Development of an NMR interface microchip "MICCS" for direct detection of reaction products and intermediates of micro-syntheses using a "MICCS-NMR".

The development of an NMR interface microchip and its applications to the real-time monitoring of chemical reactions are described. The microchip device was named "MICCS" (MIcro Channeled Cell for Synthesis monitoring), and the method using it was named "MICCS-NMR". MICCS was inserted into a 5 mm Phi NMR sample tube. Thus standard solution NMR probes without any modifications can be used in MICCS-NMR measurements. A gap between MICCS and the sample tube was filled with a deuterated solvent for an NMR lock. The reaction temperature and reaction time in MICCS can be easily changed by adjusting the temperature of the NMR probe and changing the flow rates, respectively. The effectiveness of the MICCS-NMR was verified in the real-time monitoring of the Wittig reaction. Preliminary data on the direct detection of intermediates of the Grignard reaction is also reported. Besides real-time monitoring of chemical reactions, MICCS-NMR would be useful as a qualitative detection method for microchip-based synthesis.     

Basic concepts of "cation pool" and "cation flow" methods and their applications in conventional and combinatorial organic synthesis

Carbocations have been generally considered to be relatively unstable and transient species. But the "cation pool" method enables the easy accumulation of carbocations in conventional reaction media such as dichloromethane. In the "cation pool" method, carbocations are generated by low-temperature electrochemical oxidation and accumulated in a solution. In the next step, the carbocations thus produced are allowed to react with various nucleophiles. Combinatorial parallel synthesis based upon the "cation pool" method has also been developed. The applicability of the "cation pool" method depends upon the stability of the cation that is accumulated. This problem can be overcome by the "cation flow" method. In the "cation flow" method, carbocations are generated in a microflow electrochemical system. Short residence times and efficient temperature control of the microflow system are advantageous. Combinatorial sequential synthesis has been achieved based on the "cation flow" method.     

A "traceless" Staudinger ligation for the chemoselective synthesis of amide bonds

[reaction: see text] Here we report a novel modification of our previously reported "Staudinger ligation" that generates an amide bond from an azide and a specifically functionalized phosphine. This method for the selective formation of an amide bond, which does not require the orthogonal protection of distal functional groups, should find general utility in synthetic and biological chemistry.     

Conformationally imprinted receptors: atropisomers with "write", "save", and "erase" recognition properties

[reaction: see text] An atropisomeric receptor with "write", "save", and "erase" recognition properties is presented. The receptor adopts a complementary conformation when heating in the presence of an ethyl adenine-9-acetate guest molecule. This complementary hydrogen bonding conformation is "saved" upon cooling to room temperature due to the reestablishment of restricted rotation and is stable even upon removal of the guest. Finally, the atropisomeric receptor can be "erased" by heating in the absence of the guest.     

“讲一练二考三”理念在有机化学实验教学中的运用——以苯甲酸的制备为例

采用微波辐射及相转移催化剂改进了高锰酸钾氧化制备苯甲酸实验,系统研究了微波功率、反应温度、反应时间、反应物物质的量比、催化剂用量等因素对产率的影响,并同电热套加热方式进行了比较.结果表明,该反应的最佳条件为:微波辐射时间40 min,微波功率80 W,反应温度80℃,相转移催化剂氯化苄基三乙铵用量为甲苯的0.2当量,高锰酸钾与甲苯的物质的量比为4.5:1.与电热套加热方式相比,微波辐射法缩短了反应时间,并显著提高了反应效率.以苯甲酸制备实验为例介绍了“讲一练二考三”教学新理念及其在有机化学实验教学实践中的运用.     

Solid-phase synthesis of asymmetrically substituted "AB3-type" phthalocyanines

Synthesis of phthalocyanines with asymmetrical substitution on the periphery is often difficult due the problems in purification of the phthalocyanine mixtures obtained. Using a poly(ethylene glycol) (PEG)-based support with a Wang-type linker, we have developed the synthesis of monohydroxylated, oligoethylene glycol substituted phthalocyanines utilizing an amidine-base-promoted phthalonitrile tetramerization reaction. The use of a hydrophilic support allows symmetrical phthalocyanine product formed in solution to be readily and completely removed by washing while leaving the "AB3" product on the support. Acid cleavage with 10% trifluoroacetic acid provides the pure unsymmetrically substituted Pc. This method was applied to several metallo Pcs. Additionally, methods to avoid premature reactions on-resin that give A2B2 products are provided.     

A novel "double-coupling" strategy for iterative oligothiophene synthesis using orthogonal Si/Ge protection

[reaction: see text] A new iterative synthesis of regioregular oligothiophenes has been developed in which "double-coupling" after each iteration minimizes deletion sequences. The method exploits the susceptibility of alpha-silyl- but not alpha-germyl-substituted thiophene derivatives toward nucleophilic ipso-protodemetalation and features an unusual "base-free" Suzuki-type cross-coupling protocol. The strategy has been designed for the solid-phase synthesis of high purity oligothiophenes using a germanium-based linker.     

Functionalization of single-walled carbon nanotubes "on water"

Single-walled carbon nanotubes (SWNTs) are exfoliated and functionalized into small bundles and individuals by vigorous stirring "on water" in the presence of a substituted aniline and an oxidizing agent. This is an example of an "on water" reaction that leads to functionalized SWNTs, and it represents a "green", or environmentally friendly, process. A variety of reaction conditions were explored. The products were analyzed with Raman, UV-vis-NIR, and X-ray photoelectron spectroscopies, atomic force and transmission electron microscopies, and thermogravimetric analysis.     

"Virtual injector" flow tube method for measuring relative rates kinetics of gas-phase and aerosol species

A new method for measuring gas-phase and aerosol reaction kinetics is described in which the gas flow, itself, acts as a "virtual injector" continuously increasing the contact time in analogy to conventional movable-injector kinetics techniques. In this method a laser is directed down the length of a flow tube, instantly initiating reaction by photodissociation of a precursor species at every point throughout the flow tube. Key tropospheric reactants such as OH, Cl, NO(3), and O(3) can be generated with nearly uniform concentrations along the length of the flow tube in this manner using 355 nm radiation from the third harmonic of a Nd:YAG laser. As the flow travels down the flow tube, both the gas-phase and particle-phase species react with the photogenerated radicals or O(3) for increasingly longer time before exiting and being detected. The advantages of this method are that (1) any wall loss of gas-phase and particle species is automatically accounted for, (2) the reactions are conducted under nearly pseudo-first-order conditions, (3) the progress of the reaction is followed as a continuous function of reaction time instead of reactant concentration, (4) data collection is quick with an entire decay trace being collected in as little as 1 min, (5) relative rates of several species can be measured simultaneously, and (6) bimolecular rate constants at least as small as k = 10(-17) (cm(3)/molecule)/s, or aerosol uptake coefficients at least as small as γ = 10(-4), can be measured. Using the virtual injector technique with an aerosol chemical ionization mass spectrometer (CIMS) as a detector, examples of gas-phase relative rates and uptake by oleic acid particles are given for OH, Cl, NO(3), and O(3) reactions with most agreeing to within 20% of published values, where available.     

The preparation of a fully differentiated "multiwarhead" siderophore precursor

A protected, fully differentiated siderophore analogue has been prepared so that "Trojan Horse"-like siderophore drug conjugates with different drugs can be synthesized. The key steps in the synthesis include controlled preparation of an unsymmetrical urea and its conversion to a fully differentiated isocyanurate by reaction with chloro(carbonyl) isocyanate.     

A facile "dispersion-decomposition" route to metal sulfide nanocrystals

In this paper, we demonstrate a simple and general "dispersion-decomposition" approach to the synthesis of metal sulfide nanocrystals with the assistance of alkylthiol. This is a direct heating process without precursor injection. By using inorganic metal salts and alkylthiol as the raw materials, high-quality Ag(2)S, Cu(2)S, PbS, Ni(3)S(4), CdS, and ZnS nanocrystals were successfully synthesized. The mechanism study shows that the reaction undergoes two steps. A key intermediate compound, metal thiolate, is generated first. It melts and disperses into the solvent at a relatively low temperature, and then it decomposes into metal sulfide as a single precursor upon heating. This method avoids using toxic phosphine agent and injection during the reaction process. The size and shape of the nanocrystal can be also controlled by the concentration of the reactant and ligands. Furthermore, the optical properties and assembly of the nanocrystals have also been studied. This report provides a facile, direct-heating "dispersion-decomposition" approach to synthesize metal sulfides nanocrystals that has potential for future large-scale synthesis.     

New "green" approaches to the synthesis of pyrazole derivatives

A novel approach to the synthesis of pyrazole derivatives from tosylhydrazones of alpha,beta-unsaturated carbonyl compounds possessing a beta-hydrogen is proposed, exploiting microwave (MW) activation coupled with solvent free reaction conditions. The cycloaddition was studied on three ketones (trans-4-phenyl-3-buten-2-one, beta-ionone and trans-chalcone). The corresponding 3,5-disubstituted-1H-pyrazoles were obtained in high yields and after short reaction times. In order to simplify and point out the green chemistry features of the method, a further improvement was achieved under the same catalytic conditions with a "one pot" synthesis of these heterocyclic compounds, starting directly from their carbonyl precursors via tosylhydrazones generated in situ. For an exhaustive study, the dielectric properties of the solid reaction mixtures were also measured, in order to obtain input data for the numerical simulation of their heating behaviour in the single mode MW cavity which was used for experimental work. In order to supply a valid methodology and tool for measuring the environmental impact, a comparative study between the synthetic route proposed and the classical synthetic route has been carried out.     

On the nature of organic catalysis "on water"

A molecular origin of the striking rate increase observed in a reaction on water is studied theoretically. A key aspect of the on-water rate phenomenon is the chemistry between water and reactants that occurs at an oil-water phase boundary. In particular, the structure of water at the oil-water interface of an oil emulsion, in which approximately one in every four interfacial water molecules has a free ("dangling") OH group that protrudes into the organic phase, plays a key role in catalyzing reactions via the formation of hydrogen bonds. Catalysis is expected when these OH's form stronger hydrogen bonds with the transition state than with the reactants. In experiments more than a 5 orders of magnitude enhancement in rate constant was found in a chosen reaction. The structural arrangement at the "oil-water" interface is in contrast to the structure of water molecules around a small hydrophobic solute in homogeneous solution, where the water molecules are tangentially oriented. The latter implies that a breaking of an existing hydrogen-bond network in homogeneous solution is needed in order to permit a catalytic effect of hydrogen bonds, but not for the on-water reaction. Thereby, the reaction in homogeneous aqueous solution is intrinsically slower than the surface reaction, as observed experimentally. The proposed mechanism of rate acceleration is discussed in light of other on-water reactions that showed smaller accelerations in rates. To interpret the results in different media, a method is given for comparing the rate constants of different rate processes, homogeneous, neat and on-water, all of which have different units, by introducing models that reduce them to the same units. The observed deuterium kinetic isotope effect is discussed briefly, and some experiments are suggested that can test the present interpretation and increase our understanding of the on-water catalysis.     

Synthesis of "solid solution" and "core-shell" type cobalt--platinum magnetic nanoparticles via transmetalation reactions

In this article, we report the synthesis of "solid solution" and "core-shell" types of well-defined Co--Pt nanoalloys smaller than 10 nm. The formation of these alloys is driven by redox transmetalation reactions between the reagents without the need for any additional reductants. Also the reaction proceeds selectively as long as the redox potential between the two metals is favorable. The reaction between Co(2)(CO)(8) and Pt(hfac)(2) (hfac = hexafluoroacetylacetonate) results in the formation of "solid solution" type alloys such as CoPt(3) nanoparticles. On the other hand, the reaction of Co nanoparticles with Pt(hfac)(2) in solution results in "Co(core)Pt(shell)" type nanoalloys. Nanoparticles synthesized by both reactions are moderately monodispersed (sigma < 10%) without any further size selection processes. The composition of the alloys can also be tuned by adjusting the ratio of reactants. The magnetic and structural properties of the obtained nanoparticles and reaction byproducts are characterized by TEM, SQUID, UV/vis, IR, EDAX, and XRD.     

"Chiral perturbation factor" approach reveals importance of entropy term in stereocontrol of the 2,4-pentanediol-tethered reaction

The stereocontrol mechanism of the 2,4-pentanediol (PD)-tethered reaction was studied in detail using a reaction system consisting of phenyl and rhodium carbenoid moieties. Different tethers were examined to analyze the effects of the methyl groups on the PD tether. Among the reactions with these tethers, the PD tether achieves an unmeasurably high stereoselectivity in a diastereomeric ratio of >500. Another tether showing a high but measurable stereoselectivity in a ratio of 41 is mostly controlled by the entropy term. To clarify the role of the methyl groups on the chiral tethers, which are the origin of the stereocontrol, the "chiral perturbation factor" is introduced. This parameter is defined as the rate of a chiral reaction relative to that of an achiral reference reaction. By analyzing the temperature dependence of the chiral perturbation factors for different chiral-tethered reactions, high potentials of the PD-tethered reaction in its stereocontrol are concluded to be due to the entropy term.     

The Development of "Caged" Substrates for the Studies of Rapid Electron Transfer and Early Events in Protein Folding

In recent years,the applications of photolabile compounds, or compounds that unmask a function group upon absorption of light, have become more diverse. Since such compounds can provide an effective means of orthogonal protection, they have been used to facilitate the synthesis of complex, polyfunctional organic molecules. These materials have also been used to "cage" compounds by protection of an essential functional group, so that a chemical reaction may be initiated by a pulse of light. In this manner, mixing difficulties can be circumvented in kinetics measurements. Applications of this method include the photolysis of caged ATP for studies of muscle fiber contraction, where diffusion of ATP into the muscle fiber is, slow; of caged fluorescent probes that only emit light after photolysis; and even of caged enzymes by incorporating photolabile groups on essential side chains.     

Synthesis of "sugar-rods" with phytohemagglutinin cross-linking properties by using the palladium-catalyzed Sonogashira reaction

A palladium-catalyzed Sonogashira reaction has been applied for the syntheses of divalent "sugar-rods" which exhibited excellent lectin cross-linking properties. The procedure, which involves a tetrakis(triphenylphosphine)palladium-catalyzed cross-coupling reaction between an alkyne and a halogen-bearing sp2-carbon in DMF at 60 degrees C, is very efficient and the dimeric or heterobifunctional "sugar-rods" (8-13, 15-17) were isolated in 65-100% yields. Dimers 8a and 15a were both shown to form insoluble cross-linked lattices when mixed with the tetrameric plant lectin from Canavalia ensiformis (Concavalin A, Con A). Moreover, the relative inhibitory properties of the synthetic dimannosides were determined by means of the hemagglutination of rabbit erythrocytes, whereby dimer 15a was shown to be 20-fold more potent than monomeric methyl alpha-D-mannopyranoside.     

Comparison of new microemulsion prepared "Pt-in-Ceria" catalyst with conventional "Pt-on-Ceria" catalyst for water-gas shift reaction

New "Pt-in-CeO(2)" catalyst prepared by microemulsion method is shown to give higher activity for a water-gas shift reaction but with no formation of CH(4), the side product from hydrogenation of carbon oxides using a hydrogen-rich reformate as compared to conventional "Pt-on-CeO(2)" catalysts. Detailed characterization by DRIFT analysis and temperature programmed reduction presented in this work clearly suggest the ceria coverage on Pt inhibits the metal from forming a strong CO adsorption.     

Biomolecular free energy profiles by a shooting/umbrella sampling protocol, "BOLAS"

We develop an efficient technique for computing free energies corresponding to conformational transitions in complex systems by combining a Monte Carlo ensemble of trajectories generated by the shooting algorithm with umbrella sampling. Motivated by the transition path sampling method, our scheme "BOLAS" (named after a cowboy's lasso) preserves microscopic reversibility and leads to the correct equilibrium distribution. This makes possible computation of free energy profiles along complex reaction coordinates for biomolecular systems with a lower systematic error compared to traditional, force-biased umbrella sampling protocols. We demonstrate the validity of BOLAS for a bistable potential, and illustrate the method's scope with an application to the sugar repuckering transition in a solvated deoxyadenosine molecule.     

"Achiral" benzophenone ligand for highly enantioselective Ru catalysts in ketone hydrogenation

[reaction: see text] The chirality of an "achiral" benzophenone-based complex can be controlled. The benzophenone-based complex thus controlled affords high enantioselectivity in the catalytic asymmetric ketone hydrogenation (up to 99% ee, >99% yield).