Structural and Spectral Analyses of 2-[(2-Benzothiazolylmethyl)thio]-benzenamine and 2-[(2-Benzothiazolylmethyl)thio]-benzenamine hydrobromide

Abstract  

2-[2-benzothiazoylmethyl)thio]-benzenamine, which was first reported in 1898, was isolated from the reaction of bromoacetyl bromide and 2-aminothiophenol [1]. The product crystallized from an aqueous methanol solution of the reaction mixture to which nickel(II) acetate had been added. 2-[(2-benzothiazolylmethyl)thio]-benzenamine crystallized in the monoclinic system, in space group C2/c, with cell dimensions of a = 27.392 (19) ?, b = 4.730 (3) ?, and c = 23.686 (16) ?, β = 122.465 (6)°, V = 2589(3) ?³, Z = 8 and refined to R = 0.0343 and R _w  = 0.0844. Crystallization from methanol yielded the product as the hydrobromide salt in the monoclinic space group Cc, with cell dimensions of a = 10.488 (3) ?, b = 33.404 (9) ?, c = 5.2578 (14) ?, β = 116.769(2)°, V = 1644.7(8) ?³, Z = 4 and refined to R = 0.0296 and R _w  = 0.0600. Mass spectral and NMR analyses confirmed that the bulk and crystalline compound were all 2-[(2-benzothiazolylmethyl)thio]-benzenamine.     

Crystallographic and Conformational Analysis of [(Z)-2-ethoxy-6-[(2-hydroxyphenylamino)methylene]cyclohexa-2,4-dienone]

Abstract  The single crystal X-ray diffraction analysis of the title compound, C₁₅H₁₅NO₃, shows that the structure is adopted to its NH tautomeric form and crystallizes in the orthorhombic space group P bcn with a = 21.2424(15) ?, b = 12.7696(9) ?, c = 9.3605(10) ?, Z = 8, V = 2539.1(4) ?³, D _c  = 1.346 g/cm³. The molecular conformation in the crystal is stabilized by an intramolecular H-bond and the crystal structure is stabilized by the bifurcated O–H···O type intermolecular H-bonds. In order to understand the effects on conformational flexibility of the title molecule, molecular energy profile was calculated as a function of the selected torsion angle by means of AM1 semi-empirical method. Index Abstract  Molecular and crystal structure of [(Z)-2-ethoxy-6-[(2-hydroxyphenylamino)methylene]cyclohexa-2,4-dienone], C₁₅H₁₅NO₃, have been determined by single crystal X-ray diffraction study, and conformational analysis of the title molecule with respect to the selected torsion angle has been achieved by AM1 semi-empirical calculations.      

Crystal structures of nitrato-4-bromo-2-[(2-hydroxyethylimino)methyl]phenolatoimidazolecopper and nitrato-4-chloro-2-[(2-Hydroxyethylimino)methyl]phenolatoimidazolecopper

Nitrato-4-bromo-2-[(2-hydroxyethylimino)methyl]phenolatoimidazolecopper and nitrato-4-chloro-2-[(2-hydroxyethylimino)methyl]phenolatoimidazolecopper were synthesized and studied by X-ray diffraction. The crystals are isostructural. The coordination polyhedron of the copper atom can be described as a distorted square pyramid whose basal plane is formed by the phenolic and alcoholic oxygen atoms and the nitrogen atom of the monodeprotonated tridentate azomethine molecule and the imidazole nitrogen atom. The apex of the copper polyhedron is occupied by the oxygen atom of the nitrato group. The complexes are linked together by hydrogen bonds with the participation of the nitrato groups to form a three-dimensional framework.     

Crystal structures of bis-ligand complexes of copper(II) with 2-[(2-hydroxyethylamino)-methyl]-4,6-dinitrophenol, 2,4-dichloro-6-[(2-hydroxyethylamino)-methyl]phenol, and 2,4-dibromo-6-[(2-hydroxyethylamino)-methyl]phenol

The crystal structures of bis{2,4-dibromo-6-[(2-hydroxyethylamino)-methyl]phenolato}copper (I), bis{2,4-dichloro-6-[(2-hydroxyethylamino)-methyl]phenolato}copper (II), and bis{2-[(2-hydroxyethylamino)-methyl]-4,6-dinitrophenolato}copper (III) in which the metal atom is located at the center of symmetry are determined using X-ray diffraction. Crystals of compounds I and II are isostructural. The copper atom in the structures of compounds I and I coordinates two singly deprotonated bidentate molecules of the ligand through the phenol oxygen atoms and the azomethine nitrogen atoms with the formation of a distorted planar square. In the crystals, complexes I and II form one-dimensional infinite chains along the b axis. In the structure of compound III, the coordination polyhedron of the central atom is an elongated tetragonal bipyramid with the base formed by the azomethine nitrogen atoms and the phenol oxygen atoms. Both vertices of the bipyramid are occupied by the oxygen atoms of the amino alcohol groups of the neighboring complexes, which are related to the initial complex through the center of symmetry. In turn, the oxygen atoms of the alcohol groups of the initial complex are located at the vertices of the coordination bipyramids of the metal atoms of the neighboring centrosymmetric complexes, thus forming infinite polymer chains along the a axis.     

Solvent-induced Polymorphism of 2-[(2-Amino-phenylimino)-phenyl-methyl]-phenol

The title compound C₁₉H₁₆N₂O crystallize as either triclinic or monoclinic polymorph depending on the solvent used. Polymorph [1] crystallizes from methanol in the space group P \( \mathop 1\limits^ - \) with unit cell dimensions: a = 8.723(2), b = 9.344(2), c = 10.544(2) Å, α = 71.54(2), ß = 78.74(2), γ = 74.15(2)°, and Z = 2. Polymorph [2] crystallizes from benzene with space group P2₁/n with unit cell dimensions: a = 10.230(3), b = 20.536(7), c = 14.563(4) Å, ß = 97.14(3)°, and Z = 8. The only similarity between molecules of [1] and two independent molecules of [2] can be found in almost co-planar phenyl moiety with chelate ring. Both structures are characterized with strong intramolecular O-H···N hydrogen bond. Whereas the molecular interconnections in [2] are based on van der Waals attractions between discrete molecules, molecules of [1] associate in dimers via intermolecular N-H···O hydrogen bonding by the operation of crystallographic centre of inversion.     

Crystal structure and spectroscopic study of 2-[(2,6-dichlorophenyl)amino]phenylacetoxyacetic acid (Aceclofenac)

The crystal structure of the title compound has been determined. The crystals are monoclinic:P2₁ n(NO. 14),a=12.279(7),b=8.223(1),c=15.504(7)Å,=96.16(2)°,V _c =1556(2)ų,Z=4,D _x =1.511 g cm^–3,=(MoK)=0.71069 Å. The structure was solved by direct methods and refined with 1970 reflections to a finalR value of 0.057. Analytical, mass, spectral, and physicochemical data are also reported.     

Structure of (1,2-diaminoethane) (1-[[2-[(2-aminoethyl)imino]propyl]thio]-2-propanone)nickel(II) nitrate

A single crystal X-ray investigation of the purple nickel (II) complex Ni[L(en)](NO₃)2, produced by condensation of 1,2-diaminoethane (en) with the thiodiketone S(CH₂COCH₃)2 in the presence of nickel (II) nitrate (L is NH₂(CH₂)₂N=C(CH₃)CH₂SCH₂COCH₃), shows that the metal ions are six coordinate. The new ligand L is tetradentate, with the N,N and S donor atoms arranged meridionally, and the coordination shell completed by the carbonyl oxygen atom of L and the nitrogen atoms of 1,2-diaminoethane. Metal-ligand bond distances are Ni-N: 2.08 av. (en), 2.10 and 2.05 (NH₂ and N=C respectively of L); Ni-O, 2.16; Ni-S, 2.45 Å. There is considerable angular distortion from regular octahedral values of the bond angles at nickel. The crystals are monoclinic,P2₁/c (No. 14),a=12.433(2),b=11.709(1),c=13.150(2) Å,=103.93(1)°,V _c=1858.2(4) ų. The structure was solved by the heavy-atom method and refined by full-matrix least squares to anR value of 0.055 for 3633 reflections.     

Crystal structures of bis{4-bromo-2-[(2-hydroxyethylimino)methyl]phenolato}copper and bis{4-chloro-2-[(2-hydroxyethylimino)methyl]phenolato}copper

The crystal structures of bis{4-bromo-2-[(2-hydroxyethylimino)methyl]phenolato}copper (I) and bis{4-chloro-2-[(2-hydroxyethylimino)methyl]phenolato}copper (II) are determined. Crystals I are monoclinic, space group P2₁/c, Z = 2, and R = 0.0732 (for all reflections). Crystals II are likewise monoclinic, space group P2₁/n, Z = 2, and R = 0.1106. In the structures of compounds I and II, the metal atom is situated at the center of symmetry and coordinated by two singly deprotonated bidentate 4-bromo-or 4-chloro-2-[(2-hydroxyethylimino)methylphenol molecules, respectively, through phenol oxygen and azomethine nitrogen atoms, which form a distorted planar square. In the structures of compound II, the coordination polyhedron of the central atom is completed to an elongated tetragonal bipyramid by the amino alcohol oxygen atoms of the adjacent complexes.     

Crystal structure of 1,3-di-2-[(4-methoxyphenyl)-1-diazenyl]imidazolidine

The crystal and molecular structure of 1,3-di-2-[(4-methoxyphenyl)-1-diazenyl]imidazolidine (1) has been determined by single crystal X-ray diffraction analysis. This novel bis-triazene assumes a close-to planar structure with the aryltriazene moieties aligned in diametrically opposed directions, unlike many other previously reported bis-triazenes, which assume a folded structure. The structure of 1 is compared with the closely related, non-cyclic bis-triazene analogue (2), and also compared with the structure of the simple mono-triazene (3). Crystal data: 1 C₁₇H₂₀N₆O₂, monoclinic, space group C2/c, a = 34.948(3), b = 5.925(5), c = 8.1225(6) Å, = 100.8420(10)°, and V = 1652.0(2) ų, for Z = 4.     

Structural study of [(CH3)2NH2]2CoCl4 single crystals at room temperature

The structure of the crystals grown from a solution of dimethylammonium and cobalt chlorides is determined. It is found that the crystals have the composition [(CH₃)₂NH₂]₂CoCl₄. At room temperature, the crystals are monoclinic (space group P2₁/c, Z = 4) and the unit cell parameters are as follows: a = 8.545(2) Å, b = 11.447(2) Å, c = 13.313(3) Å, and β = 90.10°. Cations and anions form simple and bifurcated hydrogen bonds N-H?Cl.     

4-(E)-2-[3-(3-[(E)-2-(4-cyanophenyl)-1-diazenyl]perhydrobenzo[d]imidazol-1-ylmethyl)perhydrobenzo[d]imidazol-1-yl]-1-diazenylbenzonitrile: X-ray crystal structure

4-(E)-2-[3-(3-[(E)-2-(4-Cyanophenyl)-1-diazenyl]perhydrobenzo[d]imidazol-1-ylmethyl) perhydrobenzo[d]imidazol-1-yl]-1-diazenylbenzonitrile (1) has been synthesized by reac- tion of p-cyanobenzene diazonium chloride with a mixture of formaldehyde and trans-1,2-cyclohexanediamine. The crystal structure has been determined by single crystal X-ray diffraction analysis. The bis-triazene (1) does not adopt a folded conformation, unlike previously studied ethylenediamine analogues, and there is no indication of -stacking in the crystal packing. The dominant interaction between molecules is the van der Waal's attraction between cyclohexane rings. This result establishes the structure of the product of this diazonium coupling reaction as the 1-(1-imidazolidinylmethyl)imidazolidine derivative and not the alternate tetraazabicyclo[4.4.1]undecane derivative. Crystal data: 1 C₂₉H₃₄N₁₀, orthorhombic, space group Pbca, a = 17.946(1), b = 13.106(1), c = 24.108(1) Å, V = 5670.6(3) ų, for Z = 8.     

Synthesis and Structural Characterization of Bis[(cyclohexylamino)pent-2-en-4-onato]-Chromium(II)

Abstract  Addition of one equivalent of CrI₂ to two equivalents of lithium cyclohexylamino-pent-2-en-4-onate results in bis[(cyclohexylamino)pent-2-en-4-onato]-chromium(II). Crystallization in diethylether reaction solvent forms the hemi-etherate A with the asymmetric unit showing two target compounds and one molecule of cocrystallized diethylether in the P-1 space group with crystal cell parameters a = 12.931(4) Å, b = 13.207(4) Å, c = 16.104(5) Å, α = 66.559(5)°, β = 77.670(5)°, γ = 81.562(5)°, V = 2,459.1(14) Å³ and Z = 4. Drying A in vacuo and recrystallization in pentane yields a nonsolvated crystalline phase B with an asymmetric unit displaying only one molecule of the target compound in the P2₁/c space group with crystal cell parameters a = 14.290(7) Å, b = 14.082(7) Å, c = 11.246(6) Å, β = 94.807(8)°, V = 2,255.1(19) Å³ and Z = 4. Graphical Abstract  A Cr(II) complex supported by two β-enaminoketiminato ligands, bis[(cyclohexylamino)pent-2-en-4-onato]-chromium(II), has been synthesized and has been structurally characterized in two different crystal phases.      

Synthesis and Crystal Structure of 3-[(Naphthalen-2-yl)methyl]Isocoumarin

Abstract 3-[(Naphthalen-2-yl) methyl]isocoumarin was synthesized by the reaction of homophthalic acid with 2-(naphthalen-2-yl)acetyl chloride at elevated temperature and its crystal structure has been determined (C₂₀H₁₄O₂), Mr = 286.31, a = 13.704(3), b = 7.356(4), c = 7.042(7) ?, β = 99.21(3)°, space group Pc, Z = 2, and V = 700.7(8) ?³. The isocoumarin and the naphthalene ring systems are individually planar and the dihedral angle between the mean planes of these two ring systems is 70.05(8)°. Graphical Abstract Synthesis and crystal structure of 3-[(Naphthalen-2-yl)methyl]isocoumarin Aamer Saeed, Junmei Liang, Masood Parvez The synthesis and crystal structure of a novel isocoumarin, 3-[(naphthalen-2-yl)methyl]isocoumarin has been presented.      

2-[(trifluoroacetyl)amino]benzoquinone and the hydrochloride and perchlorate salts of 2-aminohydroquinone

Hydrogen bonding parameters for the title materials are reported. 2-[(trifluoroacetyl)amino]benzoquinone crystallizes in the monoclinic space group P2 ₁/c, with a = 18.195(4), b = 5.110(1), c = 9.635(2), = 104.22(3)°, V = 868.4(3) ų, and Z = 4. This compound exhibits two weak intramolecular hydrogen bonds. The first is between a hydrogen atom of the quinone ring and the carbonyl oxygen of the trifluoroacetamide group; it has a distance of 2.24 Å and a C—HsO angle of 122°. The second is between the hydrogen atom of the trifluoroacetamide group and a quinone carbonyl group; it has a distance of 2.26 Å and a N—HsO angle of 107°. 2-Aminohydroquinone hydrochloride crystallizes in the orthorhombic space group Pca2₁, with a = 16.220(3), b = 5.211(1), c = 8.719(2), V = 737.0(2) ų, and Z = 4. 2-Aminohydroquinone perchlorate crystallizes in the orthorhombic space group P2₁2₁2₁, with a = 7.110(1), b = 7.139(1), c = 18.043(4), V = 915.8(3) ų, and Z = 4. All active hydrogens of the two salts exhibit intermolecular hydrogen bonds that serve to organize a three-dimensional framework for each case.     

Structure of 2-[(Phenyl)-(3,5-Dimethyl-Pyrazol-1-yl)-Methyl]-Malonic Acid Diethyl Ester

Abstract  

The titled new functionalized ligand of type 2-[(phenyl)-(3,5-dimethyl-pyrazol-1-yl)-methyl]-malonic acid diethyl ester (4) is prepared in good yield through condensation of 3,5-dimethyl-pyrazole, with 2-arylidene-malonic acid diethyl esters 3. The structure of 4 was determined by spectral (IR, ¹H and ¹³C NMR), elemental analyses and X-ray diffraction data. The title compound (4) crystallizes in the monoclinic space group P2₁/a, with a = 7.9253 (2), b = 17.1299 (5), c = 13.4522 (4) ?, β = 90.220 (2)°, V = 1,826.25 (9) ?³, Z = 4 and with R _int = 0.021. The molecular conformation shows two possible pockets ready to coordinate two metal atoms. The crystal structure of (4) is stabilized by inter-molecular C–H⋯O and C–H⋯N hydrogen bonding.     

Spectra and structure of organophosphorus compounds,XVIII: Infrared and Raman spectra of [(CH3)2PS]2, [(CD3)2PS]2, and [(CH3CH2)2PS]2 in the solid state

The infrared (80–3500 cm^–1) and Raman (10–3500 cm^–1) spectra of solid [(CH₃)₂PS]₂, [(CD₃)₂PS]₂, and [(CH₃CH₂)₂PS]₂ have been recorded. A complete vibrational assignment is proposed for tetramethyldiphosphine disulfide on the basis ofC _2h molecular symmetry. The observed intermolecular vibrations indicate little factor group effects, and no frequency differences were observed for the normal modes of the two different molecules which exist in the crystal as reported from the x-ray study. Most of the observed bands in the spectrum of tetraethyldiphosphine disulfide have been assigned. At least two of the three optical librational modes were observed in the Raman effect.     

Investigation of the Molecular Structure of (E)-2-Bromo-6-[(4-bromo-2-methylphenylimino)methyl]-4-chlorophenol

Crystallography Reports - In this study, the molecular structure of (E)-2-bromo-6-[(4-bromo-2-methylphenylimino)methyl]-4-chlorophenol has been investigated using crystallographic (XRD),...     

Crystal structure of methyl trans-3-[(2-(methoxycarbonyl)phenyl)sulfinyl]acrylate: a product resulting from trapping of a sulfenic acid by methyl propiolate

Evidence for the formation of unstable sulfenic acids (RSOH) as reaction intermediates is commonly provided by trapping these compounds with methyl propiolate. The crystal structure of a vinyl sulfoxide derived from the trapping of a sulfenic acid with methyl propiolate is reported here. The title compound C₁₂H₁₂O₅S crystallized in the triclinic space group,P1¯ with unit cell parameters: a = 6.1600(4), b = 9.7286(7), c = 11.3698(8) Å, = 112.024(1), = 94.662(1), = 95.429(1)°, and Z = 2.     

Structure determination of [tetraethylammonium]-[(1,3-dithiole-2-one-4,5-dithiolato)diphenyl-(thiocyanato-N)stannate]

The title compound (3) has been synthesised and its molecular structure has been elucidated by single crystal X-ray diffraction. Refinement of the complex in space groupP2₁/c witha=11.535(4),b=9.831(2),c=25.217(1) and β=94.23(5)° converged atR=0.064. The geometry at the tin center in the anion is trigonal bipyramidal, with the thiocyanato N atom and a dithiolato S atom in the axial sites. The tetraethylammonium cation exhibtis normal geometry.     

Molecular Structure and Supramolecular Architecture of (E)-2-Bromo-6-[(2,4,6-Tribromophenylimino)methyl]-4-Chlorophenol

Crystallography Reports - In this study, the molecular structure and supramolecular architecture of a new compound have been studied in depth using single crystal X-ray diffraction (XRD) technique....