Structural Changes of a Doubly Spin‐Labeled Chemically Driven Molecular Shuttle Probed by PELDOR Spectroscopy

Gaining detailed information on the structural rearrangements associated with stimuli‐induced molecular movements is of utmost importance for understanding the operation of molecular machines. Pulsed electron–electron double resonance (PELDOR) was employed to monitor the geometrical changes arising upon chemical switching of a [2]rotaxane that behaves as an acid–base‐controlled molecular shuttle. To this aim, the rotaxane was endowed with stable nitroxide radical units in both the ring and axle components. The combination of PELDOR data and molecular dynamic calculations indicates that in the investigated rotaxane, the ring displacement along the axle, caused by the addition of a base, does not alter significantly the distance between the nitroxide labels, but it is accompanied by a profound change in the geometry adopted by the macrocycle.     

Precision Molecular Threading/Dethreading

The general principles guiding the design of molecular machines based on interlocked structures are well known. Nonetheless, the identification of suitable molecular components for a precise tuning of the energetic parameters that determine the mechanical link is still challenging. Indeed, what are the reasons of the “all‐or‐nothing” effect, which turns a molecular “speed‐bump” into a stopper in pseudorotaxane‐based architectures? Here we investigate the threading and dethreading processes for a representative class of molecular components, based on symmetric dibenzylammonium axles and dibenzo[24]crown‐8 ether, with a joint experimental–computational strategy. From the analysis of quantitative data and an atomistic insight, we derive simple rules correlating the kinetic behaviour with the substitution pattern, and provide rational guidelines for the design of modules to be integrated in molecular switches and motors with sophisticated dynamic features.     

Fluorescent Alteration on a Bistable Molecular Shuttle

Solvent driven molecular shuttles containing a pyrene‐connected macrocycle and an intramolecular charge‐transfer (ICT) chromophore stopper are constructed. In one of the molecular shuttles, a long C‐10 chain is introduced in the thread to separate the peptide station and the ICT stopper. The macrocycle stays in the peptide station in apolar solvents and moves to the C10‐chain station in highly polar solvents. This moving process alters the electronic interaction between the pyrene unit in the macrocycle and the ICT stopper, which induces the change of the pyrene fluorescence emission. The molecular shuttle exhibits stronger emission when the macrocycle is adjacent to the ICT stopper.     

The Shuttling Cascade in Lasso Peptide Benenodin-1 is Controlled by Non-Covalent Interactions

The lasso peptide benenodin-1, a naturally occurring and bacterially produced [1]rotaxane, undergoes a reversible zip tie-like motion under heat activation, in which a peptidic wheel stepwise translates along a molecular thread in a cascade of “tail/loop pulling” equilibria. Conformational and structural analyses of four translational isomers, in solution and in the gas phase, reveal that the equilibrium distribution is controlled by mechanical and non-covalent forces within the lasso peptide. Furthermore, each dynamic pulling step is accompanied by a major restructuring of the intramolecular hydrogen bonding network between wheel and thread, which affects the peptide's physico-chemical properties.     

Reversible Photoswitching of Rotaxane Character and Interplay of Thermodynamic Stability and Kinetic Lability in a Self‐Assembling Ring–Axle Molecular System

We have designed, synthesized, and investigated a self‐assembling system that can be reversibly interconverted between thermodynamically stable (pseudorotaxane) and kinetically inert (rotaxane) forms by light irradiation. The system is composed of a dibenzo[24]crown‐8 ring and an axle comprised of a dibenzylammonium recognition site and two azobenzene end groups. The isomeric form of the azobenzene units of the axle has a little influence on the stability constants of the respective pseudorotaxanes but greatly affects the threading–dethreading rate constants. In fact, equilibration of the ring and the axle in its EE isomeric form occurs within seconds in acetonitrile at room temperature, whereas the ZZ axle threads–dethreads the ring at least four orders of magnitude slower. Moreover, we show that a change in the stability of the complex, achieved by deprotonating the dibenzylammonium recognition site on the axle, affects its kinetic behavior. We compare the results of these experiments with those observed upon dethreading the (pseudo)rotaxane by using a competitive guest for the ring, an approach which does not inherently destabilize the ring–axle interaction. This study outlines a general strategy for the reversible photochemical control of motion kinetics in threaded and interlocked compounds and constitutes a starting point for the construction of multicomponent structures that can behave as photochemically driven nanomachines.     

Bistable or Oscillating State Depending on Station and Temperature in Three‐Station Glycorotaxane Molecular Machines

High‐yield, straightforward synthesis of two‐ and three‐station [2]rotaxane molecular machines based on an anilinium, a triazolium, and a mono‐ or disubstituted pyridinium amide station is reported. In the case of the pH‐sensitive two‐station molecular machines, large‐amplitude movement of the macrocycle occurred. However, the presence of an intermediate third station led, after deprotonation of the anilinium station, and depending on the substitution of the pyridinium amide, either to exclusive localization of the macrocycle around the triazolium station or to oscillatory shuttling of the macrocycle between the triazolium and monosubstituted pyridinium amide station. Variable‐temperature ¹H NMR investigation of the oscillating system was performed in CD₂Cl₂. The exchange between the two stations proved to be fast on the NMR timescale for all considered temperatures (298–193 K). Interestingly, decreasing the temperature displaced the equilibrium between the two translational isomers until a unique location of the macrocycle around the monosubstituted pyridinium amide station was reached. Thermodynamic constants K were evaluated at each temperature: the thermodynamic parameters ΔH and ΔS were extracted from a Van′t Hoff plot, and provided the Gibbs energy ΔG. Arrhenius and Eyring plots afforded kinetic parameters, namely, energies of activation E_a, enthalpies of activation ΔH^≠, and entropies of activation ΔS^≠. The ΔG values deduced from kinetic parameters match very well with the ΔG values determined from thermodynamic parameters. In addition, whereas signal coalescence of pyridinium hydrogen atoms located next to the amide bond was observed at 205 K in the oscillating rotaxane and at 203 K in the two‐station rotaxane with a unique location of the macrocycle around the pyridinium amide, no separation of ¹H NMR signals of the considered hydrogen atoms was seen in the corresponding nonencapsulated thread. It is suggested that the macrocycle acts as a molecular brake for the rotation of the pyridinium–amide bond when it interacts by hydrogen bonding with both the amide NH and the pyridinium hydrogen atoms at the same time.     

A Molecular Shuttle Driven by Fullerene Radical‐Anion Recognition

We describe a electrochemically driven molecular shuttle, in which shuttling takes place by means of fullerene radical‐anion recognition that results in a very low operation potential (E_1/2=?0.580 V vs. decamethylferrocene). This has been achieved by introducing positive charges on the macrocycle, which strengthen the existing π–π interactions between the macrocycle and the electrogenerated fullerene radical anion by means of an electrostatic component. In addition, the synthesis of such a molecular shuttle has been accomplished by developing a new synthetic approach that exploits the controlled translocation of the macrocycle as a selective protecting group.     

Molecular Tweezers: Concepts and Applications

Taken to the molecular level, the concept of “tweezers” opens a rich and fascinating field at the convergence of molecular recognition, biomimetic chemistry and nanomachines. Composed of a spacer bridging two interaction sites, the behaviour of molecular tweezers is strongly influenced by the flexibility of their spacer. Operating through an “induced‐fit” recognition mechanism, flexible molecular tweezers select the conformation(s) most appropriate for substrate binding. Their adaptability allows them to be used in a variety of binding modes and they have found applications in chirality signalling. Rigid spacers, on the contrary, display a limited number of binding states, which lead to selective and strong substrate binding following a “lock and key” model. Exquisite selectivity may be expressed with substrates as varied as C₆₀, nanotubes and natural cofactors, and applications to molecular electronics and enzyme inhibition are emerging. At the crossroad between flexible and rigid spacers, stimulus‐responsive molecular tweezers controlled by ionic, redox or light triggers belong to the realm of molecular machines, and, applied to molecular tweezing, open doors to the selective binding, transport and release of their cargo. Applications to controlled drug delivery are already appearing. The past 30 years have seen the birth of molecular tweezers; the next many years to come will surely see them blooming in exciting applications.     

Co‐Conformational Distribution of Nanosized [2]Catenanes Determined by Pulse EPR Measurements

The co‐conformational ensembles of three differently sized [2]catenanes were studied by measuring pair correlation functions corresponding to the separation of nitroxide spin labels—one attached to each of the two macrocycles—with the double electron–electron resonance (DEER) experiment. A geometric model for the [2]catenanes was derived that approximates the macrocycles by circles and takes into account the topological constraint. Comparison of the experimental to the theoretically predicted pair correlation functions gives insight into the co‐conformational distribution and the size of the macrocycles. It was found that the macrocycles of the medium‐ and large‐sized catenanes in chloroform are close to fully expanded, while they are partially collapsed in glassy o‐terphenyl. For the small‐sized catenane, moderate interaction between the unsaturated sections of the macrocycles in chloroform is indicated by a slight overrepresentation of short label‐to‐label separations in the pair correlation function.     

Molecular Logic Circuits

Miniaturization has been an essential ingredient in the outstanding progress of information technology over the past fifty years. The next, perhaps ultimate, limit of miniaturization is that of molecules, which are the smallest entities with definite size, shape, and properties. Recently, great effort has been devoted to design and investigate molecular‐level systems that are capable of transferring, processing, and storing information in binary form. Some of these nanoscale devices can, in fact, perform logic operations of remarkable complexity. This research—although far from being transferred into technology—is attracting interest, as the nanometer realm seems to be out of reach for the “top‐down” techniques currently available to microelectronics industry. Moreover, such studies introduce new concepts in the “old” field of chemistry and stimulate the ingenuity of researchers engaged in the “bottom‐up” approach to nanotechnology.     

分子机器的研究进展

结合分子机器的基本概念、合成方法、驱动方式以及研究的意义, 综述了近几年分子机器的研究进展, 探讨了下一步研究的发展方向.     

Contractile and Extensible Molecular Figures‐of‐Eight

Two large rings, 66‐ (m‐66 ) and 78‐membered ( m‐78 ) rings, each one incorporating two pairs of transition‐metal‐complexing units, have been prepared. The coordinating fragments are alternating bi‐ and tridentate chelating groups, namely, 2,9‐diphenyl‐1,10‐phenanthroline (dpp) and 2,2′,2′,6′′‐terpyridine (terpy) respectively. Both macrocycles form molecular figures‐of‐eight in the presence of Fe^II, affording a classical bis‐terpy complex as the central core. The larger m‐78 ring can accommodate a four‐coordinate Cu^I center with the formation of a {Cu(dpp)₂}⁺ central complex and a highly twisted figure‐of‐eight backbone, whereas m‐66 is too small to coordinate Cu^I. Macrocycle m‐78 thus affords stable complexes with both Fe^II and Cu^I; the ligand around the metal changes from (terpy)₂ to (dpp)₂. This bimodal coordination situation allows for a large amplitude rearrangement of the organic backbone. When coordinated to preferentially octahedrally coordinated Fe^II or Cu^II, the height of the molecule along the coordinating axis of the tridentate terpy ligands is only about 11 Å, whereas the height of the molecule along the same vertical axis is several times as large for the tetrahedral Cu^I complex. Chemically or electrochemically driven contraction and extension motions along a defined axis make this figure‐of‐eight particularly promising as a new class of molecular machine prototype for use as a constitutive element in muscle‐like dynamic systems.     

Temperature-Driven Planar Chirality Switching of a Pillar[5]arene-Based Molecular Universal Joint

The study of an enantiopure bicyclic pillar[5]arene-based molecular universal joint (MUJ) by single-crystal X-ray diffraction allowed for the first time the unequivocal assignment of the absolute configuration of a planar chiral pillar[5]arene by circular dichroism spectroscopy. Crucially, the absolute configuration of the MUJ was switched reversibly by temperature, with an accompanying sign inversion of the anisotropy factor that varied by as much as 0.03, which is the largest value ever reported. Mechanistically, the reversible chirality switching of the MUJ is driven by the threading/dethreading motion of the fused ring and hence is dependent on both the size and nature of the ring and the solvent employed, reflecting the critical balance between the self-complexation of the ring by pillar[5]arene, the solvation to the excluded ring, and the inclusion of solvent molecules in the cavity.