Fourier transform infrared and Raman spectral investigations of 5-aminoindole

Fourier transform infrared (FT-IR) and Raman (FT-Raman) spectra of 5-aminoindole has been recorded and analysed. The FT-IR spectrum of the compound was recorded in a BrukerIFS 66 V spectrometer in the range 4000-400 cm(-1) and the FT-Raman spectrum was also recorded in the same instrument in the region 3500-100 cm(-1). Observed frequencies for normal modes are compared with those calculated form normal co-ordinate analysis. The shift in the frequencies of the fundamental modes with the substituent amino group and the mixing of different normal modes are discussed with the help of potential energy distribution (PED) calculated through normal co-ordinate analysis.     

Fourier transform infrared and Raman spectral analysis of trans-1,4-polyisoprene.

Polyisoprene is the most widely used polymer in industry and commerce. Fourier transform infrared (FTIR) and Raman spectra of trans-1,4-polyisoprene have been recorded in the range of 4000-400 and 4000-100 cm(-1), respectively. In the present investigation, detailed assignments of the observed fundamental bands of trans-1,4-polyisoprene has been analysed in terms of peak positions and relative intensities. With the hope of providing more and effective information on the fundamental vibrations, a normal co-ordinate analysis has been performed on trans-1,4polyisoprene, by assuming Cs symmetry. The simple general valance force field (SGVFF) method has been employed in normal co-ordinate analysis and to calculate the potential energy distribution (PED) for each fundamental vibration. The PED contribution corresponding to each of the observed frequencies shows the reliability and accuracy of the spectral analysis. The validity of the SGVFF method as a practical tool for complete analysis of vibrational spectra, even for a polymer of this complexity, is confirmed in the present work.     

Towards a practical Fourier transform infrared chemical imaging protocol for cancer histopathology

Fourier transform infrared (FTIR) chemical imaging is a strongly emerging technology that is being increasingly applied to examine tissues in a high-throughput manner. The resulting data quality and quantity have permitted several groups to provide evidence for applicability to cancer pathology. It is critical to understand, however, that an integrated approach with optimal data acquisition, classification, and validation is necessary to realize practical protocols that can be translated to the clinic. Here, we first review the development of technology relevant to clinical translation of FTIR imaging for cancer pathology. The role of each component in this approach is discussed separately by quantitative analysis of the effects of changing parameters on the classification results. We focus on the histology of prostate tissue to illustrate factors in developing a practical protocol for automated histopathology. Next, we demonstrate how these protocols can be used to analyze the effect of experimental parameters on prediction accuracy by analyzing the effects of varying spatial resolution, spectral resolution, and signal to noise ratio. Classification accuracy is shown to depend on the signal to noise ratio of recorded data, while depending only weakly on spectral resolution.     

Fourier transform infrared studies on the thermal degradation of polyacrylonitrile

Fourier transform infrared studies of the thermal degradation of polyacrylonitrile (PAN) conducted at 200°C in air and under reduced pressure are presented. The spectra are markedly superior to those published previously. A mechanism consistent with the infrared results obtained under reduced pressure is advanced, and assignments for the infrared bands occuring in the spectrum of both the reduced pressure and air degraded PAN are given.     

Fourier transform infrared studies in hypergolic ignition of ionic liquids

A class of room-temperature ionic liquids (RTILs) that exhibit hypergolic activity toward fuming nitric acid is reported. Fast ignition of dicyanamide ionic liquids when mixed with nitric acid is contrasted with the reactivity of the ionic liquid azides, which show high reactivity with nitric acid, but do not ignite. The reactivity of other potential salt fuels is assessed here. Rapid-scan, Fourier transform infrared (FTIR) spectroscopy of the preignition phase indicates the evolution of N 2O from both the dicyanamide and azide RTILs. Evidence for the evolution of CO 2 and isocyanic acid (HNCO) with similar temporal behavior to N 2O from reaction of the dicyanamide ionic liquids with nitric acid is presented. Evolution of HN 3 is detected from the azides. No evolution of HCN from the dicyanamide reactions was detected. From the FTIR observations, biuret reaction tests, and initial ab initio calculations, a mechanism is proposed for the formation of N 2O, CO 2, and HNCO from the dicyanamide reactions during preignition.     

Fourier transform infrared and Raman spectral assignments and analysis of 7-amino-4-trifluoromethylcoumarin

FTIR and FT-Raman spectra of 7-amino-4-trifluoromethylcoumarin (ATMC) have been recorded in the range 4000-400 and 3500-100 cm(-1), respectively, using Bruker IFS 66 V spectrometer. A detailed vibrational analysis has been carried out and assignments of the observed fundamental bands have been proposed on the basis of peak positions, relative intensities, fundamentals, overtones and combination bands. With hope of providing more and effective information on the fundamental vibrations, a normal co-ordinate analysis has been performed by assuming C(S) point group symmetry. The simple valance force field (SVFF) has been employed in normal co-ordinate analysis and to calculate the potential energy distribution (PED) for each fundamental vibration are reported. The PED contribution to each of the observed frequencies shows the reliability and precision of the spectral analysis.     

Combined Fourier transform infrared and Raman spectroscopic studies of some carbonyl-diphosphine-indenyl-iron cations

The Fourier transform infrared and Raman spectra of the cations [η⁵-C₉H₇Fe(CO)_n dppa]⁺ (n = 1, 2; dppa=bisdiphenylphosphinoalkane, where alkane=methane, ethane, butane, hexane and octane) and [{η⁵-C₉H₇Fe(CO)₂}₂-μ-dppa]²⁺ indicate that the alkyl chain lengths have effects on the structures of the bidentate cations resulting in increased back-donation to carbonyl groups as the chain length increases. In contrast the alkyl chain lengths have no similar effects in the unidentate mononuclear and bridged cations.     

Negative chemical ionization and accurate mass measurement applications for a linked gas chromatography/Fourier transform infrared spectrometer/Fourier transform mass spectrometer

Summary The analytical utility of a linked GC/FTIR/ FTMS system operating in accurate mass and negative CI modes is demonstrated. In addition to the complementary information derived from IR and MS search results, accurate mass measurement data (average error of 4.2 ppm) is employed in the analysis of a seven component mixture. A post search filter uses accurate mass data to eliminate spectral search results with incorrect elemental compositions. An alternate positive ion EI and negative ion CI GC/IR/MS analysis is also performed on a mixture of substituted phenyl aldehydes and ketones. The reagent gas, ammonia, is introduced by pulsed valve thus minimizing crossover spectral contamination while maximizing spectral resolution. Proton abstraction by the amide produces an intense (M-1)^– for all compounds in the mixture. Molecular weight information from the negative CI data is used in a post search filter to improve the reliability of both IR and MS search results.

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Anwendung der negativen chemischen Ionisation und genauer Massenmessungen für ein gekoppeltes GC/FTIR/FTMS-System

Zusammenfassung Die analytische Anwendbarkeit eines gekoppelten GC/FTIR/FTMS-Systems mit akkurater Massenmessung und NCI-Betrieb wird dargestellt. Zusätzlich zu den komplementären Informationen aus IR- und MS- Bibliothekssuchen werden Daten aus akkuraten Massenmessungen (mittlerer Fehler 4.2 ppm) bei der Analyse einer Mischung aus sieben Komponenten mit herangezogen. Im Anschluß an die Bibliothekssuche eliminiert ein Filter mit Hilfe der akkuraten Massen Ergebnisse mit fehlerhafter Elementarzusammensetzung. Von einer Mischung aus substituierten Phenylaldehyden und -ketonen wird eine Analyse mit alternierender Registrierung von positiven EI- und negativen CI-Spektren durch ein GC/IR/-MS-System ausgeführt. Das Reaktandgas Ammoniak wird über ein gepulstes Ventil zugegeben, um bei maximaler spektraler Auflösung minimale Störung durch Verunreinigung zu erhalten. Durch Abstraktion eines Protons von der Amidfunktion werden von allen Komponenten der Mischung intensive (M-1)-Ionen gebildet. Molekulargewichtsinformationen aus dem NCI-Experiment werden als Filter verwendet, mit dem die Zuverlässigkeit des Suchens in IR- und MS-Datenbanken erhöht werden kann.

     

High-pass filters for spectral background suppression in airborne passive Fourier transform infrared spectrometry

High-pass (HP) digital filtering and second-derivative (SD) filtering are evaluated as methods of removing background contributions from spectra collected by passive Fourier transform infrared spectrometry. In measurements performed with a downward-looking spectrometer mounted on an aircraft platform, the effects of non-constant background radiance from the ground make it challenging to build automated classifiers for detecting an analyte of interest. Applying HP digital filtering to the spectra to remove background contributions is evaluated as a strategy to help improve classifier performance. This methodology is tested by building classifiers for detecting heated ethanol plumes released from a portable emission stack. The classifiers are trained with data collected on the ground with the spectrometer viewing the plumes against a synthetic backdrop designed to simulate a terrestrial radiance source. The resulting classifiers are tested with data collected by the same spectrometer mounted on an aircraft flying over the emission stack. Support vector machines are employed as a classification algorithm with HP filtered spectra used as input patterns. Butterworth filters are used to implement HP digital filtering, while Savitzky-Golay filters are used to implement SD filtering. Significant improvement in classification performance is achieved by use of the HP filters. Because of variation in backgrounds between the training and prediction data, the best classifier obtained with unfiltered spectra is unable to detect ethanol in 37% of the test cases. HP filtering of spectra with an optimized Butterworth filter (order 8, cutoff frequency 0.060) improves the prediction results, resulting in no missed ethanol detections and false positive rates of less than 0.4%.     

Fourier transform raman spectroscopy using a bench-top fourier transform infrared spectrometer

The use of a bench top FTIR spectrometer for near infrared Fourier transform Raman spectroscopy is demonstrated. The use of near infrared excitation results in fluorescence free Raman spectra allowing previously difficult samples to be measured.     

Fourier transform infrared studies of alternate acid-amine Langmuir-Blodgett films with pyroelectric properties

FTIR-RAIRS and ATR techniques are shown to provide a powerful means of investigating the molecular behaviour responsible for the pyroelectric properties of organic monolayer assemblies on silicon and aluminised glass. Spectral changes, associated with either proton transfer or head group rearrangement, are well correlated with the level of pyroelectric response for two different devices. The technique promises to be extremely important for the elucidation of the microscopic properties of molecular electronic devices.     

Fourier transform infrared studies of ionic interactions in perfluorinated acid copolymer blends

Ionic interactions have been shown to enhance polymer–polymer miscibility in several highly dissimilar blend systems. In some cases, the miscibility is due to proton transfer from an acidic site on one polymer to a basic site on another, which leads to ion–ion interactions. Studies that have focused on the formation of ionomer blends from highly dissimilar materials, such as fluorocarbons and hydrocarbons or aromatics and aliphatics of widely differing glass transitions, have shown that in the absence of ionic interactions, these materials are immiscible. In this study, we have used Fourier transform infrared (FTIR) spectroscopy techniques, both qualitatively and semiquantitatively, to evaluate the extent of the proton‐transfer mechanism in the enhancement of miscibility in perfluorinated acid copolymer/poly(ethyl acrylate) blends. The perfluorinated acid copolymer contains sulfonic acid groups, whereas the poly(ethyl acrylate) has been modified by the introduction of various amounts of 4‐vinyl pyridine groups as comonomers in the polymer chains. The proton‐transfer mechanism in this case consists of the transfer of the proton on the sulfonic acid group to the nitrogen on the pyridine group, forming a pyridinium cation and a sulfonate anion pair. FTIR has been used to distinguish between the pyridine and pyridinium groups through their absorption bands at 1416 and 1642 cm^?1, respectively. The relative intensities of these bands, as a function of the molar concentration of the pyridine comonomers in the blend, provides a direct quantitative indication of the extent of proton transfer occurring in the system. © 2003 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 41: 1814–1823, 2003     

Fourier transform infrared imaging analysis in discrimination studies of squamous cell carcinoma

Oral squamous cell carcinoma (OSCC) of the oral cavity and oropharynx represents more than 95% of all malignant neoplasms in the oral cavity. Histomorphological evaluation of this cancer type is invasive and remains a time consuming and subjective technique. Therefore, novel approaches for histological recognition are necessary to identify malignancy at an early stage. Fourier transform infrared (FTIR) imaging has become an essential tool for the detection and characterization of the molecular components of biological processes, such as those responsible for the dynamic properties of tumor progression. FTIR imaging is a modern analytical technique enabling molecular imaging of a complex biological sample and is based on the absorption of IR radiation by vibrational transitions in covalent bonds. One major advantage of this technique is the acquisition of local molecular expression profiles, while maintaining the topographic integrity of the tissue and avoiding time-consuming extraction, purification, and separation steps. With this imaging technique, it is possible to obtain unique images of the spatial distribution of proteins, lipids, carbohydrates, cholesterols, nucleic acids, phospholipids, and small molecules with high spatial resolution. Analysis and visualization of FTIR imaging datasets are challenging and the use of chemometric tools is crucial in order to take advantage of the full measurement. Therefore, methodologies for this task based on the novel developed algorithm for multivariate image analysis (MIA) are often necessary. In the present study, FTIR imaging and data analysis methods were combined to optimize the tissue measurement mode after deparaffinization and subsequent data evaluation (univariate analysis and MIAs). We demonstrate that it is possible to collect excellent IR spectra from formalin-fixed paraffin-embedded (FFPE) tissue microarrays (TMAs) of OSCC tissue sections employing an optimised analytical protocol. The correlation of FTIR imaging to the morphological tissue features obtained by histological staining of the sections demonstrated that many histomorphological tissue patterns can be visualized in the colour images. The different algorithms used for MIAs of FTIR imaging data dramatically increased the information content of the IR images from squamous cell tissue sections. These findings indicate that intra-operative and surgical specimens of squamous cell carcinoma tissue can be characterized by FTIR imaging.     

Quantum chemical computations of 1,3-phenylenediacetic acid

Molecular geometry, vibrational wavenumbers and gauge including atomic orbital (GIAO) 13C NMR and 1H NMR chemical shift values of 1,3-phenylenediacetic acid (C10H10O4), in the ground state have been calculated by using ab initio Hartree-Fock (HF) and density functional theory (DFT/B3LYP) methods with 6-311++G(d,p) basis set for the first time. Comparison of the observed fundamental vibrational modes of 1,3-phenylenediacetic acid and calculated results by density functional B3LYP and Hartree-Fock methods indicate that B3LYP is superior to the scaled Hartree-Fock approach for quantum chemical studies. Geometric parameters (bond lengths and bond angles) and vibrational wavenumbers obtained by the HF and DFT/B3LYP methods are in good agreement with the experimental data. Furthermore, this is the first time the results of the calculated JCH and JCC coupling constants of the C10H10O4 molecule are presented in this study.     

Fourier transform infrared analysis of paint solvents

The composition of solvent mixtures employed in the paint industry was determined by Fourier transform infrared spectrometry. A procedure based on the use of the ratio between the absorbance of characteristic bands of each component permits the ratio between two solvents in a binary mixture to be determined, independently of the thickness of the sample film. Typical mixtures of xylol with butan-1-ol and with butyl acetate (xylol=mixture of o-, m- and p-xylenes) were used as model systems to develop the proposed procedure and the accuracy was determined using synthetic formulations. Another possible application of the procedure is the characterization of azeotropic mixtures.     

Fourier transform infrared spectrometric determination of Ziram

A procedure has been developed for vapour-phase Fourier transform infrared determination of Ziram, a dithiocarbamate pesticide. The method is based on the evolution of CS₂, after decomposition of the dithiocarbamate with diluted H₂SO₄ at 50°C. The CS₂ evolved was swept by a carrier flow of nitrogen to a laboratory-made infrared gas cell of 39 mm pathlength and 490 μl volume. The signals were registered as a function of time. The area of peaks obtained from absorbance measurement in the wavenumber range between 1600 and 1450 cm⁻¹ were interpolated in a calibration line established from Ziram standards treated in the same way as samples. The method provided an absolute limit of detection of 0.055 mg, a variation coefficient of the order of 6% for an analyte mass of 50 mg, and an analysis time of 3.5 min.     

Proton hydration in aqueous solution: Fourier transform infrared studies of HDO spectra

This paper attempts to elucidate the number and nature of the hydration spheres around the proton in an aqueous solution. This phenomenon was studied in aqueous solutions of selected acids by means of Fourier transform infrared spectroscopy of semiheavy water (HDO), isotopically diluted in H(2)O. The quantitative version of difference spectrum procedure was applied for the first time to investigate such systems. It allowed removal of bulk water contribution and separation of the spectra of solute-affected HDO. The obtained spectral data were confronted with ab initio calculated structures of small gas-phase and polarizable continuum model (PCM) solvated aqueous clusters, H+(H2O)n, n=2-8, in order to help in establishing the structural and energetic states of the consecutive hydration spheres of the hydrated proton. This was achieved by comparison of the calculated optimal geometries with the interatomic distances derived from HDO band positions. The structure of proton hydration shells outside the first hydration sphere essentially follows the model structure of other hydrated cations, previously revealed by affected HDO spectra. The first hydration sphere complex in diluted aqueous solutions was identified as an asymmetric variant of the regular Zundel cation [The Hydrogen Bond: Recent Developments in Theory and Experiments, edited by P. Schuster, G. Zundel, and C. Sandorfy (North-Holland, Amsterdam, 1976), Vol. II, p. 683], intermediate between the ideal Zundel and Eigen structures [E. Wicke et al., Z. Phys. Chem. Neue Folge 1, 340 (1954)]. Evidence was found for the existence of strong and short hydrogen bonds, with oxygen-oxygen distance derived from the experimental affected spectra equal 2.435 A on average and in the PCM calculations about 2.41-2.44 A. It was also evidenced for the first time that the proton possesses four well-defined hydration spheres, which were characterized in terms of hydrogen bonds' lengths and arrangements. Additionally, an outer hydration layer, shared with the anion, as well as loosely bound water molecules interacting with free electron pairs of the central complex were detected in the affected spectra.     

Fourier transform infrared studies of inhibited autoxidation in cis-1,4-polybutadiene

The inhibited autoxidation of cis-1,4-polybutadiene (BR) was examined by Fourier transform infrared spectroscopy (FTIR) in the presence of three chain-breaking antioxidants: 2,6-di-tert-butyl-4-methylphenol (CA-1); 4,4′-methylene-bis-(2,6-di-tert-butylphenol) (CA-2) and N-phenyl-2-naphthylamine (CA-3). Weak interaction is detected between the phenolic OH and arylamine NH groups and the rubber unsaturation. These antioxidants terminate two or more kinetic chains per molecule and their mechanisms are described.     

Quantum chemical and x-ray spectral studies of the structures of superstoichiometric fluorocarbons

The possibility of hole formation in the structures of superstoichiometric fluorocarbons is studied. Different geometries are modeled by removing one, two, or six CF groups from the stoichiometric fluorocarbon lattice. The positions of fluorine atoms in the internal CF₂ groups are optimized using the semiempirical MNDO method. The quantum chemical calculations of fluorocarbon clusters containing holes of different geometries suggest the preferential formation of six-center hole structures in fluorocarbon lattices. The X-ray emission CK_α-spectra of the superstoichiometric CF_x (x=1.20 and 1.33) samples are obtained. Based on the cluster calculations, theoretical CK_α-spectra of CF_x are constructed. A comparison of the theoretical and experimental results shows that the spectra of the superstoichiometric fluorocarbons are characterized by a short-wave maximum, whose intensity increases with x. Deceased Institute of Inorganic Chemistry, Siberian Branch, Russian Academy of Sciences. Translated fromZhurnal Strukturnoi Khimii, Vol. 37, No. 6, pp. 1072–1080, November–December, 1996. Translated by I. Izvekova     

Fourier transform infrared emission spectra of MgH and MgD

High resolution Fourier transform infrared emission spectra of MgH and MgD have been recorded. The molecules were generated in an emission source that combines an electrical discharge with a high temperature furnace. Several vibration-rotation bands were observed for all six isotopomers in the X (2)Sigma(+) ground electronic state: v=1-->0 to 4-->3 for (24)MgH, v=1-->0 to 3-->2 for (25)MgH and (26)MgH, v=1-->0 to 5-->4 for (24)MgD, v=1-->0 to 4-->3 for (25)MgD and (26)MgD. The new data were combined with the previous ground state data, obtained from diode laser vibration-rotation measurements and pure rotation spectra, and spectroscopic constants were determined for the v=0 to 4 levels of (24)MgH and the v=0 to 5 levels of (24)MgD. In addition, Dunham constants and Born-Oppenheimer breakdown correction parameters were obtained in a combined fit of the six isotopomers. The equilibrium vibrational constants (omega(e)) for (24)MgH and (24)MgD were found to be 1492.776(7) cm(-1) and 1077.298(5) cm(-1), respectively, while the equilibrium rotational constants (B(e)) are 5.825 523(8) cm(-1) and 3.034 344(4) cm(-1). The associated equilibrium bond distances (r(e)) were determined to be 1.729 721(1) A for (24)MgH and 1.729 157(1) A for (24)MgD.