cofactor labeling for enzymatic studies.     

Phosphol-3-ene 1-oxides and -sulfides. A systematic investigation via carbon-13 nuclear magnetic resonance spectroscopy

¹³C NMR chemical shifts and ¹³C? ³¹P couplings are reported for 18 phosphol-3-ene 1-oxides and 18 corresponding sulfides. The effects of methyl substitution at positions 3 and 4 on the carbon shifts have been systematically explored and substituent parameters derived. One bond couplings from phosphorus to C-2 and C-5 have been related to the sum of the exocyclic substituent group electronegativities (covalent boundary potential values).     

Carbon-13 NMR spectra of monosubstituted pyrazines

Carbon-13 NMR chemical shifts and one-bond carbon–hydrogen coupling constants have been obtained at 15·09 MHz. The trends in the carbon chemical shifts obtained for the pyrazines parallel those of monosubstituted benzenes and 2-substituted pyridines, except for the direct effect of substitution where the pyrazines resemble pyridines not benzenes. The substituent effects on the ¹³C NMR spectra are generally quite similar to those in the ¹H NMR spectra. The ¹³C NMR spectrum of the tautomeric hydroxypyrazine has been compared with the ¹³C NMR spectra of 2-, 3- and 4-hydroxypyridines. Hydroxy compounds that can exist as a cyclic amide show a large meta substituent effect on the chemical carbon shift.     

13C NMR spectra of non-labelled and 15N-mono-labelled azo dyes

¹³C NMR spectra of four types of azo coupling products from benzenediazonium chloride have been measured and interpreted, viz. hydrazo compounds with an intramolecular hydrogen bond (3-methyl-1-phenylpyrazole-4,5-dione 4-phenylhydrazone), azo compounds without an intramolecular hydrogen bond (4-hydroxyazobenzene), azo compounds with an intramolecular hydrogen bond (2-hydroxy-5-tert-butylazobenzene) and an equilibrium mixture of both the tautomers of 1-phenylazo-2-naphthol. The absolute values of the J(¹⁵N¹³C) coupling constants have been determined by recording the spectra of the ¹⁵N isotopomers, and have been used, in some cases, for ¹³C signal assignment. A relationship has been found between the chemical shifts of the C-1′ to C-4′ carbons of the phenyl group (from the benzenediazonium ion) or the ¹J(¹⁵N¹³C) coupling constant, and the composition of the tautomeric mixture.     

A theoretical NMR study of polymorphism in crystal structures of azoles and benzazoles

The NMR chemical shifts of two azoles and one benzazole whose crystal structures present polymorphism have been computed using the GIPAW approach. ¹⁵N and ¹³C nuclei have been studied. Statistical analysis of the computed ¹³C and ¹⁵N chemical shifts indicates that the GIPAW chemical shifts reproduce with a high degree of accuracy those experimentally reported. This methodology can be used to identify other polymorphic crystal structures.     

1,1′,1′′-(2,4,6-Trihydroxybenzene-1,3,5-triyl)triethanone tautomerism revisited

It has recently been suggested that 1,1′,1′′-(2,4,6-trihydroxybenzene-1,3,5-triyl)triethanone may be tautomeric. Using ¹³C NMR chemical shifts and deuterium isotope effects on ¹³C chemical shifts, it is demonstrated that this is not the case. This compound occurs as a strongly hydrogen bonded benzene structure with hydrogen bonds between OH groups and the acetyl groups in both non-polar and hydrogen donating solvents. Quantum-chemical calculations using MP2 and M06-2X methods show substantial preference for the phenol structure in both the gas phase, and in cyclohexane and methanol. In addition, conventional UV–vis spectroscopy data suggest not tautomeric, but aggregation behaviour of the molecule in methanol and acetonitrile.     

Tautomerism of sterically hindered schiff bases. Deuterium isotope effects on 13C chemical shifts

A series of sterically hindered o-hydroxy Schiff bases derived from o-hydroxyaceto- and benzophenones with very short intramolecular hydrogen bonds were described qualitative and quantitatively by deuterium isotope effects on (13)C chemical shift, (n)DeltaC(XD), (n)DeltaF(XD), (1)J(N,H) coupling constants, deltaNCH(3) chemical shifts and UV spectra. All the investigated compounds are found to be tautomeric. The tautomeric character is described by the signs of the deuterium isotope effects on the (13)C chemical shifts. For the 3-nitro-5-chloro derivatives at low temperature, the equilibrium is shifted almost fully toward the proton transferred form in CD(2)Cl(2). Intrinsic deuterium isotope effects on chemical shifts of these compounds as well as (1)J(N,H) coupling constants suggest that a zwitterionic resonance form is dominant for the proton transferred form. Structures, (1)H, (19)F, and (13)C chemical shifts, and deuterium isotope effects on (13)C chemical shifts are calculated by ab initio methods. The potential energy functions and the total deuterium isotope effects are calculated, and they are shown to correspond well with the experimental findings.