Prediction of the effects of imperfect construction of a QMS filter

Modelling techniques have previously predicted the observed behaviour of perfectly manufactured QMS mass filters. These methods are extended to examination of the behaviour of imperfect QMS filters; this examination considers the behaviour of QMS filters with one rod displaced radially inward as this is a simple manufacturing defect that arises when a rod does not fit correctly into the mounting.The results demonstrate the well known, but poorly documented property, that exchanging the connections of a poorly performing QMS device sometimes improves performance. This is shown to arise because only a displacement of a y-rod produces a large effect. The results also show that displacement of a y-rod may produce a spurious additional peak known as a precursor. More detailed investigation suggests that precursors are not separate peaks but are formed because a section of the main peak is removed causing an apparent double peak.Finally results confirm that adjustment of the voltage applied to a displaced rod can be used to significantly improve the QMS behaviour. A small change by a fraction alpha in the position of a single rod may be compensated by a change of 2 x alpha in the voltage applied to that rod.     

A thermodynamic interpretation of optimum conditions of the separation of mixture components by distillation of dilute solutions

A condition for the maximum thermodynamic efficiency of distillation of dilute solutions in a multistep cascade was obtained from the condition of a maximum change in the entropy of a mixture. These conditions were shown to correspond to a maximum degree of separation of mixture components. A thermodynamic equation was derived to describe the relation between a decrease in the Gibbs energy and the mixture value increment during distillation of a dilute ideal solution.     

Study of cryostructurization of polymer systems

The influence of freezing of a reaction mass on the properties of the resulting covalently cross-linked gels is exemplified by a system composed of a solution of chitosan in aqueous acetic acid and glutaric dialdehyde serving as a cross-linking agent. The freezing is shown to lead to a noticeable decrease of critical concentration of gelation as compared with the reactions of polymeric chain cross-linking in ordinary conditions. Consideration is given to some properties of three-dimensional networks obtained by cryostructurization.     

钛表面固定特异性识别内皮祖细胞的多肽适配子

在钛表面固定可与循环血液中的内皮祖细胞(EPC)特异性结合的多肽适配子,构建内皮祖细胞的特异性识别表面,用于心血管材料的表面改性.首先,采用固相合成法合成可与EPC特异性结合的多肽适配子,其序列为TPSLEQRTVYAK,并在羧基端进行生物素修饰;然后,采用磷酸处理钛表面,在钛表面获得化学键合的羟基,该羟基化表面与3-...     

Fast evaporation of spreading droplets of colloidal suspensions

When a coffee droplet dries on a countertop, a dark ring of coffee solute is left behind, a phenomenon often referred to as the coffee-ring effect. A closely related yet less-well-explored phenomenon is the formation of a layer of particles, or skin, at the surface of the droplet during drying. In this work, we explore the behavior of a mathematical model that can qualitatively describe both phenomena. We consider a thin axisymmetric droplet of a colloidal suspension on a horizontal substrate undergoing spreading and evaporation. In contrast to prior work, precursor films (rather than pinned contact lines) are present at the droplet edge, and evaporation is assumed to be limited by how quickly molecules can transfer out of the liquid phase (rather than by how quickly they can diffuse through the gas phase). The lubrication approximation is applied to simplify the mass and momentum conservation equations, and the colloidal particles are allowed to influence the droplet rheology through their effect on the viscosity. By describing the transport of the colloidal particles with the full convection-diffusion equation, we are able to capture depthwise gradients in particle concentration and thus describe skin formation, a feature neglected in prior models of droplet evaporation. The highly coupled model equations are solved for a range of problem parameters using a finite-difference scheme based on a moving overset grid. The presence of evaporation and a large particle Peclet number leads to the accumulation of particles at the liquid-air interface. Whereas capillarity creates a flow that drives particles to the droplet edge to produce a coffee ring, Marangoni flows can compete with this and promote skin formation. Increases in viscosity due to particle concentration slow down droplet dynamics and can lead to a reduction in the spreading rate.     

Efficient quantification of the importance of contacts for the dynamical stability of proteins

Understanding the stability of the native state and the dynamics of a protein is of great importance for all areas of biomolecular design. The efficient estimation of the influence of individual contacts between amino acids in a protein structure is a first step in the reengineering of a particular protein for technological or pharmacological purposes. At the same time, the functional annotation of molecular evolution can be facilitated by such insight. Here, we use a recently suggested, information theoretical measure in biomolecular design - the Kullback-Leibler-divergence - to quantify and therefore rank residue-residue contacts within proteins according to their overall contribution to the molecular mechanics. We implement this protocol on the basis of a reduced molecular model, which allows us to use a well-known lemma of linear algebra to speed up the computation. The increase in computational performance is around 10(1)- to 10(4)-fold. We applied the method to two proteins to illustrate the protocol and its results. We found that our method can reliably identify key residues in the molecular mechanics and the protein fold in comparison to well-known properties in the serine protease inhibitor. We found significant correlations to experimental results, e.g., dissociation constants and Φ values.     

The influence of aggregation of porphyrins on the efficiency of photogeneration of hydrogen peroxide in aqueous solution

The pH-dependence of the ability of coproporphyrin (CP) and uroporphyrin (UP) to photogenerate hydrogen peroxide (H2O2) in aqueous solution was investigated, with special attention to the structure-activity relationship related to the aggregation of the porphyrins. It was found that the efficiency was strongly dependent on the aggregation of CP and UP mediated by changes in the pH of the solution, and a dimeric form had a weak ability to produce H2O2, while a highly aggregated form had a good ability. The increased efficiency of the highly aggregated porphyrin to produce H2O2 was further demonstrated using a different type of aggregate formed by the electrostatic interaction of cationic tetrakis-5,10,15,20-(N-methyl-4-pyridyl)porphin (TMPyP) with anionic tetrakis-5,10,15,20-(4-sulfonatophenyl)porphin (TSPP). The present results demonstrated the importance of the state of aggregation of porphyrin to photogenerate H2O2, and the results may help to develop a new type of medicine for photodynamic therapy.     

Nonlinear Unmixing of Hyperspectral Datasets for the Study of Painted Works of Art

Nonlinear unmixing of hyperspectral reflectance data is one of the key problems in quantitative imaging of painted works of art. The approach presented is to interrogate a hyperspectral image cube by first decomposing it into a set of reflectance curves representing pure basis pigments and second to estimate the scattering and absorption coefficients of each pigment in a given pixel to produce estimates of the component fractions. This two‐step algorithm uses a deep neural network to qualitatively identify the constituent pigments in any unknown spectrum and, based on the pigment(s) present and Kubelka–Munk theory to estimate the pigment concentration on a per‐pixel basis. Using hyperspectral data acquired on a set of mock‐up paintings and a well‐characterized illuminated folio from the 15th century, the performance of the proposed algorithm is demonstrated for pigment recognition and quantitative estimation of concentration.     

Origin of strong chiroptical activities in films of nonafluorenes with a varying extent of pendant chirality

Novel nonafluorenes with a varying extent of pendant chirality were synthesized for an investigation of the origins of chiroptical activities in neat films. Thermal annealing of 4-microm-thick sandwiched films and of 90-nm-thick spin-cast films, all on surface-treated substrates, produced monodomain glassy films characterized as a right-handed cholesteric stack with a helical pitch length ranging from 180 to 534 nm and from 252 to 1151 nm, respectively. The observed strong circular dichroism (CD) and g(e) as functions of helical pitch length in single-substrate monodomain glassy cholesteric films were quantitatively interpreted with a circularly polarized fluorescence theory accounting for light absorption, emission, and propagation in a cholesteric stack. Although intertwined molecular helices were likely to be present, cholesteric stacking of rodlike molecules seemed to be the predominant contributor to the strong chiroptical activities. All the cholesteric stacks comprising a polydomain glassy film on an untreated substrate were found to contribute to CD and g(e) largely to the same extent as in a monodomain film. A circularly polarized blue organic light-emitting diode containing a nonafluorene film resulted in a g(e) of 0.35 with a luminance yield of 0.94 cd/A at 20 mA/cm(2), the best performance to date.     

Dependence of the Rate of Electrodeposition of Metals at Mono- and Multielectrodes on Voltage in the Case of an Exaltation Mechanism of Mass Transport

Dependences of the rate of copper deposition on mono- and multielectrodes out of dilute solutions of acetic acid at voltages of 20–250 V are compared. It is established that the same rate of deposition in the case of a multielectrode (25 electrodes with a diameter of 0.1 mm) takes place at a voltage that is lower by 2.7 times than that in the case of a monoelectrode with a diameter of 0.5 mm and the same area. The same results are obtained during electrodeposition of cadmium and thallium. In order to explain this effect, a two-layered model of potential distribution is suggested. In accordance with this model, the resistance of electrolyte in the vicinity of a multielectrode is equal to the sum of the resistance of the layer nearest to the electrode (where it is determined by the sum of conductances to each microelectrode) and the external layer, where the potential distribution is close to hemispherical. It is shown that calculations in accordance with this model allow one to give an estimate of the effect's scale that agrees with experiment and to predict its possible limits following an increase in the number of electrodes that make up a multielectrode.     

Observation of spectral anisotropy of gold nanoparticles

Metallic nanoparticles synthesized by solution-phase chemistry usually exhibit various polygonal morphologies. The shape is known to have a great impact on a nanoparticle's optical properties, for instance, the surface plasmon resonance frequency. It remains unclear, however, whether the scattering spectrum of nanoparticles is generally anisotropic in the far field as a result. This simple question turns out to be extremely challenging to address because of the particle-to-particle shape inhomogeneity in a bulk sample, and the high sensitivity of surface plasmon resonance to local environments. We report the observation of scattering angle-dependent spectra using a newly developed single-particle tracking spectroscopy (SPS). Furthermore, we show that SPS has provided a way to directly visualize the rotational random walk of individual gold nanoparticles in water for the first time.     

Influence of the morphology of samples in the pyrolysis of PVC

PVC was used as a model substance to study the dependence of thermal measurement data on the preparation and morphological characteristics of samples The PVC treated was a commercially available suspension polymer, Ongrovil S 155, produced by the Borsodi Vegyi Kombinát. The whole thermal process was followed by TG and DTG measurements in air and argon atmospheres by means of a Du Pont 990 Thermoanalyzer. Evolved-gas analysis was performed with a home-made apparatus. Pyrolysis gas chromatography was accomplished using a Hamilton type pyrolyzer and a Carlo Erba Chromatograph furnished with a flame ionization detector. The investigations showed benzene and other components to be evolved from the initial polymer and an alteration depending on the morphological characteristics of the samples. This was suggested to be due to the different mechanisms of thermal degradation of the PVC.     

Effect of the sequence of the introduction of foreign substances on the action of papain

Summary In general, aniline, aniline hydrochloride, aniline sulfate, and triethylamine act as inhibitors in the hydrolysis of casein or of a suspension of flour from grain of Cicer arietinum by means of papain. The order in which the enzyme and the substrate is added to the inhibitor often has a significant effect. As a rule, there is a greater retardation when the enzyme is added last to a complex of the substrate and the inhibitor.     

Investigation of MM-PBSA rescoring of docking poses

Target-based virtual screening is increasingly used to generate leads for targets for which high quality three-dimensional (3D) structures are available. To allow large molecular databases to be screened rapidly, a tiered scoring scheme is often employed whereby a simple scoring function is used as a fast filter of the entire database and a more rigorous and time-consuming scoring function is used to rescore the top hits to produce the final list of ranked compounds. Molecular mechanics Poisson-Boltzmann surface area (MM-PBSA) approaches are currently thought to be quite effective at incorporating implicit solvation into the estimation of ligand binding free energies. In this paper, the ability of a high-throughput MM-PBSA rescoring function to discriminate between correct and incorrect docking poses is investigated in detail. Various initial scoring functions are used to generate docked poses for a subset of the CCDC/Astex test set and to dock one set of actives/inactives from the DUD data set. The effectiveness of each of these initial scoring functions is discussed. Overall, the ability of the MM-PBSA rescoring function to (i) regenerate the set of X-ray complexes when docking the bound conformation of the ligand, (ii) regenerate the X-ray complexes when docking conformationally expanded databases for each ligand which include "conformation decoys" of the ligand, and (iii) enrich known actives in a virtual screen for the mineralocorticoid receptor in the presence of "ligand decoys" is assessed. While a pharmacophore-based molecular docking approach, PhDock, is used to carry out the docking, the results are expected to be general to use with any docking method.     

The mechanism of reequilibration of solids in the presence of a fluid phase

The preservation of morphology (pseudomorphism) and crystal structure during the transformation of one solid phase to another is regularly used as a criterion for a solid-state mechanism, even when there is a fluid phase present. However, a coupled dissolution-reprecipitation mechanism also preserves the morphology and transfers crystallographic information from parent to product by epitaxial nucleation. The generation of porosity in the product phase is a necessary condition for such a mechanism as it allows fluid to maintain contact with a reaction interface which moves through the parent phase from the original surface. We propose that interface-coupled dissolution-reprecipitation is a general mechanism for reequilibration of solids in the presence of a fluid phase.     

Analysis of nucleation ability of cluster configurations with Monte Carlo simulations of argon

We determine the nucleation ability of argon clusters from Monte Carlo simulations. The nucleation rate appears to be defined by a sole characteristic of the clusters, namely, the stability. The stability is calculated as the ratio of grand canonical growth and decay rates and can be assigned to individual cluster configurations. We study the connection between the stability of the cluster configurations and their volume and total potential energy. Neither the potential energy nor the volume of a cluster configuration has a clear relation to its stability, and thus to the nucleation ability. On the other hand, we show that it is possible to use a specific volume for each cluster size to calculate the work of the cluster formation. These clusters with a unique volume have the same average stability as the full set of clusters. Our simulation method allows us to study the effect of possible deviations from equilibrium in the cluster configuration distributions. We argue that the nucleation process itself can produce a source for such a deviation. We show that even a small deviation from equilibrium in the cluster configuration distribution can lead to a dramatic deceleration of the nucleation rate. Although our simulations may overestimate the magnitude of the effect, they give qualitative estimates for its importance.     

Method of computer-aided determination of the type of normal vibrations of polyatomic molecules

Correct assignment of calculated and experimental frequencies, as well as corservation of the initial assignment in case of a random coincidence of two frequencies during the solution of an inverse spectral problem, are important problems in spectroscopy of polyatomic molecules. Vibrations are classified according to their form, which is thought to be a more reliable basis for assignment than frequency. We offer a PC program to determine the type of vibrations according to their form (obtained by solving a direct vibrational problem) in a given system of vibrational basis set functions. Optimization of systems of basis set functions for molecules with six-membered rings is discussed. L. Ya. Karpov Physicochemical Scientific Research Institute. Translated fromZhurnal Strukturnoi Khimii, Vol. 36, No. 2, pp. 298–303, March–April, 1995. Translated by L. Smolina     

四氟乙烯齐聚体的反应 四氟乙烯四、五聚体和芳香胺的反应

前已报道四氟乙烯四聚体(全氟-3,4-甲基己烯-3)(1)、五聚体(全氟-3,4-二甲基-4-乙基己烯-2)(2)和脂肪烷氧以及脂肪胺的亲核反应.本文报道化合物1,2和芳香胺如苯胺、β-萘胺的反应.由于烯烃1、2双键处于分子中间,因而当亲核试剂进攻时,双键容易发生重排,生成的末端基烯烃更具反应性,故导致一取代、二取代、三取代以及环化降解等复杂产物.     

Influence of supercoiling on the disruption of dsDNA

We propose that supercoiling energizes double-stranded DNA (dsDNA) so as to facilitate thermal fluctuations to an unzipped state. We support this with a model of two elastic rods coupled via forces that represent base-pair interactions. Supercoiling is shown to lead to a distention of base pairs over a short span of dsDNA. This enhances the thermal probability for their disruption. The localized region of distention is analogous to a soliton. Our theory permits the development of an analogy between the unzipping transition and a second-order phase transition, for which the possibility of a new set of critical exponents is identified.