Aza-Michael addition of 1,2-diazoles to structurally diverse enones: Efficient methods toward β-amino ketones

An efficient and mild protocol was realized using 1,2-diazoles and related heterocycles with cyclic and acyclic enones in presence of T3P (2,4,6-tripropyl-1,3,5,2,4,6-trioxatriphosphorinane-2,4,6-trioxide) toward the regioselective formation of N-cycloalkyl heterocycles at room temperature. The developed reaction conditions showcased good selectivity over a wide range of 1,2-diazoles and enones by delivering N-cycloalkyl heterocycles in excellent yields.     

Analysis of wines by ICP-MS: Is the pattern of the rare earth elements a reliable fingerprint for the provenance?

In a comparative analysis of young and finished product wines by semi-quantitative ICP-MS, a striking difference was observed: finished products exhibited significant concentrations of the rare earth elements whereas the concentrations in young wines which had not been subdued to any treatment after their initial preparation from the grapes were below the determination limits with a quadrupole instrument and could only be determined with a magnetic field instrument operated at a low mass resolution (R = 300). The reason was found in contamination from bentonites as usually applied for the purification of wines from tarnishing components such as proteins. Therefore, bentonites of different origin were extracted with a reference wine, and an increase of the rare earth element concentrations by more than one order of magnitude was observed in the extracts. The investigation leads to the conclusion that the concentration pattern of the rare earth elements can be strongly affected by the wine producing process and therefore is not generally suitable as a fingerprint for the provenance of wines. Received: 3 December 1998 / Revised: 11 February 1999 / Accepted: 18 February 1999     

Analysis of wines by ICP-MS: Is the pattern of the rare earth elements a reliable fingerprint for the provenance?

In a comparative analysis of young and finished product wines by semi-quantitative ICP-MS, a striking difference was observed: finished products exhibited significant concentrations of the rare earth elements whereas the concentrations in young wines which had not been subdued to any treatment after their initial preparation from the grapes were below the determination limits with a quadrupole instrument and could only be determined with a magnetic field instrument operated at a low mass resolution (R = 300). The reason was found in contamination from bentonites as usually applied for the purification of wines from tarnishing components such as proteins. Therefore, bentonites of different origin were extracted with a reference wine, and an increase of the rare earth element concentrations by more than one order of magnitude was observed in the extracts. The investigation leads to the conclusion that the concentration pattern of the rare earth elements can be strongly affected by the wine producing process and therefore is not generally suitable as a fingerprint for the provenance of wines.     

Is there a future for computational chemistry in drug research?

Improvements in computational chemistry methods have had a growing impact on drug research. But will incremental improvements be sufficient to ensure this continues? Almost all existing efforts to discover new drugs depend on the classic one target, one drug paradigm, although the situation is changing slowly. A new paradigm that focuses on a more systems biology approach and takes account of the reality that most drugs exhibit some level of polypharmacology is beginning to emerge. This will bring about dramatic changes that can significantly influence the role that computational methods play in future drug research. But these changes require that current methods be augmented with those from bioinformatics and engineering if the field is to have a significant impact on future drug research.     

Is hydrophilic interaction chromatography with silica columns a viable alternative to reversed-phase liquid chromatography for the analysis of ionisable compounds?

The separation of acidic, neutral and particularly basic solutes was investigated using a bare silica column, mostly under hydrophilic interaction chromatography (HILIC) conditions with water concentrations >2.5% and with >70% acetonitrile (ACN). Profound changes in selectivity could be obtained by judicious selection of the buffer and its pH. Acidic solutes had low retention or showed exclusion in ammonium formate buffers, but were strongly retained when using trifluoroacetic acid (TFA) buffers, possibly due to suppression of repulsion of the solute anions from ionised silanol groups at the low (s)(s)pH of TFA solutions of aqueous ACN. At high buffer pH, the ionisation of weak bases was suppressed, reducing ionic (and possibly hydrophilic retention) leading to further opportunities for manipulation of selectivity. Peak shapes of basic solutes were excellent in ammonium formate buffers, and overloading effects, which are a major problem for charged bases in RPLC, were relatively insignificant in analytical separations using this buffer. HILIC separations were ideal for fast analysis of ionised bases, due to the low viscosity of mobile phases with high ACN content, and the favourable Van Deemter curves which resulted from higher solute diffusivities.     

Is the assessment of interlaboratory comparison results for a small number of tests and limited number of participants reliable and rational?

Tests and/or test items can sometimes be expensive, unique, or only performed in a few laboratories. There can be cases where assigned values are unknown, there is no information, or only poor information on the probability density function attributed to the test result. Sometimes there are neither reference materials nor the ability to establish consensus values due to a lack of experts. It can be impossible to repeat a test on the same item because it is destroyed during the test itself, or the homogeneity of tested items is unknown and no criteria can be established. Specified technical requirements concerning proficiency testing and interlaboratory comparison schemes are generally not applicable in this situation. However, interlaboratory comparison could allow laboratories to have more confidence in their results. The present paper discusses three statistical methods of assessing interlaboratory comparison results obtained in such conditions. Two methods are based on an assigned value determined from participant results through robust analysis. The third is based on the compatibility of results assessed using the ζ parameter. This paper focuses on an interlaboratory comparison for two laboratories, each testing three samples. The use of statistical methods turns out to be high risk, particularly in terms of falsely accepting results. Additionally, is shown that methods dedicated to small samples are also not efficient in detecting discrepancies of test results.     

Is there computational support for an unprotonated carbon in the E4 state of nitrogenase?

In the key enzyme for nitrogen fixation in nature, nitrogenase, the active site has a metal cluster with seven irons and one molybdenum bound by bridging sulfurs. Surprisingly, there is also a carbon in the center of the cluster, with a role that is not known. A mechanism has been suggested experimentally, where two hydrides leave as a hydrogen molecule in the critical E₄ state. A structure with two hydrides, two protonated sulfurs and an unprotonated carbon has been suggested for this state. Rather recently, DFT calculations supported the experimental mechanism but found an active state where the central carbon is protonated all the way to CH₃. Even more recently, another DFT study was made that instead supported the experimentally suggested structure. To sort out the origin of these quite different computational results, additional calculations have here been performed using different DFT functionals. The conclusion from these calculations is very clear and shows no computational support for an unprotonated carbon in E₄. © 2017 Wiley Periodicals, Inc.     

On the active site of mononuclear B1 metallo β-lactamases: a computational study

Metallo-β-lactamases (MβLs) are Zn(II)-based bacterial enzymes that hydrolyze β-lactam antibiotics, hampering their beneficial effects. In the most relevant subclass (B1), X-ray crystallography studies on the enzyme from Bacillus Cereus point to either two zinc ions in two metal sites (the so-called ‘3H’ and ‘DCH’ sites) or a single Zn(II) ion in the 3H site, where the ion is coordinated by Asp120, Cys221 and His263 residues. However, spectroscopic studies on the B1 enzyme from B. Cereus in the mono-zinc form suggested the presence of the Zn(II) ion also in the DCH site, where it is bound to an aspartate, a cysteine, a histidine and a water molecule. A structural model of this enzyme in its DCH mononuclear form, so far lacking, is therefore required for inhibitor design and mechanistic studies. By using force field based and mixed quantum–classical (QM/MM) molecular dynamics (MD) simulations of the protein in aqueous solution we constructed such structural model. The geometry and the H-bond network at the catalytic site of this model, in the free form and in complex with two common β-lactam drugs, is compared with experimental and theoretical findings of CphA and the recently solved crystal structure of new B2 MβL from Serratia fonticola (Sfh-I). These are MβLs from the B2 subclass, which features an experimentally well established mono-zinc form, in which the Zn(II) is located in the DCH site. From our simulations the εεδ and δεδ protomers emerge as possible DCH mono-zinc reactive species, giving a novel contribution to the discussion on the MβL reactivity and to the drug design process.     

Is the dynamical polarization a significant part of the contribution of the triples to the correlation energy?

One may call dynamical polarization of doubly excited configurations the energy lowering of these configurations under the response of the other electrons to the so-created fluctuation of the electric field. This contribution of triply excited configurations may be identified and calculated through a computation that only requires a computation time proportional to the sixth power of the number of molecular orbitals (MOs), instead of the seventh power for the total contribution of the triples. Its amplitude depends on the choice of the MOs and becomes important when localized MOs are used.     

Is the Beckmann rearrangement a concerted or stepwise reaction? A computational study

[reaction: see text] RB3LYP calculations were performed on the Beckman rearrangement by the use of three substrates, acetone oxime (1), acetophenone oxime (2), and cyclohexanone oxime (3). Acidic solvents were modeled by H+ (CH3COOH)3 and H3O+ (H2O)6, and reaction paths were determined precisely. For 1, a two-step process involving a sigma-type cationic complex was obtained. For 2, a three-step process with pi- and sigma-type complexes was found in H+ (CH3COOH)3 and a two-step process involving a sigma-type cationic complex was obtained in H3O+ (H2O)6. However, for 3, a concerted process without pi and sigma complexes was calculated, which leads to the product, epsilon-caprolactam. Three different mechanisms were explained in terms of FMO theory.     

Is a radical bridge a route to strong exchange interactions in lanthanide complexes? A computational examination

The origin of very strong antiferromagnetic exchange in N(2)(3-) bridged complex, [{[(Me(3)Si)(2)N](2)Gd(THF)}(2)(μ-η(2):η(2)-N(2))](-) (1) has been probed using density functional theory (DFT) combined with molecular orbital (MO) and natural bond orbital (NBO) analysis. The analysis helps us to propose a generic mechanism of coupling for a {2p-4f} class of compounds.     

Quinoxalinone–benzimidazole rearrangement: an efficient strategy for the synthesis of structurally diverse quinoline derivatives with benzimidazole moieties

A novel and efficient procedure for the synthesis of structurally diverse benzimidazolylquinolines has been realized through a new acid-catalyzed quinoxalinone–benzimidazole rearrangement of the spiro-quinoxalinone derivatives formed in situ from the reaction of 3-(2-aminophenyl)quinoxalin-2(1Н)-ones and different ketones.     

Combination of computational methods,adsorption isotherms and selectivity tests for the conception of a mixed non-covalent–semi-covalent molecularly imprinted polymer of vanillin

A novel molecularly imprinted polymer (MIP) for vanillin was prepared by photo initiated polymerization in dichloromethane using a mixed semi-covalent and non-covalent imprinting strategy. Taking polymerisable syringaldehyde as “dummy” template, acrylamide was chosen as functional monomer on B3LYP/6-31+G(d,p) density functional theory computational method basis with counterpoise. The binding parameters for the recognition of vanillin on imprinted polymers were studied with three different isotherm models (Langmuir, bi-Langmuir and Langmuir–Freundlich) and compared. The results indicate an heterogeneity of binding sites. It was found and proved by DFT calculations that the specific binding of vanillin in the cavities is due to non-covalent interactions of the template with the hydroxyphenyl- and the amide-moieties. The binding geometry of vanillin in the MIP cavity was also modelled. The obtained MIP is highly specific for vanillin (with an imprinting factor of 7.4) and was successfully applied to the extraction of vanillin from vanilla pods, red wine spike with vanillin, natural and artificial vanilla sugar with a recovery of 80%.     

Parallel kinetic resolution of racemic mixtures: a new strategy for the preparation of enantiopure compounds?

Kinetic resolution of racemic mixtures is a well-established methodology for the preparation of optically active compounds. However, excellent enantioselectivities are required to obtain them in enantiopure form, due to the decrease in ee when conversion values are close to 50%. To overcome this limitation, a parallel (asymmetric) reaction can remove the disfavored enantiomer. In this review, several examples of this strategy showing its wide range of applicability are described, as well as their mathematical treatment and some new applications in combinatorial chemistry.     

Bifunctional compounds for controlling metal-mediated aggregation of the aβ42 peptide

Abnormal interactions of Cu and Zn ions with the amyloid β (Aβ) peptide are proposed to play an important role in the pathogenesis of Alzheimer's disease (AD). Disruption of these metal-peptide interactions using chemical agents holds considerable promise as a therapeutic strategy to combat this incurable disease. Reported herein are two bifunctional compounds (BFCs) L1 and L2 that contain both amyloid-binding and metal-chelating molecular motifs. Both L1 and L2 exhibit high stability constants for Cu(2+) and Zn(2+) and thus are good chelators for these metal ions. In addition, L1 and L2 show strong affinity toward Aβ species. Both compounds are efficient inhibitors of the metal-mediated aggregation of the Aβ(42) peptide and promote disaggregation of amyloid fibrils, as observed by ThT fluorescence, native gel electrophoresis/Western blotting, and transmission electron microscopy (TEM). Interestingly, the formation of soluble Aβ(42) oligomers in the presence of metal ions and BFCs leads to an increased cellular toxicity. These results suggest that for the Aβ(42) peptide-in contrast to the Aβ(40) peptide-the previously employed strategy of inhibiting Aβ aggregation and promoting amyloid fibril dissagregation may not be optimal for the development of potential AD therapeutics, due to formation of neurotoxic soluble Aβ(42) oligomers.