Quantum computational,spectroscopic and molecular docking studies on 6-amino-3-bromo-2-methylpyridine

In order to confirm the vibrational assignments, the density functional hypothesis has been used for 6-amino-3-bromo-2-methylpyridine (6A3B2MP). The entire energy distribution is used to materialize the several vibrational modes of 6A3B2MP (TED). The DFT/B3LYP approach is used to examine the molecular optimum limits and electronic characteristics of 6A3B2MP. Investigations have been made into the molecular orbital, Fukui function analysis, natural bond orbital (NBO), and molecular electrostatic potential (MEP) characteristics of 6A3B2MP. Theoretical studies have focused on the UV–vis spectra with different solvents. According to the outcomes of the molecular docking technique, the 6A3B2MP is docked with two target proteins, which is crucial for the emergence of cancer. Therefore, this research paves the door for the development of medicines that are specially formulated.     

Synthesis,spectral analysis,antibacterial activity,quantum chemical studies and supporting molecular docking of Schiff base (E)-4-((4-bromobenzylidene) amino)benzenesulfonamide

A new Schiff base (E)-4-((4-bromobenzylidene) amino) benzenesulfonamide (M2) was synthesized by the reaction between 4-bromobenzaldehyde and sulfanilamide followed by characterization using IR, Raman, UV–Visible, ¹HNMR, and ¹³CNMR spectral techniques. This was followed by electronic structure studies using DFT and TD-DFT. We simulated the IR spectrum using B3LYP/6-31+G(d,p) level of theory, followed by a comparison with experimental spectra and detailed potential energy distribution and vibrational assignment analysis. The comparison of experimental UV and simulated UV spectrum using TD-DFT B3LYP/6-31+G(d,p) in DMSO solvent atmosphere gave good agreement. As Schiff bases are biologically active, we checked for the potential activity of the synthesized compound with the help of ADMET prediction and found it to be active. Wavefunctions related properties like ELF, LOL, and ELF are also reported. Prediction of biological activity spectrum study indicated possible antibacterial activity against bacteria, which is supported by molecular docking against Staphylococcus aureus (3U2D) protein with a docking score of ?7.1 kcal/mol. Experimental antibacterial study using the compound and standard drugs confirmed this prediction.     

Amyloid β fibrils disruption by kolaviron: Molecular docking and extended molecular dynamics simulation studies

Garcinia kola (GK) produces notable effects against neurodegenerative conditions, including experimentally-induced Alzheimer’s disease (AD). These remarkable effects are basically attributable to kolaviron (KV), a bioflavonoid constituent of this seed. Specifically, it has been reported that in AD models, KV produces interesting neuroprotective effects, being able to diminish associated neurotoxicity, via modulation of antioxidative, inflammatory and other disease modifying processes. Intriguingly, the effect of KV on amyloid-beta (Aβ) aggregation and disruption of preformed Aβ fibrils have not been studied. In this study, we have described a thorough computational study on the mechanism of action of KV as an Aβ fibrils disruptor at molecular level. We used comprehensive in silico docking evaluations and extended molecular dynamics simulation to mimic KV/Aβ fibrils system. Results indicate that KV was able to move within the Aβ fibrils, binding with important residues and components in the Aβ peptide identified to be vital for stabilizing preformed fibrils. KV destabilized the assembled Aβ fibrils, indicating the ability KV as a potential anti-amyloidogenic agent. Furthermore, this work highlighted the possibility of identifying new multifunctional phytocompounds as potent AD drugs.     

First identification of isatin-β-thiosemicarbazones as novel inhibitors of New Delhi metallo-β-lactamase-1: Chemical synthesis,biological evaluation and molecular simulation

A series of isatin-β-thiosemicarbazone compounds were identified as novel inhibitors of New Delhi metallo-β-lactamase-1. The structure-activity relationship and possible binding mode were also established for further rational design of new inhibitors.     

Design,synthesis, in vitro and in silico studies of naproxen derivatives as dual lipoxygenase and α-glucosidase inhibitors

A series of 28 novel naproxen derivatives (4a-f, 5a-f, 6a-d, 7a-f, and 8a-f) have been designed, synthesized, and characterized. The synthesized derivatives were assessed as dual inhibitors for 15-lipoxygenase (LOX) and α-glucosidase enzymes and checked for cytotoxicity and ADME studies. The inhibitory potential of naproxen derivatives for 15- LOX was checked through two different methods, the UV absorbance method and the Chemiluminescence method. The biological activities result revealed that through the UV absorbance method, compound 4f (IC₅₀ 21.31 ± 0.32 µM) was found potent among the series followed by compounds 4e (IC₅₀ 36.53 ± 0.51 µM) and 4d (IC₅₀ 49.62 ± 0.12 µM) against standard drug baicalein (IC₅₀ 22.46 ± 1.32 µM) and quercetin (IC₅₀ 2.34 ± 0.35 µM), while through chemiluminescence method tested compounds showed significant 15-LOX inhibition at the range of IC₅₀ 1.13 ± 0.62 µM ?123.47 ± 0.37 µM. Among these compounds, 4e (IC₅₀ 1.13 ± 0.62 µM), 5b (IC₅₀ 1.19 ± 0.43 µM), 8c (IC₅₀ 1.23 ± 0.35 µM) were found most potent inhibitors against quercetin (IC₅₀ 4.86 ± 0.14 µM), and baicalein (IC₅₀ 2.24 ± 0.13 µM). The chemiluminescence method was found more sensitive than the UV method to identify 15-LOX inhibitors. Interestingly all synthesized compounds showed significant α-glucosidase inhibitory activity (IC₅₀ 1.0 ± 1.13 µM ? 367.2 ± 1.23 µM) even better than the standard drug acarbose (IC₅₀ 375.82 ± 1.76 µM), while compound 6c (IC₅₀ 1.0 ± 1.13 µM) and 7c (IC₅₀ 1.1 ± 1.17 µM) were found most potent compounds among the series even many folds better than the standard drug. The cell viability results showed that all compounds were less toxic, maintained cellular viability at the range of 99.8 ± 1.3% to 63.7 ± 1.5%. ADME and molecular docking studies supported drug-likeness and binding interactions of compounds with the targeted enzymes.     

Second-order atomic Fukui indices from the electron-pair density in the framework of the atoms in molecules theory

Atomic Fukui indices, which are obtained from the electron density, have been previously shown to be useful in predicting which atoms in a molecule are most likely to suffer nucleophilic, electrophilic, or radicalary attacks. Here, we present a second-order generalization of these indices based on the electron pair density. We show how second-order atomic Fukui indices can be used to analyze the effects of electron loss or gain in several molecules from an electron pair point of view. Further, these indices also highlight which atoms or pairs of atoms are more likely to suffer nucleophilic, electrophilic, or radical attacks. In conclusion, second-order indices can complement first-order ones by affording relevant information on molecular reactivity from an electron pair perspective.     

4-羟基香豆素及其衍生物的简便合成及其荧光性质的研究

用米氏酸和苯酚在无溶剂条件下以90.6%的收率合成丙二酸单苯基酯, 然后用Eaton试剂(五氧化二磷＋甲基磺酸)在温和条件下闭环, 以78.8%的收率得到4-羟基香豆素, 将这种方法扩展合成了苯环上带有各种取代基的4-羟基香豆素衍生物以及4-羟基硫代香豆素衍生物. 并对部分4-羟基香豆素衍生物的荧光性质进行了研究.     

Molecular Docking of 3-Methylindole-containing Drugs Binding into CYP3A4

Drugs SPD-304(6,7-dimethyl-3-{[methyl-(2-{methyl-[1-(3-trifluoromethyl-phenyl)-1H-indol-3-ylmethyl]- amino}-ethyl)-amino]-methyl}-chromen-4-one) and zafirlukast contain a common structural element of 3-substituted indole moiety which closely relates to a dehydrogenated reaction catalyzed by cytochrome P450s(CYPs). It was reported that the dehydrogenation can produce a reactive electrophilic intermediate which cause toxicities and inactivate CYPs. Drug L-745,870(3-{[4-(4-chlorophenyl)piperazin-1-yl]-methyl}-1H-pyrrolo- 2,3-β-pyridine) might have similar effect since it contains the same structural element. We used molecular docking approach combined with molecular dynamics(MD) simulation to model three-dimensional(3D) complex structures of SPD-304, zafirlukast and L-745,870 into CYP3A4, respectively. The results show that these three drugs can stably bind into the active site and the 3-methylene carbons of the drugs keep a reasonable reactive distance from the heme iron. The complex structure of SPD-304-CYP3A4 is in agreement with experimental data. For zafirlukast, the calculation results indicate that 3-methylene carbon might be the dehydrogenation reaction site. Docking model of L-745,870-CYP3A4 shows a potential possibility of L-745,870 dehydrogenated by CYP3A4 at 3-methylene carbon which is in agreement with experiment in vivo. In addition, residues in the phenylalanine cluster as well as S119 and R212 play a critical role in the ligands binding based on our calculations. The docking models could provide some clues to understand the metabolic mechanism of the drugs by CYP3A4.     

Charge Effects in PCP Pincer Complexes of NiII bearing Phosphinite and Imidazol(i)ophosphine Coordinating Jaws: From Synthesis to Catalysis through Bonding Analysis

This contribution reports on a new family of Ni^II pincer complexes featuring phosphinite and functional imidazolyl arms. The proligands ^RPIMC^HOP^R′ react at room temperature with Ni^II precursors to give the corresponding complexes [(^RPIMCOP^R′)NiBr], where ^RPIMCOP^R=κ^P,κ^C,κ^P‐{2‐(R′₂PO),6‐(R₂PC₃H₂N₂)C₆H₃}, R=iPr, R′=iPr ( 3 b , 84 %) or Ph ( 3 c , 45 %). Selective N‐methylation of the imidazole imine moiety in 3 b by MeOTf (OTf=OSO₂CF₃) gave the corresponding imidazoliophosphine [(^iPrPIMIOCOP^iPr)NiBr][OTf], 4 b , in 89 % yield (^iPrPIMIOCOP^iPr=κ^P,κ^C,κ^P‐{2‐(iPr₂PO),6‐(iPr₂PC₄H₅N₂)C₆H₃}). Treating 4 b with NaOEt led to the NHC derivative [(NHCCOP^iPr)NiBr], 5 b , in 47 % yield (NHCCOP^iPr=κ^P,κ^C,κ^C‐{2‐(iPr₂PO),6‐(C₄H₅N₂)C₆H₃)}). The bromo derivatives 3–5 were then treated with AgOTf in acetonitrile to give the corresponding cationic species [(^RPIMCOP^R)Ni(MeCN)][OTf] [R=Ph, 6 a (89 %) or iPr, 6 b (90 %)], [(^RPIMIOCOP^R)Ni(MeCN)][OTf]₂ [R=Ph, 7 a (79 %) or iPr, 7 b (88 %)], and [(NHCCOP^R)Ni(MeCN)][OTf] [R=Ph, 8 a (85 %) or iPr, 8 b (84 %)]. All new complexes have been characterized by NMR and IR spectroscopy, whereas 3 b , 3 c , 5 b , 6 b , and 8 a were also subjected to X‐ray diffraction studies. The acetonitrile adducts 6 – 8 were further studied by using various theoretical analysis tools. In the presence of excess nitrile and amine, the cationic acetonitrile adducts 6 – 8 catalyze hydroamination of nitriles to give unsymmetrical amidines with catalytic turnover numbers of up to 95.     

对羟基杏仁酸合成酶三维结构模建及其与底物的分子对接研究

以对羟基苯丙酮酸双氧化酶(HPPD)的晶体结构为模板, 利用同源模建方法构建了与其高度同源、底物相同但催化功能存在明显差别的对羟基杏仁酸合成酶(HMS)的三维结构, 并对模建结构的合理性进行了分析. 在模建结果的基础上, 对HPPD和HMS分别与底物羟苯基丙酮酸(HPP)进行分子对接计算, 比较了二者结合模式的异同, 为两种同源酶在催化方面差异性的合理阐释提供了一些有益的信息.